FC929850

Overview
NameFC929850
Unique NameFC929850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11184 contig Ccv1_Contig11184:3..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBGN_GUITH (Tubulin gamma chain, nucleomorph OS=Guillardia theta GN=tubG PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.776e-12
Identity = 52/212 (24.53%), Postives = 94/212 (44.34%), Query Frame = 2
Query:   89 EILHIQGGQCGNQIGAKFWEVICDEHGI---DHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV-EPYNATLSVHQLVEDADECMVLDNEALYDI 712
            EIL +Q G+ G   G +FW+ +  E  +      GK S  +D      NV++ E++   ++PR ++ DL     + +    + +++  +         GN+W KG+Y EG    + V +++RK  E  + ++ F V +              I  IR  YP   +   S+FP    +  V  +PYN+ LS+       D  +   N A+ ++
Sbjct:    4 EILTLQVGKTGILTGNEFWKSLVREKNLLSDFSLGKNSPTND------NVFFEESNESFFIPRTIIFDLSERDFNYIMKSNYSKMYDKNRHFILNKNTGNSWLKGYY-EGISNCNLVDNILRKRIEKMNSVKYFNVFNSINGGTGAGLSSYLIEYIRNNYPKSFINCCSIFPDLYGNTQVTFQPYNSVLSIAWQGLYCDSNIFFQNHAIENL 208          
BLAST of FC929850 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.776e-12
Identity = 35/102 (34.31%), Postives = 57/102 (55.88%), Query Frame = 2
Query:  455 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEDADECMVLDNEALYDICFQTLS-SPPYFCDLN 757
            + C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC + L    P + +LN
Sbjct:    2 DQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEQSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 103          
The following BLAST results are available for this feature:
BLAST of FC929850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBGN_GUITH1.776e-1224.53Tubulin gamma chain, nucleomorph OS=Guillardia the... [more]
TBA8_CHICK1.776e-1234.31Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]

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Properties
Property NameValue
Genbank descriptionC34001B02EF PostHarvC1 Citrus clementina cDNA clone C34001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929850 ID=FC929850; Name=FC929850; organism=Citrus clementina; type=EST; length=760bp
GGCGACTCGCCAACCCCTACGTCATCCCAAACTTTCTCGCAAATTTTTCT
CTCCCTTTCCCGCGAAACAAACAGAACAAAAAATGAGAGAAATCTTGCAC
ATCCAGGGTGGGCAATGCGGCAACCAGATCGGAGCCAAGTTCTGGGAGGT
CATCTGCGACGAGCACGGAATTGACCACACGGGGAAGTACAGCGGAGACT
CCGATCTCCAACTCGAACGCATCAATGTTTATTACAACGAGGCCAGCGGC
GGAAGGTACGTCCCACGCGCCGTGTTGATGGATCTGGAGCCTGGGACCAT
GGACTCTGTTAGATCCGGTCCGTTCGGGCAGATATTTCGCCCCGATAACT
TCGTGTTCGGGCAGTCTGGCGCTGGCAATAACTGGGCCAAGGGTCATTAC
ACCGAAGGCGCTGAGTTGATCGACTCTGTTCTGGATGTTGTTAGAAAGGA
AGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTATGTCATTCTTTGG
GAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTATTTCCAAGATCAGG
GAGGAGTATCCAGATCGCATGATGTTGACATTTTCCGTCTTCCCGTCTCC
TAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCTACCCTCTCAGTAC
ATCAGCTTGTTGAAGATGCCGATGAATGTATGGTGCTAGATAATGAAGCT
CTATATGATATTTGCTTTCAGACTCTCAGCTCGCCACCCTACTTTTGTGA
TCTTAACCAT
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