FC929855

Overview
NameFC929855
Unique NameFC929855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11050 contig Ccv1_Contig11050:765..1476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHEB5 (NAD-dependent malic enzyme OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=sfcA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.239e-42
Identity = 98/232 (42.24%), Postives = 141/232 (60.78%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKE---------LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDP 673
            G+EYAE +  FM AV   + +  LIQFEDF   NA  +LE+Y   +  FNDDIQGTA+V +  L++A K  G  L  QR  FLGAG AG GIAE I  ++  +  +  E+ R ++ +VD  GL++ + + +L  F++  A +   ++          L+D VN  KPT+LIG SG    FT+E++ AM S   +PIIF LSNPTS+ E T ++   W+ G+A+ A+GSPF+P
Sbjct:  217 GEEYAEFIEAFMQAVHVRWPDT-LIQFEDFAQKNAMPILERYKDRYCCFNDDIQGTAAVAVGSLLAACKAAGTELNQQRIAFLGAGSAGCGIAEAIVAQMVSE-GISDEQARTQVCMVDRWGLLLDN-MPNLLPFQQKLAQKCTNIQNWSNFSDNISLLDVVNNTKPTVLIGVSGVPGLFTEEIIRAMHSHCARPIIFPLSNPTSRVEATPKDILHWTSGQALVATGSPFEP 445          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHEB2 (NAD-dependent malic enzyme OS=Shewanella baltica (strain OS223) GN=sfcA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.239e-42
Identity = 98/232 (42.24%), Postives = 141/232 (60.78%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKE---------LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDP 673
            G+EYAE +  FM AV   + +  LIQFEDF   NA  +LE+Y   +  FNDDIQGTA+V +  L++A K  G  L  QR  FLGAG AG GIAE I  ++  +  +  E+ R ++ +VD  GL++ + + +L  F++  A +   ++          L+D VN  KPT+LIG SG    FT+E++ AM S   +PIIF LSNPTS+ E T ++   W+ G+A+ A+GSPF+P
Sbjct:  217 GEEYAEFIEAFMQAVHVRWPDT-LIQFEDFAQKNAMPILERYKDRYCCFNDDIQGTAAVAVGSLLAACKAAGTELNQQRIAFLGAGSAGCGIAEAIVAQMVSE-GISDEQARTQVCMVDRWGLLLDN-MPNLLPFQQKLAQKCTNIQNWSNFSDNISLLDVVNNTKPTVLIGVSGVPGLFTEEIIRAMHSHCARPIIFPLSNPTSRVEATPKDILHWTSGQALVATGSPFEP 445          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_PSYA2 (NAD-dependent malic enzyme OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=sfcA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.537e-42
Identity = 100/239 (41.84%), Postives = 139/239 (58.16%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKE--------LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            G EY E +  F+ AVK+ + E +L+QFEDF   NA  LL +Y      FNDDIQGTA+V +  LI+A    G  L+ Q+  FLGAG AG GIAE I  ++ ++  +  E+ RK++++VD  GL+  S  E LQ F+ P   +   ++         L   V   K T+L G SGQ   FT+EV+EA+    E PI+  LSNPTS+ E T +E  +WS+G+AI A+GSPF    + D  F
Sbjct:  216 GDEYNEFVDLFIQAVKRRWPE-VLLQFEDFAQENATPLLNRYRDQLCCFNDDIQGTAAVSVGTLIAACLNKGQKLSQQKIAFLGAGSAGCGIAEHIIRQMQRE-GLTEEQARKQVFMVDRYGLLTDSMTE-LQKFQAPLVQKESAIESWDKSQKLGLAQVVKQAKITVLFGVSGQKGLFTREVIEALCVNTEHPIVLPLSNPTSRVEATPQEVTSWSRGKAIVATGSPFPNTTFEDQSF 451          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_PECCP (NAD-dependent malic enzyme OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=sfcA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.231e-42
Identity = 100/238 (42.02%), Postives = 137/238 (57.56%), Query Frame = 2
Query:   11 EYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKE---------LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            EY E + EF+ AVK+ +   +L+QFEDF   NA  LL +Y      FNDDIQGTA+V L  LI+A +  G  L DQ   FLGAG AG GIAE I  ++ K   +  EE R ++++VD  GL+ + +L +L  F+     + E +           L++ V   KPTILIG SGQ   FT+E++  M     +PI+  LSNPTS+ E   E+   W++G A+ A+GSPF P  Y D VF
Sbjct:  222 EYYEFVDEFIQAVKRRW-PNVLLQFEDFAQKNATPLLNRYRDEICSFNDDIQGTAAVALGSLIAASRAAGTQLRDQTVAFLGAGSAGCGIAEQIIAQM-KSEGLSDEEARARVFMVDRFGLL-TDKLPNLLDFQSKLVQKSELLANWDCNSDAISLLEVVRNAKPTILIGVSGQPGLFTEEIIREMHKHCARPIVMPLSNPTSRVEARPEDIIRWTEGAALVATGSPFSPVNYQDKVF 456          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_AERHH (NAD-dependent malic enzyme OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=sfcA PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 9.444e-42
Identity = 102/242 (42.15%), Postives = 146/242 (60.33%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI---VSSRLESLQHFKKPWAHEHE-PVKE---LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQ 709
            G+EYAE +  F+ AVK+ + + IL+QFEDF  +NA  LL +Y      FNDDIQGTA+V L  LI+A K  G  L+++R  FLGAG AG GIAE I  ++ K   +   + R ++++VD  GLI   + ++L+  +   +P     + PV +   L++ +   +P ILIG SGQ   FT+EVV+ M     +PIIF LSNPTS+ E T  +   W+ G+A+ A+GSPF P EY    +V  Q
Sbjct:  220 GEEYAEFVDAFIQAVKRRWPD-ILLQFEDFAQNNAMPLLNRYKNELCCFNDDIQGTAAVTLGSLIAACKASGAKLSEKRVAFLGAGSAGCGIAEQIVAQM-KAEGLTDAQARSRVFMVDRFGLITDKIPNQLDFQRRLSQPVERIADWPVGDNISLLEVMEHGRPDILIGVSGQPGLFTEEVVKTMHKHCARPIIFPLSNPTSRVEATPADLIRWTDGQALVATGSPFAPVEYKGKRYVIAQ 459          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SALAR (NAD-dependent malic enzyme OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=sfcA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.233e-41
Identity = 97/242 (40.08%), Postives = 142/242 (58.68%), Query Frame = 2
Query:   11 EYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVS-------------SRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 697
            EY   + EF+ AVKQ + + IL+QFEDF   NA  LL +Y      FNDDIQGTA+V +  LI+A +  G  L++Q+ +FLGAG AG GIAE I  +  ++  +  +  R+K+++VD  GL+                + ++LQH    W  E++ V  L+D V  +KP ILIG SGQ   FT+E++  M     +PI+  LSNPTS+ E T ++   W++G A+ A+GSPF P  + D V+
Sbjct:  222 EYYAFVDEFIQAVKQRWPD-ILLQFEDFAQKNAMPLLTRYRDEICSFNDDIQGTAAVTVGTLIAASRAAGSQLSEQKIVFLGAGSAGCGIAEQIIAQTQRE-GLSEDAARQKVFMVDRFGLLTDRMPNLLSFQTKLVQKCDNLQH----WDTEND-VLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFSPVIWKDKVY 456          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_AERS4 (NAD-dependent malic enzyme OS=Aeromonas salmonicida (strain A449) GN=sfcA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.233e-41
Identity = 102/242 (42.15%), Postives = 146/242 (60.33%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI---VSSRLESLQHFKKPWAHEHE-PVKE---LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQ 709
            G+EYAE +  F+ AVK+ + + IL+QFEDF  +NA  LL +Y      FNDDIQGTA+V L  LI+A K  G  L+++R  FLGAG AG GIAE I  ++ K   +   + R ++++VD  GLI   + ++L+  +   +P     + PV +   L++ +   +P ILIG SGQ   FT+EVV+ M     +PIIF LSNPTS+ E T  +   W+ G+A+ A+GSPF P EY    +V  Q
Sbjct:  220 GEEYAEFVDAFIQAVKRRWPD-ILLQFEDFAQNNAMPLLNRYKNELCCFNDDIQGTAAVTLGSLIAACKASGAKLSEKRVAFLGAGSAGCGIAEQIVAQM-KAEGLTDAQARGRVFMVDRFGLITDKIPNQLDFQRRLSQPVGRIADWPVGDNISLLEVMEHGRPDILIGVSGQPGLFTEEVVKTMHKHCTRPIIFPLSNPTSRVEATPADLIRWTDGQALVATGSPFAPVEYKGKRYVIAQ 459          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHESW (NAD-dependent malic enzyme OS=Shewanella sp. (strain W3-18-1) GN=sfcA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.611e-41
Identity = 97/232 (41.81%), Postives = 141/232 (60.78%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKE---------LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDP 673
            G+EYAE +  FM AV   + +  LIQFEDF   NA  +LE+Y   +  FNDDIQGTA+V +  L++A K  G  L  QR  FLGAG AG GIAE I  ++  +  +  E+ R ++ +VD  GL++ + + +L  F++  A +   ++          L+D VN  KPT+LIG SG    FT+E++ AM S   +PIIF +SNPTS+ E T ++   W+ G+A+ A+GSPF+P
Sbjct:  217 GEEYAEFIEAFMQAVHVRWPDT-LIQFEDFAQKNAMPILERYKDRYCCFNDDIQGTAAVAVGCLLAACKAAGTELNQQRIAFLGAGSAGCGIAEAIVAQMVSE-GISDEQARTQVCMVDRWGLLLDN-MPNLLPFQQKLAQKCANIQNWNNFSDNISLLDVVNNAKPTVLIGVSGVPGLFTEEIIRAMHSHCARPIIFPMSNPTSRVEATPKDILHWTSGQALVATGSPFEP 445          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHEPC (NAD-dependent malic enzyme OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=sfcA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.611e-41
Identity = 97/232 (41.81%), Postives = 141/232 (60.78%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKE---------LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDP 673
            G+EYAE +  FM AV   + +  LIQFEDF   NA  +LE+Y   +  FNDDIQGTA+V +  L++A K  G  L  QR  FLGAG AG GIAE I  ++  +  +  E+ R ++ +VD  GL++ + + +L  F++  A +   ++          L+D VN  KPT+LIG SG    FT+E++ AM S   +PIIF +SNPTS+ E T ++   W+ G+A+ A+GSPF+P
Sbjct:  217 GEEYAEFIEAFMQAVHVRWPDT-LIQFEDFAQKNAMPILERYKDRYCCFNDDIQGTAAVAVGCLLAACKAAGTELNQQRIAFLGAGSAGCGIAEAIVAQMVSE-GISDEQARTQVCMVDRWGLLLDN-MPNLLPFQQKLAQKCANIQNWNNFSDNISLLDVVNNAKPTVLIGVSGVPGLFTEEIIRAMHSHCARPIIFPMSNPTSRVEATPKDILHWTSGQALVATGSPFEP 445          
BLAST of FC929855 vs. ExPASy Swiss-Prot
Match: MAO1_SHELP (NAD-dependent malic enzyme OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=sfcA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.748e-41
Identity = 96/233 (41.20%), Postives = 145/233 (62.23%), Query Frame = 2
Query:    5 GQEYAELLHEFMTAVKQNYGERILIQFEDFVNHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK----------KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDP 673
            G+EYAE +  FM AV + + +  LIQFEDF   NA  LLE+Y   +  FNDDIQGTA+V +  L++A +     L+ QR  FLGAG AG GIAE I  ++  +  +  E+ R+++++VD  GL+    + +L  F+          + W  E E +  L+D ++  KPT+LIG SG    F++E+++AM +  E+PIIF LSNPTS+ E T ++   W++G+A+ A+GSPF+P
Sbjct:  217 GEEYAEFVEAFMEAVHRRWPDA-LIQFEDFAQKNAMPLLERYKDRYCCFNDDIQGTAAVTVGSLLAACQAADSKLSQQRIAFLGAGSAGCGIAEAIIAQMVSE-GISDEQARQQVFMVDRWGLL-QDNMPNLLPFQQNLAQQVAKVEGWNTESENI-SLLDVMHNGKPTVLIGVSGAPGLFSEEIIKAMHTHCERPIIFPLSNPTSRVEATPKDILHWTKGQALVATGSPFEP 445          
The following BLAST results are available for this feature:
BLAST of FC929855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
MAO1_SHEB54.239e-4242.24NAD-dependent malic enzyme OS=Shewanella baltica (... [more]
MAO1_SHEB24.239e-4242.24NAD-dependent malic enzyme OS=Shewanella baltica (... [more]
MAO1_PSYA25.537e-4241.84NAD-dependent malic enzyme OS=Psychrobacter arctic... [more]
MAO1_PECCP7.231e-4242.02NAD-dependent malic enzyme OS=Pectobacterium carot... [more]
MAO1_AERHH9.444e-4242.15NAD-dependent malic enzyme OS=Aeromonas hydrophila... [more]
MAO1_SALAR1.233e-4140.08NAD-dependent malic enzyme OS=Salmonella arizonae ... [more]
MAO1_AERS41.233e-4142.15NAD-dependent malic enzyme OS=Aeromonas salmonicid... [more]
MAO1_SHESW1.611e-4141.81NAD-dependent malic enzyme OS=Shewanella sp. (stra... [more]
MAO1_SHEPC1.611e-4141.81NAD-dependent malic enzyme OS=Shewanella putrefaci... [more]
MAO1_SHELP2.748e-4141.20NAD-dependent malic enzyme OS=Shewanella loihica (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34001B07EF PostHarvC1 Citrus clementina cDNA clone C34001B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929855 ID=FC929855; Name=FC929855; organism=Citrus clementina; type=EST; length=712bp
TATTGGTCAGGAATATGCTGAACTGCTACATGAATTCATGACAGCTGTGA
AGCAGAATTATGGGGAGAGAATTCTCATTCAGTTTGAAGACTTTGTAAAC
CACAATGCCTTTGATCTGCTTGAAAAATATGGCACTACTCATCTTGTTTT
CAATGATGATATTCAGGGGACAGCATCTGTGGTCCTTGCAGGTCTTATTT
CAGCGATGAAATTTCTTGGAGGAAGCTTAGCCGACCAAAGATTTTTATTC
CTTGGTGCAGGAGAAGCTGGCACTGGAATAGCAGAACTCATAGCTCTTGA
GATATCCAAACAGACAAATATGCCGCTAGAAGAGACTCGCAAGAAGATTT
GGCTTGTGGATTCAAAGGGATTGATCGTCAGTTCCCGTTTAGAATCTCTC
CAACATTTCAAAAAGCCGTGGGCTCATGAACATGAACCTGTTAAGGAACT
AGTAGATGCCGTTAATGCAATCAAGCCAACAATTCTGATTGGAACATCAG
GACAAGGTCGAACATTTACTAAAGAAGTTGTTGAGGCTATGGCCTCCTTG
AATGAGAAACCCATTATTTTTTCTCTTTCCAACCCAACTTCACAGTCTGA
ATGCACCGCAGAAGAAGCCTATACGTGGAGCCAGGGCCGAGCCATTTTTG
CAAGTGGGAGCCCCTTTGACCCTTTCGAATATGGGGACAATGTTTTTGTG
CCTGGCCAGGCA
back to top