FC929850

Overview
NameFC929850
Unique NameFC929850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.311e-23
Identity = 53/153 (34.64%), Postives = 91/153 (59.48%), Query Frame = 2
Query:  275 LMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTL 727
            L DLEP  + S+++ P+  I+ P+NF   +  +GAGNNW  G Y+ G ++ + + D++ +EA+  D L+GF + H              + ++ + +P +++ T+SVFP+ +  D VV+PYN+ LS+ +L ++AD  +VLDN AL  I    L
Sbjct:    1 LADLEPRVLHSIQASPYKNIYNPENFYIHKDGTGAGNNWGMG-YSMGEQVHEDIWDMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRL 152          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.236e-23
Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 2
Query:  359 GQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMM-LTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            G+  A NN+A+GHYT G ELI+   D +RK A+ C+ LQGF V H              + ++  EY  +   L F V+PSP+VS +VVEPYN+ LS H L+E  D   +LDNEA+Y+IC ++L    P + +LN
Sbjct:    3 GKEDAANNYARGHYTVGKELIEVCADRIRKLADQCEGLQGFLVFHSVGGGTGSGFGSLLLQRLALEYGGKKSKLDFCVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSFMLDNEAIYNICKKSLDIEKPTYTNLN 137          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBD_XENTR (Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.216e-22
Identity = 67/218 (30.73%), Postives = 111/218 (50.92%), Query Frame = 2
Query:   92 ILHIQGGQCGNQIGAKFWEVIC-DEHGID-HTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRS--GPFGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS 730
            ++ +Q GQCGNQ+G +F++++C D H    H+ K   D   Q      +++E   G  V RAVL+D+EP  +    S  G  G+     +  F Q  G GNNWA G+   G +  D V+D+VRK+ E CD L GF                     +R+ YPD ++L   ++P     + +V+ YN+ L++  L   +D  +V +N+ ++ +C Q ++
Sbjct:    3 VVTVQLGQCGNQVGYEFFDILCSDLHSKPGHSTKRENDY-YQTVCKEQFFHEEECGDLVTRAVLVDMEPKVVSKTLSMAGRSGKWKYDISSQFSQKQGCGNNWANGYCVHGPKHQDIVMDLVRKQVEKCDRLGGFFTIMSMAGGTGSGMGTFLTRCLRDAYPDSLLLNQVIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDIIHKVCSQLMN 218          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.602e-21
Identity = 47/109 (43.12%), Postives = 70/109 (64.22%), Query Frame = 2
Query:  143 WEVICDEHGIDHTGKYSGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENC 463
            WE+   EHGI   G    D+ + +  +  N +++E   G++VPRAV +DLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E++D  LD VRK A+NC
Sbjct:    2 WELYWLEHGIQPDGMMPSDTTVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGEEIVDLCLDRVRKLADNC 110          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.341e-19
Identity = 58/227 (25.55%), Postives = 112/227 (49.34%), Query Frame = 2
Query:   92 ILHIQGGQCGNQIGAKFWE-VICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSV--RSGPFGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLSSPPY-FCDLN 757
            I+ +Q GQCGNQIG + ++ ++ D H          +   Q      +++E   G  + RAVL+D+EP  ++ +  ++   GQ     +  F Q  G+GNNWA G+   G    +S+++++RKE E CD   GF +                   + ++Y + + +   ++P     + +V+ YN+ L++  L   +D  ++ +N+A++ IC + ++     F D+N
Sbjct:    3 IVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQMLSKAAQSGQWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDIN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.363e-19
Identity = 58/227 (25.55%), Postives = 112/227 (49.34%), Query Frame = 2
Query:   92 ILHIQGGQCGNQIGAKFWEVI-CDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSV--RSGPFGQIFRPDNFVFGQS-GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLSSPPY-FCDLN 757
            ++ +Q GQCGNQIG + ++ +  D H          +   Q      +++E   G  + RAVL+D+EP  ++    ++   GQ     +  F Q  G+GNNWA G+   G    +S++++++KE E CD L GF +                   ++++Y + + +   ++P     + +V+ YN+ L++  L   +D  +V +N+A++ IC + ++     F D+N
Sbjct:    3 VVTVQLGQCGNQIGFEVFDALYSDSHCPQGLCSERENEAYQASSKERFFSEEENGVSIARAVLVDMEPKVINQTLSKAAQSGQWKYAQHSCFCQKEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAKLMNIKQISFSDIN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.699e-19
Identity = 59/231 (25.54%), Postives = 112/231 (48.48%), Query Frame = 2
Query:   92 ILHIQGGQCGNQIGAKFWE-VICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-------SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLSSPPY-FCDLN 757
            I+ +Q GQCGNQIG + ++ ++ D H          +   Q      +++E   G  + RAVL+D+EP  ++   S    +  +   + +GQ        G+GNNWA G+   G    +S++D++RKE E CD   GF +                   ++++Y + + +   ++P     + +V+ YN+ L++  L   +D  +V +N+A++ IC + ++     F D+N
Sbjct:    3 IVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCCKRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQTLS----KAAQSGRWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFSDIN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.300e-18
Identity = 59/231 (25.54%), Postives = 111/231 (48.05%), Query Frame = 2
Query:   92 ILHIQGGQCGNQIGAKFWEVIC-DEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-------SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLSSPPY-FCDLN 757
            I+ +Q GQCGNQIG + ++ +  D H          +   Q      ++ E   G  V RAVL+D+EP  ++   S    +  +   + +GQ        G+GNNWA G+   G +  +S++++++ E E CD L GF +                  K++++Y   + +   ++P     + +V+ YN+ L++  L   +D  ++ +N+A++ IC + ++     F DLN
Sbjct:    3 IVTVQLGQCGNQIGFEVFDALFRDSHCSQGLCSKRDNEAYQASCRERFFREEENGVPVARAVLVDMEPKVINQTLS----KAAQSGRWNYGQHTSFCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLN 228          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.970e-13
Identity = 36/103 (34.95%), Postives = 58/103 (56.31%), Query Frame = 2
Query:  452 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            A+ C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 ADACSGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICCRNLDIERPTYTNLN 103          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.041e-12
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 2
Query:  452 AENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            A+ C  LQGF V H              + ++  EY  +  L FSV+P  +VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    1 ADQCSGLQGFLVFHSFGGGTGSGFTSLLMERLSVEYSKKSKLEFSVYPDRQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICNRNLDIERPTYTNLN 103          
The following BLAST results are available for this feature:
BLAST of FC929850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBG_COCHE1.311e-2334.64Tubulin gamma chain (Fragment) OS=Cochliobolus het... [more]
TBA_DICPU2.236e-2342.96Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBD_XENTR4.216e-2230.73Tubulin delta chain OS=Xenopus tropicalis GN=tubd1... [more]
TBA_PICAB1.602e-2143.12Tubulin alpha chain (Fragment) OS=Picea abies GN=T... [more]
TBD_HUMAN3.341e-1925.55Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 ... [more]
TBD_CANFA4.363e-1925.55Tubulin delta chain OS=Canis familiaris GN=TUBD1 P... [more]
TBD_MACFA5.699e-1925.54Tubulin delta chain OS=Macaca fascicularis GN=TUBD... [more]
TBD_MOUSE6.300e-1825.54Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 ... [more]
TBA4_CHICK7.970e-1334.95Tubulin alpha-4 chain (Fragment) OS=Gallus gallus ... [more]
TBA3_CHICK1.041e-1237.86Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]

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Properties
Property NameValue
Genbank descriptionC34001B02EF PostHarvC1 Citrus clementina cDNA clone C34001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929850 ID=FC929850; Name=FC929850; organism=Citrus clementina; type=EST; length=760bp
GGCGACTCGCCAACCCCTACGTCATCCCAAACTTTCTCGCAAATTTTTCT
CTCCCTTTCCCGCGAAACAAACAGAACAAAAAATGAGAGAAATCTTGCAC
ATCCAGGGTGGGCAATGCGGCAACCAGATCGGAGCCAAGTTCTGGGAGGT
CATCTGCGACGAGCACGGAATTGACCACACGGGGAAGTACAGCGGAGACT
CCGATCTCCAACTCGAACGCATCAATGTTTATTACAACGAGGCCAGCGGC
GGAAGGTACGTCCCACGCGCCGTGTTGATGGATCTGGAGCCTGGGACCAT
GGACTCTGTTAGATCCGGTCCGTTCGGGCAGATATTTCGCCCCGATAACT
TCGTGTTCGGGCAGTCTGGCGCTGGCAATAACTGGGCCAAGGGTCATTAC
ACCGAAGGCGCTGAGTTGATCGACTCTGTTCTGGATGTTGTTAGAAAGGA
AGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTATGTCATTCTTTGG
GAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTATTTCCAAGATCAGG
GAGGAGTATCCAGATCGCATGATGTTGACATTTTCCGTCTTCCCGTCTCC
TAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCTACCCTCTCAGTAC
ATCAGCTTGTTGAAGATGCCGATGAATGTATGGTGCTAGATAATGAAGCT
CTATATGATATTTGCTTTCAGACTCTCAGCTCGCCACCCTACTTTTGTGA
TCTTAACCAT
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