FC929885

Overview
NameFC929885
Unique NameFC929885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPFU (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus fumigatus GN=AFUA_1G09330 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 68/255 (26.67%), Postives = 116/255 (45.49%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGS-SFKGT-VDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNY----VPNP-VLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRG-------YLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V++ P  + SI+D+  R   D ++RV+G LLG+ S  GT V++ +++AV   E      +   D  Y + M ++  + N KE +VGWY+T  +L      I   +        P+P V + +  +P +  I T+AY                 F+ VP EI   E E+ G+E  +   KD       +  T   T ++ L+  + E+ G       Y++ VIDE+ P +  +   L +   L P +  A+  + F
Sbjct:   30 VVIQPQAIFSILDHSLRRNAD-QERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEV---DMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTEPGK-DIETRAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLE-AIASAKDA-----ESRATNIFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPASTALGQFLLNALALAPKVEPADIERDF 273          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPFC (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_008750 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 68/255 (26.67%), Postives = 116/255 (45.49%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGS-SFKGT-VDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNY----VPNP-VLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRG-------YLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V++ P  + SI+D+  R   D ++RV+G LLG+ S  GT V++ +++AV   E      +   D  Y + M ++  + N KE +VGWY+T  +L      I   +        P+P V + +  +P +  I T+AY                 F+ VP EI   E E+ G+E  +   KD       +  T   T ++ L+  + E+ G       Y++ VIDE+ P +  +   L +   L P +  A+  + F
Sbjct:   30 VVIQPQAIFSILDHSLRRNAD-QERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEV---DMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTEPGK-DIETRAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLE-AIASAKDA-----ESRATNIFTDIEALERAIEEVLGMIDRVSRYVESVIDEEAPASTALGQFLLNALALAPKVEPADIERDF 273          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPCL (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus clavatus GN=ACLA_026150 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 64/254 (25.20%), Postives = 112/254 (44.09%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGS-SFKGT-VDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNY----VPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRG-------YLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V++ P  + SI+D+  R   D ++RV+G LLG+ S  GT V++ +++AV   E      +   D  Y + M ++  + N KE +VGWY+T  +L      I   +        P+P + +         I T+AY                 F+ VP EI   E E+ G+E +      ++     N  T   T ++ L+  + ++ G       Y++ VIDE+ P +  +   L +   L P +  A+  + F
Sbjct:   30 VVIQPQAIFSILDHSLRRNAD-QERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEV---DMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTEAGKDIETRAYISAPVGVTAERAADSAAFIPVPYEIRYGEAEKSGLEAI------SSARDAENRATNIFTDIEALERAIEDVLGMIDRVSRYVESVIDEEAPASTALGQFLLNTLALAPKVEPADIERDF 273          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EI3F2_DROPS (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 58/248 (23.39%), Postives = 112/248 (45.16%), Query Frame = 2
Query:    5 KVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLG--SSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPN--PVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            KV++HPLVL  I+D Y R AKD    V+G LLG  +   G ++++N ++V       +     LD  Y   M  + +    +E V+GW+STG  +    +++H+ +     N  P+ +++D   +   + T+ +  V       T+    +F  +P +I     + + + H+ R     T     L  E+   + A K +  +L  +  Y++ +++ K   ++ +   L DV   +P +        F
Sbjct:   11 KVLLHPLVLFQIIDAYERRAKDV-PEVLGTLLGTVAGKTGRIEITNCFSVVHRMHGDNNCHIDLDLKYDNDMLELAQIAYPQEKVLGWFSTGKSVSAAAVELHEYYERQCHNGQPLHLLMDTSLRGQRMNTRIFCAVATGVPGGTK--GLMFSLLPMDIYFGSPDIVAMRHMGRQCAQPTKDAGRLLPELEQVVDATKDIQQKLDLVLRYINDILNRKRRPDNTVGRALHDVLTSVPMVEAERFRHMF 255          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: CSN6_DROME (COP9 signalosome complex subunit 6 OS=Drosophila melanogaster GN=CSN6 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 54/246 (21.95%), Postives = 118/246 (47.97%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKD--TRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELG-IPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            + +HPLV+++I +++ R        ++V G L+G      +++ NS+ +  +    +  I   + +Y+      +K++ +    +GWY+TG     +D+ I +        P+++ ++   + +  +P K +   E + +    ++  +FV +   +A  E E IGV+H+ R   + +   S +A  +  + +A+K L+ R++ +  Y+  V   KL  N EIL     + + LP + V    + F
Sbjct:   54 ISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVI---NKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPLSRSVDHLPLKLF---ESLIDLVDGEATMLFVPLTYTLATEEAERIGVDHVARMTSNESGEKSVVAEHLVAQDSAIKMLNTRIKIVLQYIRDVEAGKLRANQEILREAYALCHRLPVMQVPAFQEEF 293          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EI3F2_DROWI (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila willistoni GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 55/248 (22.18%), Postives = 116/248 (46.77%), Query Frame = 2
Query:    5 KVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSF--KGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVP--NPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            K+++ PLVLL I+D Y R  KD  + V+G LLG +    G +++SN + +  ++      I  +D  Y   MY + +    +E ++GWY+TG ++  + +++H+ +       NP+ ++ID   +   +  + Y  V     N T+    +F  +P E+++   E + +  + ++    T  +  +  E+   +   + L  +L  +  Y++  +  K   N+ +   L D    +P ++       F
Sbjct:   10 KILLQPLVLLHIIDAYERRPKDCTQ-VIGTLLGRNNPESGHLEISNCFTLLHKDYPNSDRI-DVDLQYANDMYELNQLTYPQEKIIGWYATGKEVSRSAVNLHEYYARECADGNPMHLLIDTSLRGQRMMMRLYTAVVMGVPNGTK--GLMFSLLPVEMSSGNPESVALNLMKKNALQPTKQVGRILPELVQVVDITRDLQTKLDLVLRYVNETLARKRTPNNTVGRALHDALTSVPLVDAESFRMMF 253          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_PHANO (Eukaryotic translation initiation factor 3 subunit F OS=Phaeosphaeria nodorum GN=SNOG_04858 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 65/251 (25.90%), Postives = 116/251 (46.22%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGS-SFKGT-VDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNY----VPNPV--LVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKD--TTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V + P  + SI+D+  R   D ++RV+G LLG+ S  GT +++ N YAVP  E  +   +   D +Y + M ++  R N +E +VGWY+T   L      I   +        P+P   L +  V  +++   T     +    E A      +F+ VP EI   E E+ G+E L+   KD       +  ++     A++ +   L  +  Y++ V+DE+   +  +   L +  +L P ++ A+  + F
Sbjct:   30 VAIQPQAVFSILDHSLRRPAD-QERVIGTLLGTRSEDGTEIEIRNCYAVPHTETAEQVEV---DMDYQKQMLALHLRANPREVLVGWYATSSDLNTFSALIQNFYSQQGDGTWPHPAVHLTVSTVPGQDIESRTYISAPIGVTAERAADSC--LFIPVPHEIKYGEAEKSGLE-LISSAKDREDRSQEIMTDLDSLERAVQHVLDMLERVSNYVNNVLDEEAEPSSALGQFLMNALSLAPKVDPADIERDF 273          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_COCIM (Eukaryotic translation initiation factor 3 subunit F OS=Coccidioides immitis GN=CIMG_07134 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 65/250 (26.00%), Postives = 114/250 (45.60%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGS-SFKGT-VDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLF----HNYVPNP-VLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHL--LRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            V++ P  + SI+D+  R   D ++RV+G LLG+ S  GT V++   +AV   E      +   D  Y + M ++  + N KE +VGWY+T  +L      I   +        P+P V + +  +P +  I T+ Y                 F+ VP EI   E E  G+E +   RD +D   S+L  ++     +++ +   +  +  Y++ VIDE+ P +  +   L +   L P ++ A+    F
Sbjct:   30 VVIQPQAIFSILDHSLRRNAD-QERVIGTLLGTRSEDGTEVEIRTCFAVGHTETTDQVEV---DMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYGGQGDGTWPHPAVHLTVSTEPGK-DIETRTYISAPVGVTAERAADSAAFIPVPYEIRYSEAERNGLEAIAQARDAEDRA-SSLFTDIETLEKSIEEVLGMIDRVSKYVESVIDEEAPASTALGQFLLNALALAPKVDPADIESDF 273          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EI3F2_DROPE (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila persimilis GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 57/248 (22.98%), Postives = 112/248 (45.16%), Query Frame = 2
Query:    5 KVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLG--SSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN--YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRD--VKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            KV++HPLVL  I+D Y R AKD    V+G LLG  +   G ++++N ++V       +     LD  Y   M  + +    +E VVGW+STG  +    +++H+ +    +   P+ +++D   +   + T+ +  V       T+    +F  +P +I     + + + H+ R   +       L  E+   + A K +  +L  +  Y++ +++ K   ++ +   L DV   +P +        F
Sbjct:   11 KVLLHPLVLFQIIDAYERRAKDV-PEVLGTLLGIVAGKTGRIEITNCFSVVHRMHGDNNCHIDLDLKYDNDMLELAQIAYPQEKVVGWFSTGKAVSAAAVELHEYYERQCHSGQPLHLLMDTSLRGQRMNTRIFCAVATGVPGGTK--GLMFSLLPMDIYFGSPDIVAMRHMGRQCALPPKEAGRLLPELEQVVDATKDIQQKLDLVLRYINDILNRKRRPDNTVGRALHDVLTSVPMVEAERFRHMF 255          
BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_SCHPO (Eukaryotic translation initiation factor 3 subunit F OS=Schizosaccharomyces pombe GN=eif3f PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 63/257 (24.51%), Postives = 113/257 (43.97%), Query Frame = 2
Query:    8 VIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKG--TVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN----------YVPNP---VLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKD-TTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVAEXNQAF 730
            +++ P VL SI+D+  R +++ + RV+G LLG+  +    +++ + +AVP  E  +   +   +  YH +MY +  + N +E VVGWY+T P L      I  L+ +            P+P   + V  DV    L I T   Y    V           FV  P  I   E    G++ +     D + +++L  ++     +   L + +  +  Y+  VID   P N  +  +L   F+L+P +   +  + F
Sbjct:   23 IVIEPAVLFSILDHSTRKSENNQ-RVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVEV---EMEYHRAMYHLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPAEPGTAPLGTYPHPCVHLTVNTDVS-SPLAIKT---YVSSPVGITERLADSCAFVPTPFTIRDDEAVRSGLKAVAAPKNDPSRLASLFTDLQQLRRSTLELLSMIERVSDYVQNVIDGSSPANVAVGRYLMKCFSLIPCVEGQDFEKIF 271          
The following BLAST results are available for this feature:
BLAST of FC929885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
EIF3F_ASPFU1.648e-1226.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPFC1.648e-1226.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPCL2.152e-1225.20Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROPS3.671e-1223.39Eukaryotic translation initiation factor 3 subunit... [more]
CSN6_DROME3.671e-1221.95COP9 signalosome complex subunit 6 OS=Drosophila m... [more]
EI3F2_DROWI1.068e-1122.18Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PHANO1.395e-1125.90Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_COCIM1.395e-1126.00Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROPE2.379e-1122.98Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_SCHPO5.301e-1124.51Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34001E04EF PostHarvC1 Citrus clementina cDNA clone C34001E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929885 ID=FC929885; Name=FC929885; organism=Citrus clementina; type=EST; length=732bp
AGAGAAGGTCATAGTTCACCCGCTCGTCTTACTAAGCATCGTCGACAATT
ACAACCGCGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCCTC
GGTAGCTCCTTCAAAGGCACCGTCGATGTCTCCAACAGCTACGCAGTGCC
TTTTGAGGAAGATGACAAAGACCCAGGAATATGGTTTCTCGACCACAACT
ACCATGAATCAATGTATTCAATGTTCAAAAGAATCAATGCCAAGGAGCAT
GTCGTAGGTTGGTACAGTACAGGACCCAAGCTACGAGAGAATGATCTTGA
CATTCACCAATTATTTCACAACTATGTCCCAAATCCTGTATTGGTCATTA
TTGATGTCCAACCAAAGGAGCTTGGAATACCCACCAAGGCTTACTATGAT
GTTGAGGAGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGT
ACACGTGCCATCAGAAATTGCCGCTCATGAAGTCGAAGAAATCGGAGTGG
AGCACTTGCTAAGGGACGTGAAAGACACCACCATCAGTACACTTGCAAAT
GAGGTCACTGGAAAACTTACAGCCCTAAAGGGTCTGGATGCTCGTTTGCG
TGAGATCCGTGGTTACCTTGACCTTGTTATTGATGAGAAACTTCCGTTGA
ATCACGAGATACTTTACCATTTACAGGATGTGTTTAACCTTTTACCGAAT
CTGAATGTGGCTGAATTNAATCAGGCCTTTTC
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