FC929856

Overview
NameFC929856
Unique NameFC929856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7570 contig Ccv1_Contig7570:9..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.481e-34
Identity = 80/208 (38.46%), Postives = 104/208 (50.00%), Query Frame = 3
Query:   63 ATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            A +GWAA+D SG LSP+++T R    +DV IKVLYCGICHTD+H IKN+ G + YP+                 + F              CR C  C    E YC   + + N     G  TQGGF++ MVV Q +V+++P  +  + AAPLLCAGVTV+SP+  +GL                       KA G   TVISSS  K
Sbjct:    7 AALGWAARDASGHLSPFSFTRRVQEEDDVTIKVLYCGICHTDLHTIKNEWGNAMYPVVPGHEIVGVVAGVGAGVTRFKAGDTVGVGYFVDSCRACDSCGKGDENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVLRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNAPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAK 214          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.231e-33
Identity = 78/212 (36.79%), Postives = 105/212 (49.53%), Query Frame = 3
Query:   72 GWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDG------MALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKE 689
            GWAA+D +G+LSP++Y LR  G EDV +K+L+CGICH+D+  IKN+ G + YP+                 + F              CR C  C    E YC   + S+N    DG    GGF+E  VV+Q++VV+IP G        L++ APLLCAGVTV+ P+   GL +                     KA G   TVIS+S  KE
Sbjct:   10 GWAARDANGLLSPFSYPLRAKGDEDVVVKILFCGICHSDLSTIKNEWGNAKYPVVPGHEIVGVVAEVGSSVARFAAGDTVGVGYIASTCRACANCRDGFENYCAGLVPSFNAALPDGATVHGGFSELAVVNQRYVVRIPGGGGGASPAPLDRLAPLLCAGVTVYCPMRRLGLDRPGVHLGVAGLGGLGHLAVKFGKAFGVKVTVISTSPWKE 221          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.982e-33
Identity = 79/213 (37.09%), Postives = 109/213 (51.17%), Query Frame = 3
Query:   60 RATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQ-AAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSS--DKKE 689
            R   GWAA+D SG+LSP+ ++ R+ G EDV ++VLYCGICHTD+H  KND G S YP                    +              CR+C+ C  ++E YC K I +  D + DG  T GG+++SMVVD+ FV +IP+G+ L+   +  LC G +  SPL ++GL +                    AK  G   TVIS+S   KKE
Sbjct:   12 RKAFGWAARDSSGLLSPFNFSRRDIGEEDVALEVLYCGICHTDLHMAKNDFGNSIYPYVPGHEVIGIVAEVGSKVEKYKVGDKVGVGYFVESCRSCQNCIDNLENYCPKHILTQGDKHIDGTTTYGGYSDSMVVDEHFVTRIPEGLPLDGCGSSSLCWGYS-HSPLKYYGLDKPGLHVGVVGLGGLGHMVAKFAKTHGLKITVISTSPPTKKE 223          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.839e-30
Identity = 76/218 (34.86%), Postives = 106/218 (48.62%), Query Frame = 3
Query:   60 RATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCN-KKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPD--------GMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            R  +G AA D SG L+P   + R TG +DV IKVLYCGICH+D+H IKN+   + YP+                 + F              C  C  C    E YC+   +++YN V  DG  T GG+++++VV Q+FVV+ P          + L+  APLLCAGVTV++P+   GL ++                   A+A G   TVIS+S  K
Sbjct:   21 RKAVGLAAHDDSGHLTPIRISRRKTGDDDVAIKVLYCGICHSDLHTIKNEWRNAVYPVVAGHEITGVVTEVGKNVARFKAGDEVGVGCMVNTCGGCESCRDGCENYCSGGVVFTYNSVDRDGTRTYGGYSDAVVVSQRFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYAPMRQHGLCEAGKHVGVVGLGGLGHVAVKFARAFGMRVTVISTSPVK 238          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.708e-30
Identity = 65/204 (31.86%), Postives = 101/204 (49.51%), Query Frame = 3
Query:   75 WAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            WAA+DPSGILSPY +  R   +EDV +++ +CG+C+ D+   +N    S YP+                   F              C++C  C + +E +C+K + +YN V +DG  T+GG++  ++V Q++  KIP    L +AAPLLCAG+TV++P+    + Q                     KA G   TV S+S+ K
Sbjct:   13 WAARDPSGILSPYKFNRREVQSEDVSLRITHCGVCYADVIWTRNMFNDSIYPLVPGHEIAGVVTEVGADVKGFKVGDHVGVGVYVNSCQDCENCNSSLENHCSKCVVTYNSVDSDGTVTKGGYSSHILVHQRYCFKIPADYPLSKAAPLLCAGITVYTPMIRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVTVFSTSESK 216          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.840e-29
Identity = 71/205 (34.63%), Postives = 104/205 (50.73%), Query Frame = 3
Query:   75 WAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKI-WSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            +AA   +  L+  T T R+ G  DV I + + GICH+DIH +K + G  NYP+                 + +              CR C  C   +EQYC     ++YN +  DG+PTQGG++E++VVD+ +V++IPD + L+ AAPLLCAG+T++SPL H+    +                   A AMG   TV+S S KK
Sbjct:    7 YAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLYSPLRHWNAGANTRVAIIGLGGLGHMGVKLGA-AMGADVTVLSQSLKK 210          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.840e-29
Identity = 71/205 (34.63%), Postives = 104/205 (50.73%), Query Frame = 3
Query:   75 WAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKI-WSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKK 686
            +AA   +  L+  T T R+ G  DV I + + GICH+DIH +K + G  NYP+                 + +              CR C  C   +EQYC     ++YN +  DG+PTQGG++E++VVD+ +V++IPD + L+ AAPLLCAG+T++SPL H+    +                   A AMG   TV+S S KK
Sbjct:    7 YAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLYSPLRHWNAGANTRVAIIGLGGLGHMGVKLGA-AMGADVTVLSQSLKK 210          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: CADH1_ARATH (Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 67/215 (31.16%), Postives = 100/215 (46.51%), Query Frame = 3
Query:   45 SLDTERATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVISSSDKKE 689
            S   E   + WAA+DPSG+LSP+T T R+   +DV + + +CG+C+ D+   +N  G S YP+                   F              CR C  C    E  C K ++++N +  DG  T+GG++  +VV +++  KIP    LE AAPLLCAG+TV++P+    + Q                     KA G   TV S+S  K+
Sbjct:    4 SESVENECMCWAARDPSGLLSPHTITRRSVTTDDVSLTITHCGVCYADVIWSRNQHGDSKYPLVPGHEIAGIVTKVGPNVQRFKVGDHVGVGTYVNSCRECEYCNEGQEVNCAKGVFTFNGIDHDGSVTKGGYSSHIVVHERYCYKIPVDYPLESAAPLLCAGITVYAPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKK 218          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: ADHA_BACSU (Probable formaldehyde dehydrogenase adhA OS=Bacillus subtilis GN=adhA PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 62/194 (31.96%), Postives = 88/194 (45.36%), Query Frame = 3
Query:  114 TYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKI-WSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHXTVIS-SSDKKE 689
            T   R     DV I + + GICH+DIH   ++ G   +PM                 +                C  C  C    EQ+C K +  +YN V  DG PT GG+++ +VV  +FVV+IPD + ++ A+PLLCAG+T +SPL H+ +                      A AMG   TV+S S +KKE
Sbjct:   23 TIERRGLRPHDVLIDIKFSGICHSDIHSAFDEWGGGIFPMVPGHEIAGVVTAVGTKVTKLAVGDRVGVGCFVDSCGECEYCLNAEEQFCTKGVVQTYNSVDYDGNPTYGGYSQKIVVTDRFVVRIPDRLEMDVASPLLCAGITTYSPLKHWNVGPG-KKVAIVGVGGLGHLAIQFAHAMGAEVTVLSRSMNKKE 215          
BLAST of FC929856 vs. ExPASy Swiss-Prot
Match: YAHK_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yahK OS=Escherichia coli (strain K12) GN=yahK PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 52/170 (30.59%), Postives = 83/170 (48.82%), Query Frame = 3
Query:   60 RATIGWAAKDPSGILSPYTYTLRNTGAEDVYIKVLYCGICHTDIHQIKNDLGMSNYPMXXXXXXXXXXXXXXXXXSNFXXXXXXXXXXXXXCCRNCRPCEADVEQYCNKKIWSYNDVYTDGK-PTQGGFAESMVVDQKFVVKIPDGM-ALEQAAPLLCAGVTVFSPLSHF 563
            +A   ++AK P   L P   T R  G  DV I++ YCG+CH+D+HQ++++   + YP                    +              C++C  CE  +E YC+    +YN    D    T GG+++ +VV +++V++I      L   APLLCAG+T +SPL H+
Sbjct:    4 KAVGAYSAKQP---LEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHW 170          
The following BLAST results are available for this feature:
BLAST of FC929856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CAD8A_ORYSJ2.481e-3438.46Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]
CADH9_ORYSJ1.231e-3336.79Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
MTDH3_STYHU7.982e-3337.09Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]
CADH7_ORYSJ2.839e-3034.86Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CADH4_ORYSJ3.708e-3031.86Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]
ADHC_MYCTU1.840e-2934.63NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO1.840e-2934.63NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
CADH1_ARATH9.132e-2931.16Probable cinnamyl alcohol dehydrogenase 1 OS=Arabi... [more]
ADHA_BACSU9.153e-2131.96Probable formaldehyde dehydrogenase adhA OS=Bacill... [more]
YAHK_ECOLI5.933e-2030.59Uncharacterized zinc-type alcohol dehydrogenase-li... [more]

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Properties
Property NameValue
Genbank descriptionC34001B08EF PostHarvC1 Citrus clementina cDNA clone C34001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929856 ID=FC929856; Name=FC929856; organism=Citrus clementina; type=EST; length=707bp
CACATAACTCAGACGCTAAAACGAAAAAGTCACAAAAAATGGGAAGCCTT
GATACCGAGAGAGCAACGATAGGGTGGGCTGCAAAGGATCCATCTGGGAT
TCTGTCACCTTACACTTACACTCTCAGAAACACAGGAGCAGAAGATGTTT
ACATTAAGGTTCTTTACTGTGGAATCTGCCACACTGATATTCATCAAATA
AAAAATGATCTGGGCATGTCTAACTATCCAATGGTTCCAGGACATGAGGT
GGTGGGTGAAGTGAAGGAAGTGGGTTCAGAAGTGAGCAACTTTAAAGTAG
GAGACAAGGTTGGTGTTGGGGTTCTCGTTGGTTGTTGCAGAAACTGCAGG
CCGTGCGAGGCAGATGTTGAGCAGTACTGCAACAAGAAAATCTGGTCCTA
TAACGATGTTTACACCGATGGCAAGCCTACACAAGGCGGCTTTGCTGAGT
CCATGGTCGTTGATCAAAAGTTTGTGGTGAAAATACCAGATGGAATGGCA
CTGGAGCAGGCGGCACCGCTATTGTGTGCTGGTGTGACAGTGTTCAGTCC
CCTGAGCCACTTTGGATTGAAGCAGAGCGGGCTGAGAGGAGGAATCTTGG
GGCTCGGAGGAGTAGGCCACATGGGGGTTTTGATAGCTAAGGCGATGGGA
CACCATGNTACTGTGATTAGCTCTTCTGATAAGAAAGAGTGGAAGCTATG
GAGCATC
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