FC929854

Overview
NameFC929854
Unique NameFC929854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_OCHA4 (Bifunctional protein folD OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=folD PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.914e-50
Identity = 108/218 (49.54%), Postives = 140/218 (64.22%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKR-SGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            A +IDGK +A+ + S +  E   L    G VPG+AVVIVG    SQ YV+ K K   E G  S   DLPE  SE EL+  +  LN  P +HGILVQLPLPKHI+  +V+  IS +KDVDGFH +N+GKL     +  F+PCTP G + +++R  G  + G  AVV+GRSNIVG P+  LLL A+ATVT+ HS T D  +I R ADI++AA G+  M+K
Sbjct:    2 AQLIDGKKLAEDVVSTVKTETEKLVAATGIVPGIAVVIVGEDPASQVYVASKSKKAKECGFHSVQHDLPETASEQELLDLIESLNNDPAIHGILVQLPLPKHIDSGRVIQTISPDKDVDGFHFINVGKLGTGEVETAFVPCTPAGAMIMIERIHGRDLSGLNAVVIGRSNIVGKPMFNLLLAANATVTVAHSRTKDLPAIARTADILVAAVGRPQMVK 219          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_OCEIH (Bifunctional protein folD OS=Oceanobacillus iheyensis GN=folD PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.914e-50
Identity = 104/216 (48.15%), Postives = 149/216 (68.98%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            AT+++GK +++ ++ ++  EV  L EK G  P L V++VG    S+SYV  K KACA  GI S  I+LPE +S+ EL+  + E N    VHGILVQLPLP  ++E+K++  IS  KDVDGFHP+N+GK+ M G D  F+PCTP G L +L+   ++++GK AV++GRSNIVG P+ LLLL+ +ATVT  HS T + + I ++ADI+I A G++  I
Sbjct:    2 ATLLNGKELSEELKQKMKIEVDELKEK-GLTPHLTVILVGDNPASKSYVKGKEKACAVTGISSNLIELPENISQDELLQIIDEQNNDDSVHGILVQLPLPDQMDEQKIIHAISPAKDVDGFHPINVGKM-MTGED-TFIPCTPYGILTMLRSKDISLEGKHAVIIGRSNIVGKPIGLLLLQENATVTYTHSRTKNLQEITKQADILIVAIGRAHAI 214          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_LACLA (Bifunctional protein folD OS=Lactococcus lactis subsp. lactis GN=folD PE=3 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.914e-50
Identity = 106/215 (49.30%), Postives = 144/215 (66.98%), Query Frame = 3
Query:   72 IIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            +IDGKA+A  +++E+  +V  L E    VPGLAV++VG    SQ YV  K +    +G+ S  + LPE VSE EL+  + + N     HGILVQLPLP+HI+EEKVL  I  EKDVDGFHP+N+G+L     +PL +P TP G +E+ +   V + GKRAVV+GRSNIVG P++ LL+ ADATVTI HS T +   + +EAD+++ A G+  MIK
Sbjct:    3 LIDGKALAAKMQAELKVKVDKLKEA-DNVPGLAVILVGEDPASQIYVRNKARQATAIGLNSSVVRLPETVSEQELLDLIEQYNQSEQWHGILVQLPLPEHISEEKVLLAIDPEKDVDGFHPMNMGRL--WSGNPLMIPSTPAGIMEMFREYDVELSGKRAVVIGRSNIVGKPMAQLLMMADATVTIAHSKTENLRELTKEADVLVVAIGRDRMIK 214          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_CUPTR (Bifunctional protein folD OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=folD PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.914e-50
Identity = 113/216 (52.31%), Postives = 147/216 (68.06%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A +IDG A+A+ IRSE A+    L+E+ G  PGLAVV+VG    SQ YV  K KAC + G  S     P  +SEA+L++++ ELN  P +HGILVQLPLPKHI+  KVL  I+ EKDVDGFH  N G L M G  PLF PCTP GC+++L+     ++G RAVVVG SNIVG P+++LLL+  ATVTI +S T D  +  R+AD+V+AA G+  +I
Sbjct:    3 AQLIDGNALAKQIRSEAAQRAARLTER-GHQPGLAVVLVGEDPASQVYVRNKVKACEDNGFHSSLDRYPADLSEADLLARIDELNRDPRIHGILVQLPLPKHIDSHKVLEAIAPEKDVDGFHVANAGAL-MTGA-PLFRPCTPYGCMKMLESIQYPLRGARAVVVGASNIVGKPMAMLLLQGGATVTICNSKTRDIGAHTRDADVVVAAVGKRNLI 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BACCN (Bifunctional protein folD OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=folD PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.914e-50
Identity = 106/216 (49.07%), Postives = 148/216 (68.52%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMI 713
            A II G  VA+  R+++ EEV  L E+ G VPGLAV++VG    S+SY+  K+K C +VGI S  I+ P+ ++E  L++++  LN    ++GILVQLPLPKHI E+ ++  IS +KDVDGFHP+NIG++ M G+D  FLPCTP G LEL+K + + I GK  VV+GRSNIVG PV  L L  +ATVT  HS T + + + + ADI++ A G+  M+
Sbjct:    3 AVIIKGNEVAEKKRAQLKEEVVKLKEQ-GIVPGLAVILVGEDPASRSYIKGKQKGCEQVGIYSELIEFPDTITEERLLAEIDRLNEDDRINGILVQLPLPKHIEEKAIIERISPKKDVDGFHPINIGRM-MTGQD-TFLPCTPHGILELVKETNIDISGKHVVVIGRSNIVGKPVGQLFLNENATVTYCHSKTKNIKELSKLADILVVAVGRPKMV 215          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_AZOC5 (Bifunctional protein folD OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=folD PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.914e-50
Identity = 112/214 (52.34%), Postives = 142/214 (66.36%), Query Frame = 3
Query:   75 IDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            IDGKA A  +R+ IAEEV +L   +   PGLAVV+VG    SQ YV  K    AE G+ SF+  LP   +EA+L++ V +LNA P V+GILVQLPLP H++  KVL  I   KDVDGFH +N G+LA+ G D L +PCTP GC+ LLK     + G  AVVVGRSNIVG P + LLL+ D TVTI HS T D   + R+ADI++AA G+  M++
Sbjct:    7 IDGKAFAAGLRARIAEEVAVLVRDHDLKPGLAVVLVGEDPASQVYVRNKAAQTAEAGMASFEYKLPADTAEADLLALVEKLNADPAVNGILVQLPLPAHLDSMKVLAAIDPAKDVDGFHVVNAGRLAV-GLDAL-VPCTPLGCVMLLKHHLGNLSGLNAVVVGRSNIVGKPAAQLLLREDCTVTIAHSRTRDLPGMCRQADILVAAVGRPEMVR 218          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BURCH (Bifunctional protein folD OS=Burkholderia cenocepacia (strain HI2424) GN=folD PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.500e-50
Identity = 106/212 (50.00%), Postives = 145/212 (68.40%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A +IDG A+++T+R++ AE    L+ + G  PGLAV++VG    S+ YV  K KAC + G  S     P  +SEA+L++++ ELN  P +HGILVQLPLP HI+  KV+  I+ EKDVDGFH  N G L M G+ PLF PCTP G +++ +  G+ ++G  AVV+GRSNIVG P++++LL A ATVTI HS T D  +  READIV+AA G+
Sbjct:    3 ALLIDGNALSKTLRAQAAERAAALTAR-GHQPGLAVILVGANPASEVYVRNKIKACEDNGFFSLKDAYPATLSEADLLARIDELNRDPKIHGILVQLPLPAHIDSHKVIEAIAPEKDVDGFHVANAGAL-MTGK-PLFRPCTPYGVMKMFEAHGIALQGANAVVIGRSNIVGKPMAMMLLDAGATVTICHSKTRDLAAHTREADIVVAAVGK 211          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BURCA (Bifunctional protein folD OS=Burkholderia cenocepacia (strain AU 1054) GN=folD PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.500e-50
Identity = 106/212 (50.00%), Postives = 145/212 (68.40%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            A +IDG A+++T+R++ AE    L+ + G  PGLAV++VG    S+ YV  K KAC + G  S     P  +SEA+L++++ ELN  P +HGILVQLPLP HI+  KV+  I+ EKDVDGFH  N G L M G+ PLF PCTP G +++ +  G+ ++G  AVV+GRSNIVG P++++LL A ATVTI HS T D  +  READIV+AA G+
Sbjct:    3 ALLIDGNALSKTLRAQAAERAAALTAR-GHQPGLAVILVGANPASEVYVRNKIKACEDNGFFSLKDAYPATLSEADLLARIDELNRDPKIHGILVQLPLPAHIDSHKVIEAIAPEKDVDGFHVANAGAL-MTGK-PLFRPCTPYGVMKMFEAHGIALQGANAVVIGRSNIVGKPMAMMLLDAGATVTICHSKTRDLAAHTREADIVVAAVGK 211          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD_BACP2 (Bifunctional protein folD OS=Bacillus pumilus (strain SAFR-032) GN=folD PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.500e-50
Identity = 113/218 (51.83%), Postives = 146/218 (66.97%), Query Frame = 3
Query:   66 ATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDID-LPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQSMMIK 716
            ATIIDGK  A+  R ++A+EV  L +K G  PGLAV+++G    S SYV  K+KA   +G+  F +D L   ++E EL+  + + NA    HGILVQLPLPKHI+E+ V+  IS EKDVDGFHPLNIGK+ + G D  FLPCTP G +ELL ++GV + GK  VVVGRSNIVG PV  LLL  +ATVT  HS T +      +ADI++ A G++  IK
Sbjct:    3 ATIIDGKETAKEKREQLAKEVEELKQK-GVTPGLAVILIGDDPASLSYVRGKKKAAEAMGMH-FQLDHLDASLTEEELLQLIDQYNANDQFHGILVQLPLPKHISEKAVIERISPEKDVDGFHPLNIGKMLL-GED-TFLPCTPAGIVELLNKTGVNLSGKEVVVVGRSNIVGKPVGQLLLNENATVTYCHSRTANISEHTLKADILVVAVGRANFIK 216          
BLAST of FC929854 vs. ExPASy Swiss-Prot
Match: FOLD2_COLP3 (Bifunctional protein folD 2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=folD2 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.500e-50
Identity = 106/213 (49.77%), Postives = 139/213 (65.26%), Query Frame = 3
Query:   63 KATIIDGKAVAQTIRSEIAEEVRLLSEKYGKVPGLAVVIVGGRKDSQSYVSMKRKACAEVGIKSFDIDLPEQVSEAELISKVHELNAMPDVHGILVQLPLPKHINEEKVLGEISLEKDVDGFHPLNIGKLAMKGRDPLFLPCTPKGCLELLKRSGVTIKGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTPDPESIVREADIVIAAAGQ 701
            +A++IDGKA+A+ +R  + EEV L      +VPGLAV++VG    SQ YV  KRKAC EVG  S   DLP   SE EL++ V ELN    + GILVQLPLPK++N + ++  I+  KDVDGFHP N+GKL +  R P   PCTPKG + L++ +G+  KG  A+V+G SNIVG P+ L LL A  TVT  H  T D E  VR AD+++ A G+
Sbjct:    2 RASLIDGKAIAKKLRDSVKEEVNLRISNGQRVPGLAVILVGCDPASQVYVGSKRKACEEVGFISRSYDLPHTTSEQELLALVSELNNDDSIDGILVQLPLPKNLNADLIIEHINPLKDVDGFHPSNVGKLVL--RQPGLRPCTPKGIVTLIESTGIDPKGLDALVIGASNIVGRPMGLELLLAKCTVTTTHRFTKDLEGKVRNADLLVVAVGK 212          
The following BLAST results are available for this feature:
BLAST of FC929854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_OCHA41.914e-5049.54Bifunctional protein folD OS=Ochrobactrum anthropi... [more]
FOLD_OCEIH1.914e-5048.15Bifunctional protein folD OS=Oceanobacillus iheyen... [more]
FOLD_LACLA1.914e-5049.30Bifunctional protein folD OS=Lactococcus lactis su... [more]
FOLD_CUPTR1.914e-5052.31Bifunctional protein folD OS=Cupriavidus taiwanens... [more]
FOLD_BACCN1.914e-5049.07Bifunctional protein folD OS=Bacillus cereus subsp... [more]
FOLD_AZOC51.914e-5052.34Bifunctional protein folD OS=Azorhizobium caulinod... [more]
FOLD_BURCH2.500e-5050.00Bifunctional protein folD OS=Burkholderia cenocepa... [more]
FOLD_BURCA2.500e-5050.00Bifunctional protein folD OS=Burkholderia cenocepa... [more]
FOLD_BACP22.500e-5051.83Bifunctional protein folD OS=Bacillus pumilus (str... [more]
FOLD2_COLP32.500e-5049.77Bifunctional protein folD 2 OS=Colwellia psychrery... [more]

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Properties
Property NameValue
Genbank descriptionC34001B06EF PostHarvC1 Citrus clementina cDNA clone C34001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929854 ID=FC929854; Name=FC929854; organism=Citrus clementina; type=EST; length=717bp
GGAGCAATTAATTAGAGTTATCCATCTCTAGTTCTAGAATAATGGCGGCA
CCGTCAGATCAGAAGGCCACCATAATCGACGGCAAAGCCGTCGCTCAGAC
CATCCGATCTGAAATCGCAGAAGAAGTCCGCCTCCTTTCTGAAAAATATG
GCAAGGTGCCTGGACTGGCAGTAGTAATAGTGGGTGGCAGAAAAGACTCT
CAAAGCTATGTGAGCATGAAGAGAAAGGCTTGTGCTGAAGTTGGGATTAA
GTCTTTTGACATAGACCTCCCCGAGCAAGTCTCCGAGGCCGAGCTTATCA
GCAAGGTTCACGAGCTTAACGCAATGCCTGATGTACATGGTATATTGGTT
CAACTTCCATTGCCGAAGCATATAAATGAAGAGAAAGTTTTAGGTGAGAT
AAGCCTTGAGAAGGATGTTGATGGCTTTCATCCTTTGAACATTGGCAAGC
TCGCAATGAAAGGCAGAGACCCCCTCTTCCTTCCTTGCACGCCCAAGGGA
TGCCTTGAACTTCTGAAACGAAGTGGTGTTACTATAAAGGGTAAAAGGGC
TGTTGTGGTGGGTCGAAGTAACATTGTTGGACTCCCAGTTTCATTGCTGC
TGCTGAAAGCTGATGCCACTGTAACCATAGTCCATTCACATACCCCTGAT
CCTGAAAGTATCGTTCGTGAAGCTGACATTGTTATTGCTGCAGCCGGACA
AAGCATGATGATCAAGG
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