FC929852

Overview
NameFC929852
Unique NameFC929852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15055 contig Ccv1_Contig15055:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: TRXB_METJA (Putative thioredoxin reductase OS=Methanocaldococcus jannaschii GN=MJ1536 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 57/170 (33.53%), Postives = 83/170 (48.82%), Query Frame = 1
Query:  181 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEESHFLTKYGSKFI 690
            IIG+GP            +L  +  E   A     GG++     VEN+PGF + I G +L ++ +N + +F   I  + V K++ K RPFKV T +   L  T+++ATG   KKL     D F  RGIS C +CD  A  + +K + VIG    A+  +  L     K I
Sbjct:    7 IIGAGPGGLTAGIYAMRGKLNALCIEKENA-----GGRIAEAGIVENYPGFEE-IRGYELAEKFKNHAEKFKLPIIYDEVIKIETKERPFKVITKNSEYLTKTIVIATGTKPKKLGL-NEDKFIGRGISYCTMCD--AFFYLNKEVIVIGRDTPAIMSAINLKDIAKKVI 167          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: AHPF_STAES (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ahpF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 53/163 (32.52%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAME 651
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L +      +   T I    + K D   R   V  ++ +VL + TVI++TGA  +KL  PG D   N+G++ C  CDG  P+F +K +AVIGGG+S +E
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAEHIAQYDIDTMTGIRATNIEKTDSAIR---VTLENDAVLESKTVIISTGASWRKLNIPGEDRLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVE 359          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: AHPF_STAEQ (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ahpF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 53/163 (32.52%), Postives = 80/163 (49.08%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAME 651
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L +      +   T I    + K D   R   V  ++ +VL + TVI++TGA  +KL  PG D   N+G++ C  CDG  P+F +K +AVIGGG+S +E
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAEHIAQYDIDTMTGIRATNIEKTDSAIR---VTLENDAVLESKTVIISTGASWRKLNIPGEDRLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVE 359          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: AHPF_STAAW (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus aureus (strain MW2) GN=ahpF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 53/163 (32.52%), Postives = 79/163 (48.47%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAME 651
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L        +   T I    + K D      KV  ++ +VL + TVI+ATGA  +KL  PG +   N+G++ C  CDG  P+F +K +AVIGGG+S +E
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTD---EAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVE 359          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: AHPF_STAAS (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus aureus (strain MSSA476) GN=ahpF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 53/163 (32.52%), Postives = 79/163 (48.47%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAME 651
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L        +   T I    + K D      KV  ++ +VL + TVI+ATGA  +KL  PG +   N+G++ C  CDG  P+F +K +AVIGGG+S +E
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTD---EAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVE 359          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: AHPF_STAAR (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus aureus (strain MRSA252) GN=ahpF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 53/163 (32.52%), Postives = 79/163 (48.47%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAME 651
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L        +   T I    + K D      KV  ++ +VL + TVI+ATGA  +KL  PG +   N+G++ C  CDG  P+F +K +AVIGGG+S +E
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTD---EAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVE 359          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: AHPF_STAAN (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus aureus (strain N315) GN=ahpF PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 53/163 (32.52%), Postives = 79/163 (48.47%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAME 651
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L        +   T I    + K D      KV  ++ +VL + TVI+ATGA  +KL  PG +   N+G++ C  CDG  P+F +K +AVIGGG+S +E
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTD---EAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVE 359          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: AHPF_STAAM (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ahpF PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 53/163 (32.52%), Postives = 79/163 (48.47%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAME 651
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L        +   T I    + K D      KV  ++ +VL + TVI+ATGA  +KL  PG +   N+G++ C  CDG  P+F +K +AVIGGG+S +E
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTD---EAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVE 359          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: AHPF_STAAC (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus aureus (strain COL) GN=ahpF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 53/163 (32.52%), Postives = 79/163 (48.47%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAME 651
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L        +   T I    + K D      KV  ++ +VL + TVI+ATGA  +KL  PG +   N+G++ C  CDG  P+F +K +AVIGGG+S +E
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTD---EAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVE 359          
BLAST of FC929852 vs. ExPASy Swiss-Prot
Match: AHPF_STAA8 (Alkyl hydroperoxide reductase subunit F OS=Staphylococcus aureus (strain NCTC 8325) GN=ahpF PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 53/163 (32.52%), Postives = 79/163 (48.47%), Query Frame = 1
Query:  175 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI---LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAME 651
            V I+G GP             L+     G +A+ I  GGQ+  T+ +ENF    +        +L        +   T I    + K D      KV  ++ +VL + TVI+ATGA  +KL  PG +   N+G++ C  CDG  P+F +K +AVIGGG+S +E
Sbjct:  208 VLIVGGGPASGSAAIYTARKGLRT----GIVADRI--GGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTD---EAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDG--PLFENKDVAVIGGGNSGVE 359          
The following BLAST results are available for this feature:
BLAST of FC929852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TRXB_METJA1.959e-1533.53Putative thioredoxin reductase OS=Methanocaldococc... [more]
AHPF_STAES2.241e-1132.52Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAEQ2.241e-1132.52Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAAW8.517e-1132.52Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAAS8.517e-1132.52Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAAR8.517e-1132.52Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAAN8.517e-1132.52Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAAM8.517e-1132.52Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAAC8.517e-1132.52Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]
AHPF_STAA88.517e-1132.52Alkyl hydroperoxide reductase subunit F OS=Staphyl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001B04EF PostHarvC1 Citrus clementina cDNA clone C34001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929852 ID=FC929852; Name=FC929852; organism=Citrus clementina; type=EST; length=704bp
GATAGAAGCCCTAATGGTAATACTACTCTTAAGCTGAGATCACTGCTGAC
CAAAGCACGAACCTTTTTTGGAATTGTAACTACTTCCTCCGCCGCGGCCG
CCGCTTCTTTTTCCGCAACCACCGCTCCCAAGATCAGCAACGCCATGGAC
GAAATACAAACCCTCAAGACCAAAGTCTGCATCATTGGCAGCGGCCCCGC
CGCCCACACTGCCGCCATCTATGCCGCCCGAGCCGAGCTCAAACCCATTC
TCTTCGAGGGCTGGATGGCCAATGATATTGCGCCTGGTGGCCAACTCACC
ACCACCTCCGACGTCGAGAATTTCCCCGGTTTTCCCCAGGGCATTCTCGG
GGGCGACTTGATGGATCGCTGCCGCAACCAGTCTCTCCGTTTCGGCACCC
AGATTTTTACCGAGACCGTTTCCAAAGTCGACTTCAAATCCCGCCCTTTT
AAAGTTTTTACAGATTCCAAATCCGTTCTTGCTGATACTGTTATTGTCGC
CACCGGCGCCGTTGCCAAAAAGTTGCAATTCCCCGGTTCAGATGCGTTCT
GGAACCGTGGCATATCGGCCTGCGCAGTGTGTGATGGAGCCGCTCCGATA
TTTCGGGACAAACCCTTGGCCGTGATTGGTGGCGGGGATTCAGCCATGGA
AGAAAGCCACTTTTTGACAAAGTACGGATCAAAGTTTATATATTCATAGG
AGGG
back to top