FC929885

Overview
NameFC929885
Unique NameFC929885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_USTMA (Eukaryotic translation initiation factor 3 subunit F OS=Ustilago maydis GN=UM00175 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.473e-16
Identity = 67/217 (30.88%), Postives = 111/217 (51.15%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLF------HNYVPNPVLVIID-VQPKELGIPTKAYYDVEEVKENATQKSQK-VFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANE-VTGKLTALKGLDARLREIRGYLDLVI 631
            V VHP+ L SI+D+Y R   D + RV+G LLG+  +  +++ N +AVP  ED ++  +  +D  YH SMY + +++   E +VGWY+T P+L      I   +      H  V   +   ID  +P  LGI  K+Y         AT K++  VF+ +P+ +  H   E            +++S LA++ ++  LT L  L   L++++  LD V+
Sbjct:   32 VHVHPVALFSILDHYLR-RNDGQHRVIGTLLGTRTESEIEIKNCFAVPHLEDAEEGQVQ-VDMEYHRSMYELCQKVRPDEVIVGWYATSPELNTYSALIQDFYSRETAPHQAVHLTMDTTIDGSKPSGLGI--KSYI---SSPLGATPKAENCVFLPLPTNL-LHSTPE-----------HSSLSLLASQNISSPLTDLDALAVSLKQVQSQLDRVL 229          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_DICDI (Eukaryotic translation initiation factor 3 subunit F OS=Dictyostelium discoideum GN=eif3f PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.592e-15
Identity = 61/239 (25.52%), Postives = 111/239 (46.44%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNR--VAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPN--PVLVIID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLN 706
            V VHP+V+ +I+D+Y R  V +D   RV+G LLG +  G +++ N + V   E ++      ++  Y   M  +  + + +E ++GWY+TG  + EN + I+  + + + N  P+ + +D  +    +GI     Y    +  N        F  +P EI   E E  G+E + +   D   ++L +E+     +L  LD  L  I  Y++ V   ++  +  +   L      LP  N
Sbjct:   15 VKVHPVVIFNILDHYIRRNVGQD---RVIGTLLGFNNDGVLEIRNCFPVVHSETEQIA----VEMEYQRKMLDLHLKSSPREPIIGWYATGNDINENSVHINNFYRDEMGNSTPIHLTVDTGLTNDTMGIHA---YMAHNLSLNPESSLGSYFSQLPLEILTFEAENAGLESIAQTKYDQQSTSLLSELESLQGSLTKLDEMLESITSYIESVEKGEIQGDPRLGRFLAKTIQALPKAN 243          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_BOMMO (Eukaryotic translation initiation factor 3 subunit F OS=Bombyx mori GN=eIF3-S5 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.592e-15
Identity = 59/209 (28.23%), Postives = 102/209 (48.80%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDV----KDTTISTLANEVTGKLTALKGLDARLREIRGYLD 622
            V VHP+VL  IVD Y R   D+  RV+G L G+S KG V+V+N + VP +E          + NY   +Y + +R+N+ E +VGW++TG ++  +   IH+ +      PV V +D       +  +AY  V     N  Q    +F  V   +  +E E +G++   + V    + ++     +++   ++A   L++ L +   Y D
Sbjct:    7 VKVHPVVLFQIVDAYERRNADSH-RVIGTLWGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVCVPLGVPNGKQGC--MFTPVDVTLTCYEPEIVGLQVCQKTVSGGGRGSSGVAAGSDLAQVMSAASSLESLLEQALQYAD 209          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: CSN6A_ARATH (COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana GN=CSN6A PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 63/255 (24.71%), Postives = 115/255 (45.10%), Query Frame = 2
Query:   14 VHPLVLLSIVDNYNRVAKDTRK----------------------RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIID--VQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL--LRDVKDTTIST-LANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLP 697
            +HPLV+++I D+Y RV                            RV G ++G     TV++ NS+ + +     DP    LD ++ E    ++K++    +++GWYSTG    E+D+ IH+   +   +PV V+++  +   +  +P   Y     V +      Q +F H    I   E E I V+H+  L+     + +T LA  +TG  +A+K L++R+R +   L  +       ++ +L  +  +   LP
Sbjct:   13 LHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYGCVIGVQRGRTVEIFNSFELLY-----DPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGI---PQLIFAHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQKGDKSCDNSVLRQVSSLLRRLP 259          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_MALGO (Eukaryotic translation initiation factor 3 subunit F OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=MGL_1945 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 71/257 (27.63%), Postives = 114/257 (44.36%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKD-TRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDI----------HQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL-----------------LRDVK---DTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVF 685
            V VHP+ L SI+D+Y R  +D ++ RV+G LLG+  +  V+V N++AVP  E  +DP    LD  +H  M  +  R+   E V+GWYST  +L  N   I          HQ  H      + +  +V  +  G+  + Y  V  +     +     F+ +P+ +     E+  + HL                 L DV+   D  ++ +   + G++   K +   L +  G +   +DE L L      HLQDVF
Sbjct:   33 VKVHPVALFSILDHYLR--RDVSQPRVIGTLLGTRSESEVEVRNAFAVPHGES-QDPWQIHLDAEHHRRMLDLHLRVRPDEVVLGWYSTNTELNSNSALIQDHYSRETAPHQAIH------LTLNTNVADEANGLGVQCY--VSALLGAMAKPEDCAFLSLPTHLLMSTPEQTALRHLAAPKPQNITDLDALKASLEDVQAKLDRVLTYVRRVLAGEVEGDKAVGRYLSDTIGVVPAGLDESL-LESLFQSHLQDVF 277          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPOR (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus oryzae GN=AO090005001590 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 66/250 (26.40%), Postives = 118/250 (47.20%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGS-SFKGT-VDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNY----VPNP-VLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL--LRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V++HP  L SI+D+  R   D ++RV+G LLG+ S  GT V++  ++AV   E      +   D  Y + M ++  + N KE +VGWY+T  +L      I   +        P+P V + +  +P +  + T+AY                 F+ VP EI   E E+ G+E +   RDV ++  + +  ++     A++ +   +  +  Y++ VIDE+ P +  +   L +   L P +  A+  + F
Sbjct:   30 VVIHPQALFSILDHSLRRNAD-QERVIGTLLGTRSEDGTEVEIRTTFAVGHTETTDQVEV---DMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTFPHPAVHLTVSTEPGK-DVETRAYISAPVGVTAERAADSAAFIPVPYEIRYGETEKSGLESIAAARDV-ESRAANIFTDIEALERAVEEVLGMIDRVSKYVESVIDEEAPASTALGQFLLNALALAPKVEPADIERDF 273          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPTN (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_08559 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 66/250 (26.40%), Postives = 117/250 (46.80%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGS-SFKGT-VDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNY----VPNP-VLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL--LRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V++ P  L SI+D+  R   D ++RV+G LLG+ S  GT V++ +++AV   E      +   D  Y + M ++  + N KE +VGWY+T  +L      I   +        P+P V + +  +P +  I T+AY                 F+ VP EI   E E+ G+E +   RD ++   + L  ++     A++ +   +  +  Y++ VIDE+ P +  +   L +   L P +  A+  + F
Sbjct:   30 VVIQPQALFSILDHSLRRNAD-QERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEV---DMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTFPHPAVHLTVSTEPGK-DIETRAYISAPVGVTAERAADSAAFIPVPHEIRYGETEKSGLEAIAAARDAEERA-ANLFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPASTALGQFLLNALALAPKVEPADIERDF 273          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EI3F2_DROAN (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila ananassae GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 59/211 (27.96%), Postives = 101/211 (47.87%), Query Frame = 2
Query:    5 KVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPN--PVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVI 631
            KV++ PLVL  I+D+Y R  KD   +++G LLG S    + ++N + V   ++  D     LD  Y   M  + +    +E V+GW+STG  +  + L +H  +     +  P+ +++D   K   + T+ Y  VE      T+    +F  VP E+A+   E +     LR ++   +   A +V   L  L  +    RE++  LDLV+
Sbjct:   10 KVVLQPLVLFQIIDSYERRPKDA-TQIIGTLLGRSNGKEITITNCFTV-LHKEHPDSARIDLDLGYANDMLELNQLTYPQEKVLGWFSTGKSVSRSALLLHDYYSRECSDGQPLHLLVDATLKGQRLSTRLYCGVEMGVPGGTK--GLMFSLVPLEMASDSAEMVA----LRLMQKQNLQPGAKQVGRILPELVQVVEATRELQLRLDLVL 212          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_NEOFI (Eukaryotic translation initiation factor 3 subunit F OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_016300 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 68/255 (26.67%), Postives = 116/255 (45.49%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGS-SFKGT-VDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNY----VPNP-VLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRG-------YLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V++ P  + SI+D+  R   D ++RV+G LLG+ S  GT V++ +++AV   E      +   D  Y + M ++  + N KE +VGWY+T  +L      I   +        P+P V + +  +P +  I T+AY                 F+ VP EI   E E+ G+E  +   KD       +  T   T ++ L+  + E+ G       Y++ VIDE+ P +  +   L +   L P +  A+  + F
Sbjct:   30 VVIQPQAIFSILDHSLRRNAD-QERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEV---DMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTEPGK-DIETRAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLE-TIASAKDA-----ESRATNIFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPASTALGQFLLNALALAPKVEPADIERDF 273          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPNC (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An08g00880 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 63/249 (25.30%), Postives = 114/249 (45.78%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGS-SFKGT-VDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNY----VPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL--LRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V++ P  L SI+D+  R   D ++RV+G LLG+ S  GT V++ +++AV   E      +   D  Y + M ++  + N KE +VGWY+T  +L      I   +        P+P + +         I T+AY                 F+ VP EI   E E+ G+E +   RD ++   + +  ++     A++ +   +  +  Y++ VIDE+ P +  +  +L +   L P +  A+  + F
Sbjct:   30 VVIQPQALFSILDHSLRRNAD-QERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEV---DMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTEAGKDIETRAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLEAIGAARDAEERR-ANIFTDIEALERAIEDVLGMIDRVSRYVESVIDEEAPASTALGQYLLNTLALAPKVEPADIERDF 273          
The following BLAST results are available for this feature:
BLAST of FC929885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
EIF3F_USTMA5.473e-1630.88Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_DICDI1.592e-1525.52Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_BOMMO1.592e-1528.23Eukaryotic translation initiation factor 3 subunit... [more]
CSN6A_ARATH1.761e-1424.71COP9 signalosome complex subunit 6a OS=Arabidopsis... [more]
EIF3F_MALGO5.122e-1427.63Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPOR1.490e-1326.40Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPTN7.397e-1326.40Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROAN1.262e-1227.96Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_NEOFI1.648e-1226.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPNC1.648e-1225.30Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34001E04EF PostHarvC1 Citrus clementina cDNA clone C34001E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929885 ID=FC929885; Name=FC929885; organism=Citrus clementina; type=EST; length=732bp
AGAGAAGGTCATAGTTCACCCGCTCGTCTTACTAAGCATCGTCGACAATT
ACAACCGCGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCCTC
GGTAGCTCCTTCAAAGGCACCGTCGATGTCTCCAACAGCTACGCAGTGCC
TTTTGAGGAAGATGACAAAGACCCAGGAATATGGTTTCTCGACCACAACT
ACCATGAATCAATGTATTCAATGTTCAAAAGAATCAATGCCAAGGAGCAT
GTCGTAGGTTGGTACAGTACAGGACCCAAGCTACGAGAGAATGATCTTGA
CATTCACCAATTATTTCACAACTATGTCCCAAATCCTGTATTGGTCATTA
TTGATGTCCAACCAAAGGAGCTTGGAATACCCACCAAGGCTTACTATGAT
GTTGAGGAGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGT
ACACGTGCCATCAGAAATTGCCGCTCATGAAGTCGAAGAAATCGGAGTGG
AGCACTTGCTAAGGGACGTGAAAGACACCACCATCAGTACACTTGCAAAT
GAGGTCACTGGAAAACTTACAGCCCTAAAGGGTCTGGATGCTCGTTTGCG
TGAGATCCGTGGTTACCTTGACCTTGTTATTGATGAGAAACTTCCGTTGA
ATCACGAGATACTTTACCATTTACAGGATGTGTTTAACCTTTTACCGAAT
CTGAATGTGGCTGAATTNAATCAGGCCTTTTC
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