FC929850
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 1.311e-23 Identity = 53/153 (34.64%), Postives = 91/153 (59.48%), Query Frame = 2 Query: 275 LMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTL 727 L DLEP + S+++ P+ I+ P+NF + +GAGNNW G Y+ G ++ + + D++ +EA+ D L+GF + H + ++ + +P +++ T+SVFP+ + D VV+PYN+ LS+ +L ++AD +VLDN AL I L Sbjct: 1 LADLEPRVLHSIQASPYKNIYNPENFYIHKDGTGAGNNWGMG-YSMGEQVHEDIWDMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRL 152
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.236e-23 Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 2 Query: 359 GQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMM-LTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757 G+ A NN+A+GHYT G ELI+ D +RK A+ C+ LQGF V H + ++ EY + L F V+PSP+VS +VVEPYN+ LS H L+E D +LDNEA+Y+IC ++L P + +LN Sbjct: 3 GKEDAANNYARGHYTVGKELIEVCADRIRKLADQCEGLQGFLVFHSVGGGTGSGFGSLLLQRLALEYGGKKSKLDFCVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSFMLDNEAIYNICKKSLDIEKPTYTNLN 137
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBD_XENTR (Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.216e-22 Identity = 67/218 (30.73%), Postives = 111/218 (50.92%), Query Frame = 2 Query: 92 ILHIQGGQCGNQIGAKFWEVIC-DEHGID-HTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS--GPFGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS 730 ++ +Q GQCGNQ+G +F++++C D H H+ K D Q +++E G V RAVL+D+EP + S G G+ + F Q G GNNWA G+ G + D V+D+VRK+ E CD L GF +R+ YPD ++L ++P + +V+ YN+ L++ L +D +V +N+ ++ +C Q ++ Sbjct: 3 VVTVQLGQCGNQVGYEFFDILCSDLHSKPGHSTKRENDY-YQTVCKEQFFHEEECGDLVTRAVLVDMEPKVVSKTLSMAGRSGKWKYDISSQFSQKQGCGNNWANGYCVHGPKHQDIVMDLVRKQVEKCDRLGGFFTIMSMAGGTGSGMGTFLTRCLRDAYPDSLLLNQVIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDIIHKVCSQLMN 218
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.602e-21 Identity = 47/109 (43.12%), Postives = 70/109 (64.22%), Query Frame = 2 Query: 143 WEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENC 463 WE+ EHGI G D+ + + + N +++E G++VPRAV +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E++D LD VRK A+NC Sbjct: 2 WELYWLEHGIQPDGMMPSDTTVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGEEIVDLCLDRVRKLADNC 110
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 3.341e-19 Identity = 58/227 (25.55%), Postives = 112/227 (49.34%), Query Frame = 2 Query: 92 ILHIQGGQCGNQIGAKFWE-VICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSV--RSGPFGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLSSPPY-FCDLN 757 I+ +Q GQCGNQIG + ++ ++ D H + Q +++E G + RAVL+D+EP ++ + ++ GQ + F Q G+GNNWA G+ G +S+++++RKE E CD GF + + ++Y + + + ++P + +V+ YN+ L++ L +D ++ +N+A++ IC + ++ F D+N Sbjct: 3 IVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQMLSKAAQSGQWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDIN 228
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.363e-19 Identity = 58/227 (25.55%), Postives = 112/227 (49.34%), Query Frame = 2 Query: 92 ILHIQGGQCGNQIGAKFWEVI-CDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSV--RSGPFGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLSSPPY-FCDLN 757 ++ +Q GQCGNQIG + ++ + D H + Q +++E G + RAVL+D+EP ++ ++ GQ + F Q G+GNNWA G+ G +S++++++KE E CD L GF + ++++Y + + + ++P + +V+ YN+ L++ L +D +V +N+A++ IC + ++ F D+N Sbjct: 3 VVTVQLGQCGNQIGFEVFDALYSDSHCPQGLCSERENEAYQASSKERFFSEEENGVSIARAVLVDMEPKVINQTLSKAAQSGQWKYAQHSCFCQKEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAKLMNIKQISFSDIN 228
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.699e-19 Identity = 59/231 (25.54%), Postives = 112/231 (48.48%), Query Frame = 2 Query: 92 ILHIQGGQCGNQIGAKFWE-VICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-------SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLSSPPY-FCDLN 757 I+ +Q GQCGNQIG + ++ ++ D H + Q +++E G + RAVL+D+EP ++ S + + + +GQ G+GNNWA G+ G +S++D++RKE E CD GF + ++++Y + + + ++P + +V+ YN+ L++ L +D +V +N+A++ IC + ++ F D+N Sbjct: 3 IVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCCKRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQTLS----KAAQSGRWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFSDIN 228
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.300e-18 Identity = 59/231 (25.54%), Postives = 111/231 (48.05%), Query Frame = 2 Query: 92 ILHIQGGQCGNQIGAKFWEVIC-DEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-------SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLSSPPY-FCDLN 757 I+ +Q GQCGNQIG + ++ + D H + Q ++ E G V RAVL+D+EP ++ S + + + +GQ G+GNNWA G+ G + +S++++++ E E CD L GF + K++++Y + + ++P + +V+ YN+ L++ L +D ++ +N+A++ IC + ++ F DLN Sbjct: 3 IVTVQLGQCGNQIGFEVFDALFRDSHCSQGLCSKRDNEAYQASCRERFFREEENGVPVARAVLVDMEPKVINQTLS----KAAQSGRWNYGQHTSFCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLN 228
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.970e-13 Identity = 36/103 (34.95%), Postives = 58/103 (56.31%), Query Frame = 2 Query: 452 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757 A+ C LQGF + H + ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E +D ++DNEA+YDIC + L P + +LN Sbjct: 1 ADACSGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICCRNLDIERPTYTNLN 103
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.041e-12 Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 2 Query: 452 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757 A+ C LQGF V H + ++ EY + L FSV+P +VS VVEPYN+ L+ H +E +D ++DNEA+YDIC + L P + +LN Sbjct: 1 ADQCSGLQGFLVFHSFGGGTGSGFTSLLMERLSVEYSKKSKLEFSVYPDRQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICNRNLDIERPTYTNLN 103 The following BLAST results are available for this feature:
BLAST of FC929850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 422
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC929850 ID=FC929850; Name=FC929850; organism=Citrus clementina; type=EST; length=760bpback to top |