FC929856

Overview
NameFC929856
Unique NameFC929856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7570 contig Ccv1_Contig7570:9..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.819e-43
Identity = 86/206 (41.75%), Postives = 113/206 (54.85%), Query Frame = 3
Query:   72 GWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKE 689
            GWAA+D SG+LSP+ +  R TG +DV  KVLYCGICH+D+H +KN+ G S YP+                   F              CR+C  C   +E YC K+I +Y   Y DG  T GG+++ MV D+ F+V+IPD + L+ AAPLLCAG+T +SPL +FGL +                    AKAMG   TVIS+S KKE
Sbjct:   13 GWAARDSSGVLSPFNFYRRETGEKDVTFKVLYCGICHSDLHMVKNEWGFSTYPLVPGHEIVGEVTEVGSKVQKFKVGDRVGVGCIVGSCRSCENCTDHLENYCPKQILTYGAKYYDGSTTYGGYSDIMVADEHFIVRIPDNLPLDGAAPLLCAGITTYSPLRYFGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPKKE 218          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.574e-41
Identity = 87/206 (42.23%), Postives = 109/206 (52.91%), Query Frame = 3
Query:   72 GWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKE 689
            GWAA+D SG LSP  ++ R TG +DV  KVLYCGICH+D+H IKN+ G + YP                   NF              CR+C  CE  +E YC K I +Y   Y DG  T GG+++ MVV++ F V+IPD MAL+  APLLCAGVTV+SPL HF L +                     KA G   TVIS+S  K+
Sbjct:   16 GWAARDTSGTLSPLKFSRRATGEQDVTFKVLYCGICHSDLHYIKNEWGNAVYPAIPGHEIVGVVTEVGNKVQNFKVGDKVGVGCMVGSCRSCESCENHLENYCPKMILTYGSTYYDGTLTYGGYSDIMVVEEHFAVRIPDNMALDATAPLLCAGVTVYSPLKHFELDKPGLHIGVVGLGGLGHMAVKFGKAFGAKVTVISTSPNKK 221          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.026e-40
Identity = 82/210 (39.05%), Postives = 115/210 (54.76%), Query Frame = 3
Query:   57 ERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            ++   G AAKD SG+LSP+++T R TG +DV  KVL+CGICH+D+H +KN+ GMS YP+                 + F              C +C  C   +E YC K I +Y   Y D   T GG+++ MV ++ FV++IPD + L+ AAPLLCAG+TV+SP+ + GL +                    AKAMG   TVIS+S+KK
Sbjct:    6 QKEAFGLAAKDNSGVLSPFSFTRRETGEKDVRFKVLFCGICHSDLHMVKNEWGMSTYPLVPGHEIVGVVTEVGAKVTKFKTGEKVGVGCLVSSCGSCDSCTEGMENYCPKSIQTYGFPYYDNTITYGGYSDHMVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVVGLGGLGHVGVKFAKAMGTKVTVISTSEKK 215          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.026e-40
Identity = 81/215 (37.67%), Postives = 117/215 (54.42%), Query Frame = 3
Query:   48 LDTERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGL-KQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKE 689
            +D  RA  GWAA D SG+LSP+ ++ R  G  DV +K+L+CG+CH+D+H IKN  G S YP+                 + F              C++C  C  D+E YC K +++YN   +DG   QGG+++ +VVD +FV+ IPDG+  +  APLLCAG+TV+SP+ ++G+ K+S                    KA G   TVIS S +KE
Sbjct:    2 VDQNRA-FGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKE 215          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.741e-40
Identity = 79/206 (38.35%), Postives = 113/206 (54.85%), Query Frame = 3
Query:   72 GWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKE 689
            GWAAKD SG LSP+ +T R   A+DV +K+LYCG+CH+D+H +KND G + YP+                 + F              C+ C  C+ D+E YC K +++YN  Y  G  TQGG+++ +VV Q+FV++ PD + L+  APLLCAG+TV+SP+ ++G+ +                     KA G   TVISSS  KE
Sbjct:    8 GWAAKDASGHLSPFHFTRRQNEADDVTLKILYCGVCHSDLHTVKNDWGFTTYPVVPGHEIAGIVTKVGSNVTKFKEGDRVGVGVIVDSCQECECCQQDLESYCPKPVFTYNSPY-KGTRTQGGYSDFVVVHQRFVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISSSPNKE 212          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.150e-39
Identity = 74/205 (36.10%), Postives = 114/205 (55.61%), Query Frame = 3
Query:   72 GWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            GW A+D SG+LSP+ ++ R+ G  DV +K+L+CG+CHTD+H IKND G S YP+                 + F              C++C  C+ D+E YC +  ++YN + +DG    GG++E++VVDQ+FV++ P+ +  +  APLLCAG+TV+SP+ ++G+ ++                    KA G   TVISSS  K
Sbjct:   15 GWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKNDWGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSTK 219          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.453e-39
Identity = 76/206 (36.89%), Postives = 111/206 (53.88%), Query Frame = 3
Query:   72 GWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKE 689
            GWAA+D SG LSP+ ++ R  G +DV +K+LYCG+CH+D+H +KND G + YP+                   F              C+ C  C  D+EQYC K +++YN  Y  G  T GG+++ +VV Q++VV+ PD + L+  APLLCAG+TV+SP+ ++G+ +                     KA G   TVIS+S  KE
Sbjct:   15 GWAARDTSGTLSPFHFSRRENGDDDVSVKILYCGVCHSDLHTLKNDWGFTTYPVVPGHEIVGVVTKVGINVKKFRVGDNVGVGVIVESCQTCENCNQDLEQYCPKPVFTYNSPY-KGTRTYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISTSPNKE 219          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.734e-39
Identity = 78/213 (36.62%), Postives = 114/213 (53.52%), Query Frame = 3
Query:   57 ERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDG-KPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGL-KQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKE 689
            +    GWAA D SG+LSP+ ++ R  G  DV +K+L+CG+CH+D+H IKN  G S YP+                 + F              C++C  C  D+E YC K +++YN   +DG    QGG+++ +VVD +FV+ IPDG+  +  APLLCAG+TV+SP+ ++G+ K+S                    KA G   TVIS S +KE
Sbjct:    4 QNKAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTSRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKE 216          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.660e-38
Identity = 81/215 (37.67%), Postives = 111/215 (51.63%), Query Frame = 3
Query:   42 GSLDTERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            G  +      GWAA+D SG LSP+ ++ R TG E+V +KVLYCGICH+D+H +KN+   S YP+                 S F              CR C  C  D E YC K I +YN V+ DG    GG+++ +VVD+++ VKIP  + L  AAPLLCAG++++SP+ +FGL                      AKA G   TV+SS+  K
Sbjct:    6 GEKEQSVEAFGWAARDSSGHLSPFVFSRRKTGEEEVRVKVLYCGICHSDLHCLKNEWHSSIYPLVPGHEIIGEVSEIGNKVSKFNLGDKVGVGCIVDSCRTCESCREDQENYCTKAIATYNGVHHDGTINYGGYSDHIVVDERYAVKIPHTLPLVSAAPLLCAGISMYSPMKYFGLTGPDKHVGIVGLGGLGHIGVRFAKAFGTKVTVVSSTTGK 220          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.131e-37
Identity = 84/220 (38.18%), Postives = 115/220 (52.27%), Query Frame = 3
Query:   36 KMGSLDTERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTD---GKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            + G  +  +A +GWAA+D SG+LSPY ++ R    +DV IKVLYCGICHTD+H +KND G + YP+                 + F              CR C  C    E YC K + + N V  D   G  TQGGF++++VV++ +V+++P G+ L+ AAPLLCAGVTV+SP+   GL                      AKA G   TVIS+S  K
Sbjct:   73 EQGMEEHGKAAVGWAARDDSGVLSPYNFSRRAQKDDDVTIKVLYCGICHTDLHIVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVASCRGCECCGNGYENYCAKMVTTCNGVDHDHGGGAATQGGFSDAIVVNEHYVLRVPAGLPLDSAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGGLGHVAVKFAKAFGMRVTVISTSPGK 292          
The following BLAST results are available for this feature:
BLAST of FC929856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
MTDH_FRAAN3.819e-4341.75Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
MTDH_MESCR3.574e-4142.23Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
CADH8_ARATH3.026e-4039.05Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
CADH3_ARATH3.026e-4037.67Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
MTDH1_STYHU6.741e-4038.35Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
CADH9_ARATH1.150e-3936.10Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
MTDH_MEDSA7.453e-3936.89Probable mannitol dehydrogenase OS=Medicago sativa... [more]
CADH2_ARATH9.734e-3936.62Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
CADH6_ARATH1.660e-3837.67Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
CAD8C_ORYSJ3.131e-3738.18Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC34001B08EF PostHarvC1 Citrus clementina cDNA clone C34001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929856 ID=FC929856; Name=FC929856; organism=Citrus clementina; type=EST; length=707bp
CACATAACTCAGACGCTAAAACGAAAAAGTCACAAAAAATGGGAAGCCTT
GATACCGAGAGAGCAACGATAGGGTGGGCTGCAAAGGATCCATCTGGGAT
TCTGTCACCTTACACTTACACTCTCAGAAACACAGGAGCAGAAGATGTTT
ACATTAAGGTTCTTTACTGTGGAATCTGCCACACTGATATTCATCAAATA
AAAAATGATCTGGGCATGTCTAACTATCCAATGGTTCCAGGACATGAGGT
GGTGGGTGAAGTGAAGGAAGTGGGTTCAGAAGTGAGCAACTTTAAAGTAG
GAGACAAGGTTGGTGTTGGGGTTCTCGTTGGTTGTTGCAGAAACTGCAGG
CCGTGCGAGGCAGATGTTGAGCAGTACTGCAACAAGAAAATCTGGTCCTA
TAACGATGTTTACACCGATGGCAAGCCTACACAAGGCGGCTTTGCTGAGT
CCATGGTCGTTGATCAAAAGTTTGTGGTGAAAATACCAGATGGAATGGCA
CTGGAGCAGGCGGCACCGCTATTGTGTGCTGGTGTGACAGTGTTCAGTCC
CCTGAGCCACTTTGGATTGAAGCAGAGCGGGCTGAGAGGAGGAATCTTGG
GGCTCGGAGGAGTAGGCCACATGGGGGTTTTGATAGCTAAGGCGATGGGA
CACCATGNTACTGTGATTAGCTCTTCTGATAAGAAAGAGTGGAAGCTATG
GAGCATC
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