FC929889

Overview
NameFC929889
Unique NameFC929889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_XANAC (Glycogen synthase OS=Xanthomonas axonopodis pv. citri GN=glgA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 77/227 (33.92%), Postives = 117/227 (51.54%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN-GMAQDLSWKGPAKKW 678
            VNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+          A+   + RA  T+   +L   M+   M +   W    KK+
Sbjct:  243 VNGIDAS-WDPRTDQYLDSHFSVNQWQGRQANAAQVRKA-FGLRESAG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPEIEQQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE----------ALRRCLERAFRTFRLPSLLSAMRRAAMLRPSGWDVAGKKY 456          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_DEIGD (Glycogen synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=glgA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 87/227 (38.33%), Postives = 115/227 (50.66%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 678
            +NG+D   WNP TD  I    D +     K      L+AE GL    + P++G + RL  QKG D+L  A+P  + E   ++VLG G   +   L      Y  +   V+  N  LAH I AGAD   +PSRFEPCGL Q+ A+RYGT+PIV  TGGLVDTV  G  GF+    + +          A++T  R A  T          MK GM  D SW+G A+ +
Sbjct:  231 LNGLDQDRWNPRTDPDIRPYADPA----GKAANGSVLRAEFGLD---DAPILGVVSRLANQKGIDLLIEALPELV-ERWNVVVLGGGDPLLTAALHGWA--YHPRVAFVSGLNEALAHRIYAGADAFAMPSRFEPCGLSQMIALRYGTLPIVRETGGLVDTV-PGDVGFRFADATTE----------ALATACRDARTTLEDVVEWQSRMKRGMELDFSWEGSARHY 436          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_DEIDV (Glycogen synthase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=glgA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 84/227 (37.00%), Postives = 116/227 (51.10%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKW 678
            +NG+D + WNP TD  +    D +     K    +AL+ E GL      PV+G + RL +QKG D+L  A+P  +  N  ++VLG G   +   LE        +       N  LAH I AG+D   +PSRFEPCGL Q+ AMRYGT+P+V  TGGLVDTV     GF+            P    A+    ++A A +  Q+  E  +   MA D SW GPA+++
Sbjct:  231 INGLDQERWNPRTDPDVPAYSDLA----GKAAATQALRTEFGLD---KAPVLGVVSRLADQKGMDLLIEALPRLV-HNWNVVVLGGGDPLLTAALEGWA--QHPRVSFAQGMNEALAHQIYAGSDAFAMPSRFEPCGLSQMIAMRYGTLPVVRETGGLVDTVPPD-VGFRF----------QPATPEALVEACQQARAAFEDQSDWEARVARAMALDFSWDGPAREY 436          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_YERP3 (Glycogen synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=glgA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.833e-29
Identity = 74/226 (32.74%), Postives = 118/226 (52.21%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWK 660
            +NG+D   W+P +D  +  +YDA   + AK + K  LQ  +GL +  + P+   + RL  QKG D++  A+P  +    Q++VLG+G   +++        +  +      ++   +H IIAG+D IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV     E    G   G    +CEA       A+   +RRA   +   +    + ++ M  D  W+
Sbjct:  245 LNGVDSDIWDPQSDTLLPTRYDAEN-LQAKAINKTHLQTAMGLQLTESKPIFAVVSRLTAQKGLDLVLEALPELLALGGQLVVLGSGDTTLQEAFLAAAAEHSGQVGVQIGYHEAFSHRIIAGSDVILVPSRFEPCGLTQLYGLKYGTLPLVRHTGGLADTVVDCALENLADGSASGFVFNECEA------QALVKAIRRAFVLWSRPKHWRHVQRHAMRLDFGWQ 463          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_ENT38 (Glycogen synthase OS=Enterobacter sp. (strain 638) GN=glgA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.154e-28
Identity = 71/230 (30.87%), Postives = 123/230 (53.48%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQ-MGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPAKKWEE 684
            +NG+D + WNP TD  +  ++   +V D K   K  LQ  +GL V+  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H ++ G+D IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV +  T  + +        A +  +  ++   +RRA   +   +L   + +  MA D SW   A+ + +
Sbjct:  245 LNGVDEKIWNPETDLLLASRFSRDSVED-KAENKRQLQVAMGLKVNDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRLMGGSDVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD--TSLENLADGIATGFAFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWHVAAQSYRD 471          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_XANOR (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae GN=glgA PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 77/227 (33.92%), Postives = 116/227 (51.10%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKW 678
            VNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+          A+   + RA  T+     LA M +  M +   W     K+
Sbjct:  278 VNGIDAS-WDPRTDEYLDSHFSVNQWQGRQDNAAQVRKA-FGLRESTG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPDIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE----------ALRRCLERAFRTFRLPGLLAAMRRAAMLRPSGWDVAGNKY 491          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_XANOP (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=glgA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 77/227 (33.92%), Postives = 116/227 (51.10%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKW 678
            VNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+          A+   + RA  T+     LA M +  M +   W     K+
Sbjct:  278 VNGIDAS-WDPRTDEYLDSHFSVNQWQGRQDNAAQVRKA-FGLRESTG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPDIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE----------ALRRCLERAFRTFRLPGLLAAMRRAAMLRPSGWDVAGNKY 491          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_XANOM (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=glgA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 77/227 (33.92%), Postives = 116/227 (51.10%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA-LAEMMKNGMAQDLSWKGPAKKW 678
            VNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     SV+          A+   + RA  T+     LA M +  M +   W     K+
Sbjct:  278 VNGIDAS-WDPRTDEYLDSHFSVNQWQGRQDNAAQVRKA-FGLRESTG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPDIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE----------ALRRCLERAFRTFRLPGLLAAMRRAAMLRPSGWDVAGNKY 491          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_AGRRK (Glycogen synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=glgA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 79/227 (34.80%), Postives = 118/227 (51.98%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMKNGMAQDLSWKGPAKKW 678
            VNG+D   WNP TD  I   Y AST+ D     K+ ++   GL  D   P+   + RL  QKG D+LA+     +    ++ +LG G   +E  L      +  +    A +N  ++H++ AG D I+IPSRFEPCGL QL+ +RYG VPIVA TGGL DT+ +          +   +   PV    +   +RRA+  +  + +  +M K GM  D+SW   A+++
Sbjct:  245 VNGIDDGIWNPETDPMIARTYGASTLKDRAINRKQVVE-HFGLDDDDG-PIFCVVSRLTWQKGMDLLASISSEIVAMGGKLAILGAGDAALEGALFAAAGRHRGRVGVSAGYNEAMSHLMQAGCDAIIIPSRFEPCGLTQLYGLRYGCVPIVARTGGLNDTIIDANHAALQAKVATGIQ-FSPVTAEGLLQAIRRAIYLFQDRKVWTQMQKQGMKSDVSWGKSAERY 468          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_XANCP (Glycogen synthase OS=Xanthomonas campestris pv. campestris GN=glgA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.968e-28
Identity = 76/227 (33.48%), Postives = 116/227 (51.10%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN-GMAQDLSWKGPAKKW 678
            VNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV++G TGF     S +          A+   + RA  T+   +L   M+   M +   W    KK+
Sbjct:  243 VNGIDAS-WDPRTDEYLDSHFSVNHWQGRQANAAQVRKA-FGLRESTG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPEIEQQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQQASAE----------ALRRCLERAFRTFRLPSLLSAMRRAAMLRPSGWDVAGKKY 456          
The following BLAST results are available for this feature:
BLAST of FC929889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_XANAC6.763e-2933.92Glycogen synthase OS=Xanthomonas axonopodis pv. ci... [more]
GLGA_DEIGD6.763e-2938.33Glycogen synthase OS=Deinococcus geothermalis (str... [more]
GLGA_DEIDV6.763e-2937.00Glycogen synthase OS=Deinococcus deserti (strain V... [more]
GLGA_YERP38.833e-2932.74Glycogen synthase OS=Yersinia pseudotuberculosis s... [more]
GLGA_ENT381.154e-2830.87Glycogen synthase OS=Enterobacter sp. (strain 638)... [more]
GLGA_XANOR1.507e-2833.92Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANOP1.507e-2833.92Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANOM1.507e-2833.92Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_AGRRK1.507e-2834.80Glycogen synthase OS=Agrobacterium radiobacter (st... [more]
GLGA_XANCP1.968e-2833.48Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]

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Properties
Property NameValue
Genbank descriptionC34001E08EF PostHarvC1 Citrus clementina cDNA clone C34001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929889 ID=FC929889; Name=FC929889; organism=Citrus clementina; type=EST; length=695bp
GTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAAATATAT
AGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTCTTCTGA
AGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAATATTCCT
GTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGATATTCT
TGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCC
TTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATA
CTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGC
GCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTG
AACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCT
ATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTAC
AGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAG
TAGATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTAT
GGTACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGACCT
TTCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAA
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