FC929885

Overview
NameFC929885
Unique NameFC929885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC929885 vs. ExPASy Swiss-Prot
Match: EIF3F_NEUCR (Eukaryotic translation initiation factor 3 subunit F OS=Neurospora crassa GN=1A9.200 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 55/243 (22.63%), Postives = 111/243 (45.68%), Query Frame = 2 
Query:    8 VIVHPLVLLSIVDN-YNRVAKDTRK-RVVGVLLG--SSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHN----YVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEE--IGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLN 706
            V + P  + SI+D+   R  +DT+  RV+G L+G  S     V+V +++A+P  E++    +   D  Y ++M ++  + N +E ++GWY+T  +L      I   F +      P+P + +         I TK Y                +F+ VP ++   + E   +G      D +  + + + +++     AL+ +   L  + G++  V+DE+   NH +  +L +  +L P ++
Sbjct:   31 VNIQPQAVFSIIDHAVRRDDRDTQSTRVIGALVGVRSEDGSEVEVRSTFAIPHTENEDQVEV---DVEYQKNMLALTLKANPRETLLGWYTTSHELNSFSALIQNFFASPETGTFPHPAVHLTIGTEAGATIDTKTYISAPVAVSPERAAESCLFIEVPHKLLFTDAERGALGSVAAAADAESRS-APVVSDIENLAQALETVSDLLERVSGFVGEVLDEERDGNHALGQYLMNALSLAPKVS 269
The following BLAST results are available for this feature:
BLAST of FC929885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
EIF3F_NEUCR9.042e-1122.63Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34001E04EF PostHarvC1 Citrus clementina cDNA clone C34001E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929885 ID=FC929885; Name=FC929885; organism=Citrus clementina; type=EST; length=732bp
AGAGAAGGTCATAGTTCACCCGCTCGTCTTACTAAGCATCGTCGACAATT
ACAACCGCGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCCTC
GGTAGCTCCTTCAAAGGCACCGTCGATGTCTCCAACAGCTACGCAGTGCC
TTTTGAGGAAGATGACAAAGACCCAGGAATATGGTTTCTCGACCACAACT
ACCATGAATCAATGTATTCAATGTTCAAAAGAATCAATGCCAAGGAGCAT
GTCGTAGGTTGGTACAGTACAGGACCCAAGCTACGAGAGAATGATCTTGA
CATTCACCAATTATTTCACAACTATGTCCCAAATCCTGTATTGGTCATTA
TTGATGTCCAACCAAAGGAGCTTGGAATACCCACCAAGGCTTACTATGAT
GTTGAGGAGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGT
ACACGTGCCATCAGAAATTGCCGCTCATGAAGTCGAAGAAATCGGAGTGG
AGCACTTGCTAAGGGACGTGAAAGACACCACCATCAGTACACTTGCAAAT
GAGGTCACTGGAAAACTTACAGCCCTAAAGGGTCTGGATGCTCGTTTGCG
TGAGATCCGTGGTTACCTTGACCTTGTTATTGATGAGAAACTTCCGTTGA
ATCACGAGATACTTTACCATTTACAGGATGTGTTTAACCTTTTACCGAAT
CTGAATGTGGCTGAATTNAATCAGGCCTTTTC
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