FC929889

Overview
NameFC929889
Unique NameFC929889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_THEEB (Glycogen synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 78/221 (35.29%), Postives = 122/221 (55.20%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSW 657
            +NG+D + ++P +D+ +   Y A T ++ +   K ALQ E+GL V+    ++G + RL EQKG D+L   +  F+   + Q ++LGTG +  E Q+ Q+   +P +      ++  L+  I  GAD  ++PSRFEPCG+ Q+ A+RYG VPIV  TGGLVDTV       Q G+     +  +P+D     T + RA   Y   +    + + GM +D SW
Sbjct:  225 LNGIDTELFDPSSDRALAQNYTADT-LERRRANKIALQEELGLEVNSGAFLVGMVSRLVEQKGLDLLIQILDRFLAYTDSQFVLLGTGDRYYETQMWQIASRFPGRCSVQLLYSDVLSRRIYGGADAFIMPSRFEPCGISQMIALRYGCVPIVRRTGGLVDTVSHHNPEQQTGT-GYCFDRYEPLD---FYTCLVRAWEGYRYKREWHALQQRGMREDFSW 440          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_THET2 (Glycogen synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=glgA PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.275e-27
Identity = 76/228 (33.33%), Postives = 117/228 (51.32%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 684
            +NG+D + ++P  D Y+   Y        K   KEA +   GL      PV+ ++GRL+ QKG D++  A+P  ++   ++ V G G   +++   + E   PE  R +  ++  +A +  AGA+ +L+PSRFEPCGL+Q+ A RYGT P+  + GGL DTVE+G  G       V  E   P  +      + R  A        EM    M +D SW+GPA+ + E
Sbjct:  222 LNGLDTEVFDPGKDPYLPAPYTREDP-SGKARAKEAFRERTGL----RPPVLAYVGRLDYQKGLDLVLKALPRLLEMGFRLYVQGVGDGGLQEAFLRAEEENPEGVRFLPAYDEAMARLAYAGAEAVLVPSRFEPCGLVQMIASRYGTPPVARAVGGLKDTVEDGRAG-------VLFETYHPEGLLYGVLRLFRLGA-------EEMGLRAMEKDFSWEGPARAYRE 430          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_PROM5 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9515) GN=glgA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.275e-27
Identity = 80/234 (34.19%), Postives = 124/234 (52.99%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWE 681
            +NG+D+ EW+P  DK +  +++    ++ +   K  LQ E+GL V+    ++G + RL +QKG D++       +   + QI +LGTG K +E  L QL + YP +      ++  L+ +I  G+D  L+PSRFEPCG+ QL AMRYG++PIV   GGLVDTV          TGF    F       +P+D    +  VR   A     +   +    M+Q+ SW+  A ++E
Sbjct:  225 LNGIDLNEWDPNIDKVLPAQFNIKN-LERRSENKIILQKEMGLEVNSKKYLLGMVSRLVDQKGVDLVLQVSKRLLAYTDSQIAILGTGDKYLESGLWQLALDYPGRFSVFLTYDDSLSRLIYGGSDAFLMPSRFEPCGISQLLAMRYGSIPIVRRVGGLVDTVLPHDPENNCGTGFCFDRF-------EPIDF--YTALVRSWEAFRHKDSWKLLQIRAMSQEFSWQRSALEYE 448          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA2_SYNJA (Glycogen synthase 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.666e-27
Identity = 74/228 (32.46%), Postives = 121/228 (53.07%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 678
            +NG+D ++++P TD  +   +     +  + + K ALQ+ +GL V+ ++ ++G + RL EQKG D+L   +  F+   + Q ++LG+G+   E ++ ++   +P +      +   LA +I  GAD  L+PSRFEPCG+ Q+ AMRYG VPI   TGGLVDTV        +G+        D  +     T + RA   +        + K GMA D SW+  A ++
Sbjct:  236 LNGIDTEKFDPRTDPALEANFSIDD-LSGRAVNKAALQSRLGLTVNPDVFLMGMVARLVEQKGIDLLIQTLDRFLAYSDSQFVLLGSGEAYYEGRIREMAERHPGRMAYQQGYQPQLAQLIYGGADVFLMPSRFEPCGISQMIAMRYGCVPIARRTGGLVDTVSHHIPSKGIGT----GYCFDRYEALDFYTCLARAWEAFQHKDTWQALQKRGMATDFSWQRSALEY 458          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA1_SYNJB (Glycogen synthase 1 OS=Synechococcus sp. GN=glgA1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.666e-27
Identity = 81/233 (34.76%), Postives = 125/233 (53.65%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV---AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT--QALAEMMKNGMAQDLSWKGPAKKWEE 684
            +NG+D   WNP  D++I V+Y A T ++ K   K+AL+  + L  D + P++ +IGRL+EQKG  ++  AI   + +N Q ++LG+  +         E  Y      V     FN  L+H+I AGAD I++PS +EPCGL Q+  ++YGTVP+V   GGLVDTV +            +       D AA+ + + RA+  + T      ++   GM+ D SW  P K++ E
Sbjct:  253 LNGIDYDIWNPEIDRFIPVRYTAQT-LENKAKNKKALRDRLLLQ-DVDKPIVAYIGRLDEQKGVHLVHHAIYRSLFKNAQFVLLGSATERGIGAWFAHEKSYLNNNPDVHIELGFNEELSHLIYAGADIIVVPSHYEPCGLTQMIGLKYGTVPVVRGVGGLVDTVFDRDYDPHKLPEQRNGYVFYHTDPAALESALDRAIDLWYTAPDQFRQLQIQGMSYDYSWNYPGKEYLE 483          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_THET8 (Glycogen synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=glgA PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 76/228 (33.33%), Postives = 117/228 (51.32%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 684
            +NG+D + ++P  D Y+   Y        K   KEA +   GL      PV+ ++GRL+ QKG D++  A+P  ++   ++ V G G   +++   + E   PE  R +  ++  +A +  AGA+ +L+PSRFEPCGL+Q+ A RYGT P+  + GGL DTVE+G  G       V  E   P  +      + R  A        EM    M +D SW+GPA+ + E
Sbjct:  222 LNGLDTEVFDPGKDPYLPAPYTREDP-SGKARAKEAFRERTGL----RPPVLAYVGRLDYQKGLDLVLKALPRLLEMGFRLYVQGVGDGGLQEAFLRAEEENPEGVRFLPAYDEAMARLAYAGAEAVLVPSRFEPCGLVQMIASRYGTPPVARAVGGLKDTVEDGRGG-------VLFETYHPEGLLYGVLRLFRLGA-------EEMGLRAMEKDFSWEGPARAYRE 430          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_ACHLI (Glycogen synthase OS=Acholeplasma laidlawii (strain PG-8A) GN=glgA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 71/183 (38.80%), Postives = 103/183 (56.28%), Query Frame = 1
Query:    1 VNGMDVQE-WNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------EEGFTGFQMGSF 522
            +NG+D Q  +NP TDKY+   Y  S     K L K+ L    GL  + + P+I ++GRL +QKG  ++   +   I+  N + I++G+G K  E     L   YP K      FN  +AH+I   +D  ++PSRFEPCGL Q+ AM+YG++PIV  TGGL D+V       +EG TGF   ++
Sbjct:  241 LNGIDDQNTFNPKTDKYLIKTYSVSNHKSGKNLNKQFLLEHFGLDKNLDEPLIAYVGRLADQKGLGLMEYCLEEVIQYSNAKFILMGSGDKAYEDYFRYLTYKYPNKVGNYIGFNEKIAHIIYGASDIFMMPSRFEPCGLGQMIAMKYGSLPIVRETGGLKDSVIPYNKYTQEG-TGFSFKNY 422          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_PROVI (Glycogen synthase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=glgA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.841e-27
Identity = 70/227 (30.84%), Postives = 120/227 (52.86%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 678
            VNG+D ++WNP TDK I  +Y A   M+ K   K AL  E+ L  D + PV+G I   +E +G+ ++A ++      ++Q+++ G+G +  EKQ  +    +PE             H+ IAG D +L+P + E CG++Q+ AM YGT+P+  + GG+V+T+++       G    D          A+   +  A+A Y  ++   E++   MA+D  WK  A+++
Sbjct:  260 VNGIDTRQWNPSTDKLIKKRY-APERMEGKTENKRALLEEIKLSPDTDRPVVGVIINFDEFQGAGLIAGSLKKLAAMDIQLVICGSGDQKYEKQFREFADAHPETVSLHTDCPDSFIHLAIAGFDILLMPGKIESCGMLQMFAMSYGTIPVAFAGGGIVETIDDYSEKDGYGFIFHD------YTPKALVARLGAAVALYHDSERWKEIVGRAMARDFGWKHSAEEY 479          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_JANSC (Glycogen synthase OS=Jannaschia sp. (strain CCS1) GN=glgA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.841e-27
Identity = 80/227 (35.24%), Postives = 115/227 (50.66%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKW 678
            VNG+D+  WNP TD  I       T    K   K ALQAE GL      P+   + RL +QKG D+L  A+   ++   Q+ VLG+G   +E  L +     P  A  +  ++  L+H ++AG D IL+PSRFEPCGL QL+ +RYGT+P+VA TGGL DTV            +   +   P+   A++    R    Y   +    M++N M Q + W   A ++
Sbjct:  243 VNGIDLDVWNPETDPQI----TPYTTFKGKAANKAALQAEFGLSKAPG-PLCVLVSRLTDQKGIDLLLDAMHVVLERGGQVAVLGSGAPDLEVCLLERADAEPNLAVKIG-YDEALSHRMMAGGDCILVPSRFEPCGLTQLYGLRYGTLPLVALTGGLADTVINASPAALARRVATGIQ-FSPITAEALANAFSRLCDLYADRKTWTAMVRNAMKQPVGWDMSASRY 462          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA2_METCA (Glycogen synthase 2 OS=Methylococcus capsulatus GN=glgA2 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.841e-27
Identity = 81/242 (33.47%), Postives = 128/242 (52.89%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKP--------MEKQLEQ-----LEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKW 678
            VNG+D   WNP  D +I V ++  T+ + K   K+AL+  + L  D   P++ F+GRL+ QKG +++  A+ + + +  Q ++LG+            +++Q        LEI Y E+          LAH++ AG+D +++PSRFEPCGL QL AMRYGT+P+V   GGL DTV ++ F+   +     +       D   + + + RA+A Y        E+MKN M  D SW  P + +
Sbjct:  250 VNGIDYDVWNPEIDPHIPVHFNVDTI-EGKYADKKALRDRL-LLADNEKPIVSFVGRLDPQKGIELIRHALFYTLGQGGQFVLLGSSPDGAINGYFWGLKRQFNDNPDCHLEIGYNEE----------LAHLVYAGSDVMVVPSRFEPCGLTQLIAMRYGTIPVVREIGGLADTVIDKDFSHRPL--HERNGYVFRDYDERGLESALGRAIACYYQYPDHFRELMKNAMRYDYSWNHPGQDY 477          
The following BLAST results are available for this feature:
BLAST of FC929889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_THEEB9.766e-2835.29Glycogen synthase OS=Thermosynechococcus elongatus... [more]
GLGA_THET21.275e-2733.33Glycogen synthase OS=Thermus thermophilus (strain ... [more]
GLGA_PROM51.275e-2734.19Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA2_SYNJA1.666e-2732.46Glycogen synthase 2 OS=Synechococcus sp. (strain J... [more]
GLGA1_SYNJB1.666e-2734.76Glycogen synthase 1 OS=Synechococcus sp. GN=glgA1 ... [more]
GLGA_THET82.176e-2733.33Glycogen synthase OS=Thermus thermophilus (strain ... [more]
GLGA_ACHLI2.176e-2738.80Glycogen synthase OS=Acholeplasma laidlawii (strai... [more]
GLGA_PROVI2.841e-2730.84Glycogen synthase OS=Prosthecochloris vibrioformis... [more]
GLGA_JANSC2.841e-2735.24Glycogen synthase OS=Jannaschia sp. (strain CCS1) ... [more]
GLGA2_METCA2.841e-2733.47Glycogen synthase 2 OS=Methylococcus capsulatus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34001E08EF PostHarvC1 Citrus clementina cDNA clone C34001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929889 ID=FC929889; Name=FC929889; organism=Citrus clementina; type=EST; length=695bp
GTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAAATATAT
AGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTCTTCTGA
AGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAATATTCCT
GTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGATATTCT
TGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCC
TTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATA
CTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGC
GCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTG
AACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCT
ATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTAC
AGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAG
TAGATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTAT
GGTACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGACCT
TTCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAA
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