FC929856

Overview
NameFC929856
Unique NameFC929856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7570 contig Ccv1_Contig7570:9..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.090e-37
Identity = 76/208 (36.54%), Postives = 108/208 (51.92%), Query Frame = 3
Query:   69 IGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSS-DKKE 689
            +GWAA D SG  SP+ ++ R TG  DV  +VLYCG+CH+D+H +KN+ G+++YP+                                  CR C  C  D+E YC K+I +Y   Y DG   +GG+++ MV D+ F+++ P+   L+  APLLCAG+T +SPL +FGL +                    AKA G   TVIS+S  KKE
Sbjct:   14 LGWAATDNSGTFSPFNFSRRATGERDVQFRVLYCGVCHSDLHMVKNEWGVTHYPIVPGHEIVGIVTEVGSKVEKVKIGDKVGVGVLVGSCRQCDQCSNDLENYCYKQILTYGAPYLDGTIARGGYSDIMVADEHFIIRWPENFPLDAGAPLLCAGITTYSPLKYFGLDKPGLRVGVNGLGGLGHVAVKFAKAFGTKVTVISTSLSKKE 221          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.554e-36
Identity = 81/217 (37.33%), Postives = 112/217 (51.61%), Query Frame = 3
Query:   36 KMGSLDTERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            + G  +  +A +GWAA+D SG+LSPY ++ R    +DV IKVLYCGICHTD+H +KND G + YP+                 + F              CR C  C    E YC   + + N     G  TQGGF++++VV++ +V+++P G+ L+ AAPLLCAGVTV+SP+   GL                      AKA G   TVIS+S  K
Sbjct:   73 EQGMEEHGKAAVGWAARDDSGVLSPYNFSRRAQKDDDVTIKVLYCGICHTDLHVVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGFFVGSCRTCDSCGKGYENYCPTMVITSNGKDYGGAATQGGFSDAIVVNEHYVLRVPAGLPLDGAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGGLGHVAVKFAKAFGMRVTVISTSPGK 289          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.713e-36
Identity = 79/210 (37.62%), Postives = 109/210 (51.90%), Query Frame = 3
Query:   57 ERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            E+   G AAKD SGILSP++++ R TG +DV  KVL+CGICHTD+   KN+ G++ YP+                   F              CR+C  C    E YC K I +      D   T GG+++ MV  + F+++IPD + L+ AAPLLCAGVTV+SP+ + GL +                    AKAMG   TVIS+S++K
Sbjct:    6 EKEAFGLAAKDESGILSPFSFSRRATGEKDVRFKVLFCGICHTDLSMAKNEWGLTTYPLVPGHEIVGVVTEVGAKVKKFNAGDKVGVGYMAGSCRSCDSCNDGDENYCPKMILTSGAKNFDDTMTHGGYSDHMVCAEDFIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDKPGMHIGVVGLGGLGHVAVKFAKAMGTKVTVISTSERK 215          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.316e-35
Identity = 79/208 (37.98%), Postives = 108/208 (51.92%), Query Frame = 3
Query:   63 ATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            A  G AA+D SG LSP T + R+TG +DV IK+LYCGICH+D+H IKN+   + YP+                 + F              C +C  C   +E +C   I++YN V  DG  T GG++  +VV ++FVV+ P+ M L++ APLLCAG+TV+SP+ + GL                      AKA G   TVISSS  K
Sbjct:    5 AAAGLAARDASGHLSPLTISRRSTGDDDVVIKILYCGICHSDLHSIKNEWKNATYPLVPGHEIAGVVTEAGKNVTKFKGGDKVGVGCMVNSCHSCDSCNQGLENHCPGVIFTYNSVDKDGTVTYGGYSSMVVVHERFVVRFPEAMPLDKGAPLLCAGITVYSPMKYHGLNVPSKHVGVLGLGGLGHVAVKFAKAFGMTVTVISSSPGK 212          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.931e-35
Identity = 77/209 (36.84%), Postives = 106/209 (50.72%), Query Frame = 3
Query:   72 GWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQ---SXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKE 689
            GWAA D SG + P+ +  R  G +DV IKV YCG+CHTD+H I ND G++ YP+                 + F              C +C  C    E YC+K   +YN ++ DG  T GG++  +V  ++FVV+IPD + L+ AAPLLCAG+TV+SP+   G+ Q   +                    KA G H TVIS+S  KE
Sbjct:   13 GWAAMDESGKIVPFVFKRRENGVDDVTIKVKYCGMCHTDLHFIHNDWGITMYPVVPGHEITGVVTKVGTNVAGFKVGDRVGVGCIAASCLDCEHCRRSEENYCDKVALTYNGIFWDGSITYGGYSGMLVAHKRFVVRIPDTLPLDAAAPLLCAGITVYSPMKQHGMLQADAAGRRLGVVGLGGLGHVAVKFGKAFGLHVTVISTSPAKE 221          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.528e-35
Identity = 71/204 (34.80%), Postives = 108/204 (52.94%), Query Frame = 3
Query:   75 WAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            WAA+DPSGILSPY +  R   ++DV +++ +CG+C+ D+   +N L  S YP+                  +F              CR+C  C + +E YC++ ++++N V TDG  T+GG++  +VV +++  KIPDG  LE+AAPLLCAG+TV+SP+    + Q                     KA G   TVIS+S+ K
Sbjct:   13 WAARDPSGILSPYKFNRRAVQSDDVSLRITHCGVCYADVAWTRNILNNSMYPLVPGHEIAGVVTEVGADVKSFKVGDHVGVGTYVNSCRDCENCNSSLENYCSQHVFTFNGVDTDGTVTKGGYSTHIVVHERYCFKIPDGYPLEKAAPLLCAGITVYSPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVTVISTSESK 216          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.114e-34
Identity = 71/217 (32.72%), Postives = 108/217 (49.77%), Query Frame = 3
Query:   36 KMGSLDTERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            K   ++      GWAA+D +G+LSP+ ++ R TG +DV +KVL+CG+CH+D H I N+ G + YP+                                  CR+C  C  + E +C   I +Y  +Y DG  T GG++++MV D+ F+++ P  + L+  APLLCAG+T +SPL ++GL +                    AKA G   TVI  S+ K
Sbjct:    3 KSSEIEHPVKAFGWAARDTTGLLSPFKFSRRATGEKDVRLKVLFCGVCHSDHHMIHNNWGFTTYPIVPGHEIVGVVTEVGSKVEKVKVGDNVGIGCLVGSCRSCESCCDNRESHCENTIDTYGSIYFDGTMTHGGYSDTMVADEHFILRWPKNLPLDSGAPLLCAGITTYSPLKYYGLDKPGTKIGVVGLGGLGHVAVKMAKAFGAQVTVIDISESK 219          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.114e-34
Identity = 76/211 (36.02%), Postives = 110/211 (52.13%), Query Frame = 3
Query:   57 ERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKE 689
            E+  +G AA+D SG LSP+  + R+TG +DV IK+L+CGICH+D+H IKN+   S YP+                 + F              CR+C  C    E +C + +++YN V  DG  T GG++  +VV ++FVV  P+ M L+  APLLCAG+TV++P+ + GL                      A+A G   TVISSS  K+
Sbjct:   13 EQQAVGLAARDSSGHLSPFAISRRSTGDDDVAIKILFCGICHSDLHCIKNEWKHSIYPLVPGHEIAGVVTEVGKNVTRFKAGDRVGVGCMVNSCRSCESCNNGFENHCPEGVFTYNSVDKDGTVTYGGYSSMVVVHERFVVMFPEAMPLDVGAPLLCAGITVYTPMKYHGLNAPGKHVGVLGLGGLGHVAVKFARAFGLKVTVISSSPGKK 223          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.455e-34
Identity = 73/197 (37.06%), Postives = 102/197 (51.78%), Query Frame = 3
Query:   99 ILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKE 689
            ILSP+ ++ R TG  DV  KVLYCG+CH+D+H +KN+ GM+ YP+                   F              C +C  C+ D E  C K++ +Y     DG  T GG+A+SMV DQ FV++ P+ + L+  APLLCAG+T +SPL + GL +                    AKA G H TVIS+S+ K+
Sbjct:    1 ILSPFKFSRRATGDNDVRFKVLYCGVCHSDLHMVKNEWGMTTYPIVPGHEIVGRVTEVGSKVEKFKVGDAVGVGCLVGSCLSCENCDDDSENNCAKQVQTYAFTNVDGSITYGGYADSMVADQHFVLRWPENLPLDSGAPLLCAGITTYSPLRYHGLDKPGTKVGVVGLGGLGHVAVKMAKAFGAHVTVISTSESKK 197          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.455e-34
Identity = 81/208 (38.94%), Postives = 104/208 (50.00%), Query Frame = 3
Query:   63 ATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            A +GWAA+D SG LSP+++T R    +DV IKVLYCGICHTD+H IKN+ G + YP+                 + F              CR C  C    E YC   + + N     G  TQGGF++ MVV Q +VV++P  +  + AAPLLCAGVTV+SP+  +GL                       KA G   TVISSS  K
Sbjct:    7 AALGWAARDTSGHLSPFSFTRRVQQEDDVTIKVLYCGICHTDLHIIKNEWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVDSCRACDSCGKGYENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVVRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNGPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAK 214          
The following BLAST results are available for this feature:
BLAST of FC929856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
GEDH1_OCIBA4.090e-3736.54Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
CAD8B_ORYSJ1.554e-3637.33Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
CADH7_ARATH7.713e-3637.62Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
CADH5_ORYSJ1.316e-3537.98Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH6_ORYSJ2.931e-3536.84Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
CADH1_ORYSJ8.528e-3534.80Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
MTDH_APIGR1.114e-3432.72Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
CADH3_ORYSJ1.114e-3436.02Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
MTDH_PETCR1.455e-3437.06Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
CAD8D_ORYSJ1.455e-3438.94Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC34001B08EF PostHarvC1 Citrus clementina cDNA clone C34001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929856 ID=FC929856; Name=FC929856; organism=Citrus clementina; type=EST; length=707bp
CACATAACTCAGACGCTAAAACGAAAAAGTCACAAAAAATGGGAAGCCTT
GATACCGAGAGAGCAACGATAGGGTGGGCTGCAAAGGATCCATCTGGGAT
TCTGTCACCTTACACTTACACTCTCAGAAACACAGGAGCAGAAGATGTTT
ACATTAAGGTTCTTTACTGTGGAATCTGCCACACTGATATTCATCAAATA
AAAAATGATCTGGGCATGTCTAACTATCCAATGGTTCCAGGACATGAGGT
GGTGGGTGAAGTGAAGGAAGTGGGTTCAGAAGTGAGCAACTTTAAAGTAG
GAGACAAGGTTGGTGTTGGGGTTCTCGTTGGTTGTTGCAGAAACTGCAGG
CCGTGCGAGGCAGATGTTGAGCAGTACTGCAACAAGAAAATCTGGTCCTA
TAACGATGTTTACACCGATGGCAAGCCTACACAAGGCGGCTTTGCTGAGT
CCATGGTCGTTGATCAAAAGTTTGTGGTGAAAATACCAGATGGAATGGCA
CTGGAGCAGGCGGCACCGCTATTGTGTGCTGGTGTGACAGTGTTCAGTCC
CCTGAGCCACTTTGGATTGAAGCAGAGCGGGCTGAGAGGAGGAATCTTGG
GGCTCGGAGGAGTAGGCCACATGGGGGTTTTGATAGCTAAGGCGATGGGA
CACCATGNTACTGTGATTAGCTCTTCTGATAAGAAAGAGTGGAAGCTATG
GAGCATC
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