FC929885

Overview
NameFC929885
Unique NameFC929885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: RPN8_ASHGO (26S proteasome regulatory subunit RPN8 OS=Ashbya gossypii GN=RPN8 PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.531e-66
Identity = 126/235 (53.62%), Postives = 171/235 (72.77%), Query Frame = 2
Query:    2 EKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVP-NPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNL 703
            E+V V PLVLLS++D+Y R+     KR VGVLLG +   T+ V+NS+A+PFEED+K+P +WFLDHNY E+M  M K+INAKE ++GWY +GPKLR +DL I+ LF  Y   N +L+I+DV+ + +G+PT AY  +EEVK++ +  +++ FVH+P+ I A E EEIGVEHLLRDV+D     L+  +T +L +L+GL  +LR+I  YLD V   +LP NH IL  LQDVFNLLPNL
Sbjct:    6 EQVNVAPLVLLSVLDHYKRMNTPDNKRCVGVLLGDNSGSTIKVTNSFALPFEEDEKNPDVWFLDHNYIENMNDMCKKINAKEKMIGWYHSGPKLRSSDLKINGLFKKYTQGNSLLLIVDVKQQGVGLPTDAYMAIEEVKDDGS-STERTFVHLPTAIEAEEAEEIGVEHLLRDVRDQAAGNLSLRLTNQLKSLQGLQRKLRDIVAYLDKVNSGQLPANHIILGKLQDVFNLLPNL 239          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_ARATH (Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.756e-22
Identity = 69/234 (29.49%), Postives = 118/234 (50.43%), Query Frame = 2
Query:   14 VHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFK-GTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVH---VPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNL 703
            +HPLV+ ++ D + R   D+ +RV+G LLGS    GTVD+ NSYAVP  E      +   D +YH +M +   ++N+KE +VGWYSTG  +      IH  +   VPNP+ + +D          KA+     V  N +   +++  H   +P ++   + E +G + L    K T++  L N++ G    ++ L   + ++  Y+D V+  ++  ++ I   + D    LP L
Sbjct:   30 IHPLVIFNVCDCFVR-RPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAV---DIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAF-----VSSNLSLGDRQLVAHFQEIPVDLRMVDAERVGFDVL----KATSVDKLPNDLEGMELTMERLLTLINDVYKYVDSVVGGQIAPDNNIGRFIADAVASLPKL 250          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EI3F1_DROMO (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila mojavensis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20
Identity = 71/247 (28.74%), Postives = 127/247 (51.42%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV------KDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++NA E+VVGW++TG ++  +   IH+ +     NPV + +D   +   +  +AY  ++        K+  +F  +P E+ ++E E  G++ L + V      +  T++ + +       A K L + L  I  Y+D VI  K+  ++ +   L D+ + +P++   +  Q F
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNANENVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQSGRMGLRAYICIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTVTVSPAHRPKTVAPMLDLAQISEAATK-LQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMF 247          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EI3F1_DROWI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila willistoni GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.804e-20
Identity = 72/249 (28.92%), Postives = 128/249 (51.41%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV------KDTTISTLAN--EVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N+ E VVGW++TG ++  +   IH+ +     NPV V +D   +   +  +AY  ++        KS  +F  +P E+ ++E E  G++ L + V      +  T+  + +  +++   T L+ L   L  I  Y+D VI  K+  ++ +   L D+ + +P++   +  Q F
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYELNRKVNSNESVVGWWATGNEVTNHSSVIHEYYARECNNPVHVTVDTSLQGGRMGLRAYVCIQLGVPGG--KSGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAHRPKTVPPMLDLAQISEASTKLQSL---LDLILKYVDDVIAHKVTPDNAVGRQLLDLIHAVPHMTHEQFTQMF 247          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_ANOGA (Eukaryotic translation initiation factor 3 subunit F OS=Anopheles gambiae GN=eIF3-S5 PE=3 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.662e-20
Identity = 70/248 (28.23%), Postives = 124/248 (50.00%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV-------KDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V VHP+VL  IVD Y R   D+ +RV+G LLGS  KG V+V+N + +P +E          +  Y   +Y + +R+NA E++VGW++TG ++  +   IH+ +     NPV + +D       +  KAY  V         KS  +F  +  E+ ++E E +G++  ++ +       +  T+S +  ++     A   L A L ++  Y++ V+ EK    + +   L D+ + +PN+   +  Q F
Sbjct:   12 VRVHPVVLFQIVDAYERRNADS-ERVIGTLLGSVDKGVVEVTNCFCLPHKEHTDQVEA---ELGYASDLYELNQRVNASENIVGWWATGQEVTNHSSVIHEYYARECTNPVHLTLDTSLTGARMGIKAYVCVSLGVPGG--KSGCMFTPINVEVTSYEPEIVGLQLCMKTIGVQSNPSRPRTVSPML-DLAQVTDASDKLLALLSDVLAYVEDVLSEKQQPENTVGRALLDLIHSVPNMTGDQFAQMF 252          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EI3F1_DROVI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila virilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.783e-20
Identity = 71/249 (28.51%), Postives = 128/249 (51.41%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV------KDTTISTLAN--EVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++NA E VVGW++TG ++  +   IH+ +     NPV + +D   +   +  +AY  ++        K+  +F  +P E+ ++E E  G++ L + V      +  T+  + +  +++   T L+ L   L  I  Y+D VI  K+  ++ +   L D+ + +P++   +  Q F
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNANESVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAHRPKTVPPMLDLAQISEASTKLQSL---LELILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMF 247          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_AEDAE (Eukaryotic translation initiation factor 3 subunit F OS=Aedes aegypti GN=eIF3-S5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20
Identity = 71/253 (28.06%), Postives = 125/253 (49.41%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV-------KDTTISTLAN-----EVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V VHP+VL  IVD Y R   D+ +RV+G LLGS  KG V+V+N + VP +E          +  Y   +Y + +R+N  E++VGW++TG ++  +   IH+ +     NP+ + +D       +  KAY  V         K+  +F  +  EI+++E E +G++   + +       +  T+S + +     E + KL  L G      E+  Y++ V+ EK   ++ +   L D+ + +PN+   +  Q F
Sbjct:   12 VRVHPVVLFQIVDAYERRNADS-ERVIGTLLGSVDKGVVEVTNCFCVPHKEHADQVEA---ELGYASDLYDLNRRVNPSENIVGWWATGQEVTNHSSVIHEYYARECNNPIHLTLDTSLSAARMGIKAYVCVSLGVPGG--KTGCMFTPINVEISSYEPEVVGLQLCSKTIGVQQNASRPRTVSPMLDLAQITEASDKLLTLLG------EVLNYVEDVLAEKQQPDNSVGRALLDLIHSVPNMTSDQFAQMF 252          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_CULQU (Eukaryotic translation initiation factor 3 subunit F OS=Culex quinquefasciatus GN=eIF3-S5 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.159e-20
Identity = 71/253 (28.06%), Postives = 124/253 (49.01%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV-------KDTTISTL-----ANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V VHP+VL  IVD Y R   D+ +RV+G LLGS  KG V+V+N + VP +E          +  Y   +Y + +R+N  E++VGW++TG ++  +   IH+ +     NP+ + +D       +  KAY  V         K+  +F  +  E+ ++E E +G+    + +       +  T+S +      +E +GKL  L G      E+  Y++ V+ EK   ++ +   L D+ + +PN+   E  + F
Sbjct:   12 VRVHPVVLFQIVDAYERRNADS-ERVIGTLLGSVEKGIVEVTNCFCVPHKEHADQVEA---ELGYASDLYDLNRRVNPSENIVGWWATGQEVTNHSSVIHEYYARECNNPIHLTLDTSLTAARMGIKAYVCVSLGVPGG--KTGCMFTPINVEVTSYEPEVVGLSLCAKTIGVQSNPARPRTVSPMLDLAQVSEASGKLQTLLG------EVLNYVEDVLAEKQQPDNFVGRALLDLIHSVPNMKHEEFAKMF 252          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_PANTR (Eukaryotic translation initiation factor 3 subunit F OS=Pan troglodytes GN=EIF3F PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 65/239 (27.20%), Postives = 125/239 (52.30%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTG---KLTALKGLDARLRE----IRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNL 703
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++    T  S   N V G    L  + G  AR+++    +  Y + V+  K+  ++ +   L  + N +P +
Sbjct:   96 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK----TCFS--PNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKI 322          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_MACFA (Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 65/239 (27.20%), Postives = 125/239 (52.30%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTG---KLTALKGLDARLRE----IRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNL 703
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++    T  S   N V G    L  + G  AR+++    +  Y + V+  K+  ++ +   L  + N +P +
Sbjct:   96 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK----TCFS--PNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKI 322          
The following BLAST results are available for this feature:
BLAST of FC929885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RPN8_ASHGO7.531e-6653.6226S proteasome regulatory subunit RPN8 OS=Ashbya g... [more]
EIF3F_ARATH1.756e-2229.49Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROMO1.259e-2028.74Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROWI2.804e-2028.92Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ANOGA3.662e-2028.23Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROVI4.783e-2028.51Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_AEDAE6.247e-2028.06Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_CULQU8.159e-2028.06Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PANTR1.392e-1927.20Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MACFA1.392e-1927.20Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34001E04EF PostHarvC1 Citrus clementina cDNA clone C34001E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929885 ID=FC929885; Name=FC929885; organism=Citrus clementina; type=EST; length=732bp
AGAGAAGGTCATAGTTCACCCGCTCGTCTTACTAAGCATCGTCGACAATT
ACAACCGCGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCCTC
GGTAGCTCCTTCAAAGGCACCGTCGATGTCTCCAACAGCTACGCAGTGCC
TTTTGAGGAAGATGACAAAGACCCAGGAATATGGTTTCTCGACCACAACT
ACCATGAATCAATGTATTCAATGTTCAAAAGAATCAATGCCAAGGAGCAT
GTCGTAGGTTGGTACAGTACAGGACCCAAGCTACGAGAGAATGATCTTGA
CATTCACCAATTATTTCACAACTATGTCCCAAATCCTGTATTGGTCATTA
TTGATGTCCAACCAAAGGAGCTTGGAATACCCACCAAGGCTTACTATGAT
GTTGAGGAGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGT
ACACGTGCCATCAGAAATTGCCGCTCATGAAGTCGAAGAAATCGGAGTGG
AGCACTTGCTAAGGGACGTGAAAGACACCACCATCAGTACACTTGCAAAT
GAGGTCACTGGAAAACTTACAGCCCTAAAGGGTCTGGATGCTCGTTTGCG
TGAGATCCGTGGTTACCTTGACCTTGTTATTGATGAGAAACTTCCGTTGA
ATCACGAGATACTTTACCATTTACAGGATGTGTTTAACCTTTTACCGAAT
CTGAATGTGGCTGAATTNAATCAGGCCTTTTC
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