FC929885

Overview
NameFC929885
Unique NameFC929885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_HUMAN (Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 65/239 (27.20%), Postives = 125/239 (52.30%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTG---KLTALKGLDARLRE----IRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNL 703
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++    T  S   N V G    L  + G  AR+++    +  Y + V+  K+  ++ +   L  + N +P +
Sbjct:   92 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK----TCFS--PNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKI 318          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EI3F1_DROYA (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila yakuba GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 71/249 (28.51%), Postives = 127/249 (51.00%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV------KDTTISTLAN--EVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  +AY  ++        KS  +F  +P E+ ++E E  G++ L + V      +  T+  + +  +++   T L+ L   L  I  Y+D VI  K+  ++ +   L D+ + +P++   +  Q F
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGG--KSGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAHRPKTVPPMLDLAQISEASTKLQSL---LDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMF 247          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EI3F1_DROSI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila simulans GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 71/249 (28.51%), Postives = 127/249 (51.00%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV------KDTTISTLAN--EVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  +AY  ++        KS  +F  +P E+ ++E E  G++ L + V      +  T+  + +  +++   T L+ L   L  I  Y+D VI  K+  ++ +   L D+ + +P++   +  Q F
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGG--KSGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAHRPKTVPPMLDLAQISEASTKLQSL---LDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMF 247          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EI3F1_DROSE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila sechellia GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 71/249 (28.51%), Postives = 127/249 (51.00%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV------KDTTISTLAN--EVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  +AY  ++        KS  +F  +P E+ ++E E  G++ L + V      +  T+  + +  +++   T L+ L   L  I  Y+D VI  K+  ++ +   L D+ + +P++   +  Q F
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGG--KSGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAHRPKTVPPMLDLAQISEASTKLQSL---LDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMF 247          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EI3F1_DROME (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila melanogaster GN=eIF3-S5-1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 71/249 (28.51%), Postives = 127/249 (51.00%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV------KDTTISTLAN--EVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  +AY  ++        KS  +F  +P E+ ++E E  G++ L + V      +  T+  + +  +++   T L+ L   L  I  Y+D VI  K+  ++ +   L D+ + +P++   +  Q F
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGG--KSGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAHRPKTVPPMLDLAQISEASTKLQSL---LDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMF 247          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EI3F1_DROER (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila erecta GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.392e-19
Identity = 71/249 (28.51%), Postives = 127/249 (51.00%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV------KDTTISTLAN--EVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  +AY  ++        KS  +F  +P E+ ++E E  G++ L + V      +  T+  + +  +++   T L+ L   L  I  Y+D VI  K+  ++ +   L D+ + +P++   +  Q F
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGG--KSGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAHRPKTVPPMLDLAQISEASTKLQSL---LDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMF 247          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EI3F1_DROAN (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila ananassae GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.818e-19
Identity = 71/247 (28.74%), Postives = 123/247 (49.80%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV------KDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V VHP+VL  +VD Y R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N  E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  +AY  ++        KS  +F  +P E+ ++E E  G++ L + V      +  T+  +  ++     A + L   L  I  Y+D VI  K+  ++ +   L D+ + +P++   +  Q F
Sbjct:    8 VRVHPVVLFQVVDAYERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNPNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGG--KSGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAHRPKTVPPML-DLAQISEASQKLQQLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMF 247          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EI3F1_DROGR (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila grimshawi GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 69/247 (27.94%), Postives = 126/247 (51.01%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV------KDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V VHP+VL  +VD + R   D+  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N+ E VVGW++TG ++  +   IH+ +     NPV + +D   +   +  +AY  ++        K+  +F  +P E+ ++E E  G++ L + V      +  T+  +  ++     A + L + L  I  Y+D VI  K+  ++ +   L D+ + +P++   +  Q F
Sbjct:    8 VRVHPVVLFQVVDAFERRNADSH-RVIGTLLGSVDKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNESVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAQRPKTVPPML-DLAQISEASQKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMF 247          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_MOUSE (Eukaryotic translation initiation factor 3 subunit F OS=Mus musculus GN=Eif3f PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.049e-19
Identity = 65/239 (27.20%), Postives = 125/239 (52.30%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTG---KLTALKGLDARLRE----IRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNL 703
            V +HP++L SIVD+Y R   +   RV+G LLG+  K +V+V+N ++VP  E + +  +   D  + ++MY + K+++  E ++GWY+TG  + E+ + IH+ +    PNP+ + +D   +   +  KAY  V  +     +    +F  +  + A ++ E IGV+ +++    T  S   N V G    L  + G  AR+++    +  Y + V+  K+  ++ +   L  + N +P +
Sbjct:   96 VRLHPVILASIVDSYER-RNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSRESPNPIHLTVDTGLQHGRMSIKAY--VSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMK----TCFS--PNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKI 322          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPS (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 68/249 (27.31%), Postives = 128/249 (51.41%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV------KDTTISTLAN--EVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V VHP+VL  +VD + R   ++  RV+G LLGS  KG V+V+N + VP +E D        + +Y   MY + +++N+ E VVGW++TG  +  +   IH+ +     NPV + +D   +   +  ++Y  ++        K+  +F  +P E+ ++E E  G++ L + V      +  T+  + +  +++   T L+ L   L  I  Y+D VI  K+  ++ +   L D+ + +P+++  +  Q F
Sbjct:    8 VRVHPVVLFQVVDAFERRNAESH-RVIGTLLGSVEKGVVEVTNCFCVPHKEHDDQVEA---ELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGG--KTGCMFTPIPVELTSYEPETFGLKLLQKTVGVAPANRPKTVPPMLDLAQISEASTKLQSL---LDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMSHEQFTQMF 247          
The following BLAST results are available for this feature:
BLAST of FC929885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
EIF3F_HUMAN1.392e-1927.20Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROYA1.392e-1928.51Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROSI1.392e-1928.51Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROSE1.392e-1928.51Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROME1.392e-1928.51Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROER1.392e-1928.51Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROAN1.818e-1928.74Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROGR2.374e-1927.94Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MOUSE4.049e-1927.20Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROPS2.010e-1827.31Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34001E04EF PostHarvC1 Citrus clementina cDNA clone C34001E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929885 ID=FC929885; Name=FC929885; organism=Citrus clementina; type=EST; length=732bp
AGAGAAGGTCATAGTTCACCCGCTCGTCTTACTAAGCATCGTCGACAATT
ACAACCGCGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCCTC
GGTAGCTCCTTCAAAGGCACCGTCGATGTCTCCAACAGCTACGCAGTGCC
TTTTGAGGAAGATGACAAAGACCCAGGAATATGGTTTCTCGACCACAACT
ACCATGAATCAATGTATTCAATGTTCAAAAGAATCAATGCCAAGGAGCAT
GTCGTAGGTTGGTACAGTACAGGACCCAAGCTACGAGAGAATGATCTTGA
CATTCACCAATTATTTCACAACTATGTCCCAAATCCTGTATTGGTCATTA
TTGATGTCCAACCAAAGGAGCTTGGAATACCCACCAAGGCTTACTATGAT
GTTGAGGAGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGT
ACACGTGCCATCAGAAATTGCCGCTCATGAAGTCGAAGAAATCGGAGTGG
AGCACTTGCTAAGGGACGTGAAAGACACCACCATCAGTACACTTGCAAAT
GAGGTCACTGGAAAACTTACAGCCCTAAAGGGTCTGGATGCTCGTTTGCG
TGAGATCCGTGGTTACCTTGACCTTGTTATTGATGAGAAACTTCCGTTGA
ATCACGAGATACTTTACCATTTACAGGATGTGTTTAACCTTTTACCGAAT
CTGAATGTGGCTGAATTNAATCAGGCCTTTTC
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