FC929855

Overview
NameFC929855
Unique NameFC929855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11050 contig Ccv1_Contig11050:765..1476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHEPA (NAD-dependent malic enzyme OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=sfcA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.248e-43
Identity = 98/237 (41.35%), Postives = 145/237 (61.18%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKE---------LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGD 688
            G+EY E +  FM AV + + +  LIQFEDF   NA  LLE+Y   +  FNDDIQGTA+V +  L++A K     L++QR  FLGAG AG GIAE I  ++  +  +   + RK++++VD  G++  S + +L  F++  A   + +           L+D VN  KPT+LIG SG    FT+E+++AM S  ++PI+F LSNPTS+ E T ++   W+QG+A+ A+GSPF+P    D
Sbjct:  217 GEEYTEFVEAFMQAVHRRWPDA-LIQFEDFAQKNAMPLLERYKDQYCCFNDDIQGTAAVTVGSLLAACKAAKTQLSEQRITFLGAGSAGCGIAEAIVAQMVSE-GISEAQARKQVFMVDRWGML-QSNMPNLLPFQQKLAQNCDDITSWDNFSDNISLLDVVNNAKPTVLIGVSGAPGLFTEEIIKAMHSHCKRPIVFPLSNPTSRVEATPKDILHWTQGQALVATGSPFEPVVVDD 450          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_ALISL (NAD-dependent malic enzyme OS=Aliivibrio salmonicida (strain LFI1238) GN=sfcA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.248e-43
Identity = 99/240 (41.25%), Postives = 138/240 (57.50%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI---------VSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            G EY + + EF+ AV++ + +  L+QFEDF   NA  LLE+Y      FNDDIQGTA+V +  L++A K  G SLA QR  FLGAG AG GIAE I  ++  +  +   + R ++++VD  GL+            RL       K W  E EP   L D ++  KPT+LIG SG    F+KEV++ M    E+PI+F LSNPTS+ E T  +   W+ G+A+ A+GSPFDP  +    +
Sbjct:  217 GNEYKDFVEEFIQAVQRRWPQA-LVQFEDFAQKNAMPLLERYKNRICCFNDDIQGTAAVTVGSLLAACKAAGSSLAQQRVTFLGAGSAGCGIAEAIIAQMVSE-GISDAQARSQVYMVDRWGLLQEGMPNLLDFQQRLVQKAENTKEWVSE-EPNYSLFDVMHNAKPTVLIGVSGAPGLFSKEVIQEMHKHCERPIVFPLSNPTSRVEATPNDIIRWTDGQALVATGSPFDPVTHNGQTY 453          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHEDO (NAD-dependent malic enzyme OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=sfcA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.936e-43
Identity = 98/240 (40.83%), Postives = 141/240 (58.75%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK---------PWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            GQ+YA+ +  FM AV + + + +LIQFEDF   NA  LLE+Y   +  FNDDIQGTA+V +  L++A K     L+ QR +FLGAG AG GIAE I  ++  +  +   + R ++++VD  GL+  +    L   +K          W  E + V  L++ +N  KPT+LIG SG    FT+ V+ AM     +PI+F LSNPTS+ E T E+   W+ G+A+ A+GSPF+P   GD  F
Sbjct:  217 GQDYADFVEAFMEAVHRRWPD-VLIQFEDFAQRNAMPLLERYKDQYCCFNDDIQGTAAVTVGSLLAASKAANTQLSKQRVVFLGAGSAGCGIAEAIVAQMISE-GISEAQARSQVFMVDRLGLLQDNTANLLPFQQKLAQSSATVSQWHIEGDSVS-LLNVINNAKPTVLIGVSGSPGQFTEAVIRAMHLHCPRPIVFPLSNPTSRVEATPEDVLNWTNGQALVATGSPFEPVTIGDETF 453          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_BDEBA (NAD-dependent malic enzyme OS=Bdellovibrio bacteriovorus GN=sfcA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.936e-43
Identity = 99/240 (41.25%), Postives = 144/240 (60.00%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVK---------ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            G+EY + +  F+ AVK+ + + +L+QFEDF   NA  +L++Y      FNDDIQGTA+V +  LI+A +  GG L DQR +FLGAG AG GIAE I  E+ K   +  E+ R+++++VD  GL+ + ++ +L  F+ P   + E +           L+D V   KPTILIG S Q   FT+EV+  M S  E PI+  LSNPTS+ E T  +   W+ G+A+ A+GSPF P    D ++
Sbjct:  220 GKEYEDFVDAFVQAVKRRWPD-VLLQFEDFAQKNASPILKRYRDEICSFNDDIQGTAAVTVGCLIAASRANGGRLRDQRVVFLGAGSAGCGIAEQIIAEM-KHEGLSDEQARQRVFMVDRFGLL-TDKMPNLLEFQSPLVQKTETLAGWEVTNDEISLLDTVRNAKPTILIGVSAQPGLFTEEVIRTMQSHCEHPIVMPLSNPTSRVEATPADILRWTDGKALVATGSPFMPVHMNDQIY 456          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHIFL (NAD-dependent malic enzyme OS=Shigella flexneri GN=sfcA PE=3 SV=4)

HSP 1 Score: 174.866 bits (442), Expect = 3.834e-43
Identity = 95/238 (39.92%), Postives = 145/238 (60.92%), Query Frame = 2
Query:   11 EYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE---------PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            EY E + EF+ AVKQ + + +L+QFEDF   NA  LL +Y      FNDDIQGTA+V +  LI+A +  GG L++++ +FLGAG AG GIAE+I  +  ++  +  E  R+K+++VD  GL+ + ++ +L  F+     + E          V  L+D V  +KP ILIG SGQ   FT+E++  M     +PI+  LSNPTS+ E T ++   W++G A+ A+GSPF+P  + D ++
Sbjct:  222 EYYEFVDEFIQAVKQRWPD-VLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAAVTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIIAQTQRE-GLSEEAARQKVFMVDRFGLL-TDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIY 456          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHIF8 (NAD-dependent malic enzyme OS=Shigella flexneri serotype 5b (strain 8401) GN=sfcA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.834e-43
Identity = 95/238 (39.92%), Postives = 145/238 (60.92%), Query Frame = 2
Query:   11 EYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE---------PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            EY E + EF+ AVKQ + + +L+QFEDF   NA  LL +Y      FNDDIQGTA+V +  LI+A +  GG L++++ +FLGAG AG GIAE+I  +  ++  +  E  R+K+++VD  GL+ + ++ +L  F+     + E          V  L+D V  +KP ILIG SGQ   FT+E++  M     +PI+  LSNPTS+ E T ++   W++G A+ A+GSPF+P  + D ++
Sbjct:  222 EYYEFVDEFIQAVKQRWPD-VLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAAVTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIIAQTQRE-GLSEEAARQKVFMVDRFGLL-TDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIY 456          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_ESCF3 (NAD-dependent malic enzyme OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=sfcA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.834e-43
Identity = 95/238 (39.92%), Postives = 145/238 (60.92%), Query Frame = 2
Query:   11 EYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE---------PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            EY E + EF+ AVKQ + + +L+QFEDF   NA  LL +Y      FNDDIQGTA+V +  LI+A +  GG L++++ +FLGAG AG GIAE+I  +  ++  +  E  R+K+++VD  GL+ + ++ +L  F+     + E          V  L+D V  +KP ILIG SGQ   FT+E++  M     +PI+  LSNPTS+ E T ++   W++G A+ A+GSPF+P  + D ++
Sbjct:  222 EYYEFVDEFIQAVKQRWPD-VLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAAVTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIIAQTQRE-GLSEEAARQKVFMVDRFGLL-TDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIY 456          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_ECOUT (NAD-dependent malic enzyme OS=Escherichia coli (strain UTI89 / UPEC) GN=sfcA PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.834e-43
Identity = 95/238 (39.92%), Postives = 145/238 (60.92%), Query Frame = 2
Query:   11 EYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE---------PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            EY E + EF+ AVKQ + + +L+QFEDF   NA  LL +Y      FNDDIQGTA+V +  LI+A +  GG L++++ +FLGAG AG GIAE+I  +  ++  +  E  R+K+++VD  GL+ + ++ +L  F+     + E          V  L+D V  +KP ILIG SGQ   FT+E++  M     +PI+  LSNPTS+ E T ++   W++G A+ A+GSPF+P  + D ++
Sbjct:  222 EYYEFVDEFIQAVKQRWPD-VLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAAVTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIIAQTQRE-GLSEEAARQKVFMVDRFGLL-TDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIY 456          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_ECOSM (NAD-dependent malic enzyme OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.834e-43
Identity = 95/238 (39.92%), Postives = 145/238 (60.92%), Query Frame = 2
Query:   11 EYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE---------PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            EY E + EF+ AVKQ + + +L+QFEDF   NA  LL +Y      FNDDIQGTA+V +  LI+A +  GG L++++ +FLGAG AG GIAE+I  +  ++  +  E  R+K+++VD  GL+ + ++ +L  F+     + E          V  L+D V  +KP ILIG SGQ   FT+E++  M     +PI+  LSNPTS+ E T ++   W++G A+ A+GSPF+P  + D ++
Sbjct:  222 EYYEFVDEFIQAVKQRWPD-VLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAAVTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIIAQTQRE-GLSEETARQKVFMVDRFGLL-TDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIY 456          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_ECOLU (NAD-dependent malic enzyme OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.834e-43
Identity = 95/238 (39.92%), Postives = 145/238 (60.92%), Query Frame = 2
Query:   11 EYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE---------PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            EY E + EF+ AVKQ + + +L+QFEDF   NA  LL +Y      FNDDIQGTA+V +  LI+A +  GG L++++ +FLGAG AG GIAE+I  +  ++  +  E  R+K+++VD  GL+ + ++ +L  F+     + E          V  L+D V  +KP ILIG SGQ   FT+E++  M     +PI+  LSNPTS+ E T ++   W++G A+ A+GSPF+P  + D ++
Sbjct:  222 EYYEFVDEFIQAVKQRWPD-VLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAAVTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIIAQTQRE-GLSEEAARQKVFMVDRFGLL-TDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIY 456          
The following BLAST results are available for this feature:
BLAST of FC929855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
MAO1_SHEPA2.248e-4341.35NAD-dependent malic enzyme OS=Shewanella pealeana ... [more]
MAO1_ALISL2.248e-4341.25NAD-dependent malic enzyme OS=Aliivibrio salmonici... [more]
MAO1_SHEDO2.936e-4340.83NAD-dependent malic enzyme OS=Shewanella denitrifi... [more]
MAO1_BDEBA2.936e-4341.25NAD-dependent malic enzyme OS=Bdellovibrio bacteri... [more]
MAO1_SHIFL3.834e-4339.92NAD-dependent malic enzyme OS=Shigella flexneri GN... [more]
MAO1_SHIF83.834e-4339.92NAD-dependent malic enzyme OS=Shigella flexneri se... [more]
MAO1_ESCF33.834e-4339.92NAD-dependent malic enzyme OS=Escherichia ferguson... [more]
MAO1_ECOUT3.834e-4339.92NAD-dependent malic enzyme OS=Escherichia coli (st... [more]
MAO1_ECOSM3.834e-4339.92NAD-dependent malic enzyme OS=Escherichia coli (st... [more]
MAO1_ECOLU3.834e-4339.92NAD-dependent malic enzyme OS=Escherichia coli O17... [more]

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Properties
Property NameValue
Genbank descriptionC34001B07EF PostHarvC1 Citrus clementina cDNA clone C34001B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929855 ID=FC929855; Name=FC929855; organism=Citrus clementina; type=EST; length=712bp
TATTGGTCAGGAATATGCTGAACTGCTACATGAATTCATGACAGCTGTGA
AGCAGAATTATGGGGAGAGAATTCTCATTCAGTTTGAAGACTTTGTAAAC
CACAATGCCTTTGATCTGCTTGAAAAATATGGCACTACTCATCTTGTTTT
CAATGATGATATTCAGGGGACAGCATCTGTGGTCCTTGCAGGTCTTATTT
CAGCGATGAAATTTCTTGGAGGAAGCTTAGCCGACCAAAGATTTTTATTC
CTTGGTGCAGGAGAAGCTGGCACTGGAATAGCAGAACTCATAGCTCTTGA
GATATCCAAACAGACAAATATGCCGCTAGAAGAGACTCGCAAGAAGATTT
GGCTTGTGGATTCAAAGGGATTGATCGTCAGTTCCCGTTTAGAATCTCTC
CAACATTTCAAAAAGCCGTGGGCTCATGAACATGAACCTGTTAAGGAACT
AGTAGATGCCGTTAATGCAATCAAGCCAACAATTCTGATTGGAACATCAG
GACAAGGTCGAACATTTACTAAAGAAGTTGTTGAGGCTATGGCCTCCTTG
AATGAGAAACCCATTATTTTTTCTCTTTCCAACCCAACTTCACAGTCTGA
ATGCACCGCAGAAGAAGCCTATACGTGGAGCCAGGGCCGAGCCATTTTTG
CAAGTGGGAGCCCCTTTGACCCTTTCGAATATGGGGACAATGTTTTTGTG
CCTGGCCAGGCA
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