FC929889

Overview
NameFC929889
Unique NameFC929889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_THECA (Glycogen synthase OS=Thermus caldophilus GN=glgA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.711e-27
Identity = 75/228 (32.89%), Postives = 116/228 (50.88%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 684
            +NG+D + ++P  D Y+   Y        K   KE  +   GL      PV+ ++GRL+ QKG D++  A+P  ++   ++ V G G   +++   + E   PE  R +  ++  +A +  AGA+ +L+PSRFEPCGL+Q+ A RYGT P+  + GGL DTVE+G  G       V  E   P  +      + R  A        EM    M +D SW+GPA+ + E
Sbjct:  223 LNGLDTEVFDPGKDPYLPAPYTREDP-SGKARAKEVFRERTGL----RPPVLAYVGRLDYQKGLDLVLKALPRLLEMGFRLYVQGVGDGGLQEAFLRAEEENPEGVRFLPAYDEAMARLAYAGAEAVLVPSRFEPCGLVQMIASRYGTPPVARAVGGLKDTVEDGRAG-------VLFETYHPEGLLYGVLRLFRLGA-------EEMGLRAMEKDFSWEGPARAYRE 431          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_RHOS4 (Glycogen synthase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=glgA PE=3 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 3.711e-27
Identity = 72/224 (32.14%), Postives = 116/224 (51.79%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE-MMKNGMAQDLSWKGPA 669
            +NG+D   W+P  ++     YDA + + AK   +  L     L V   + ++  + RL  QKG D++   +P FI     + VLGTG  P+E  + +LE+ +P +      ++  L+H++ AG D +L+PSRFEPCGL Q++ +RYG +P+VA TGGL DT+        M +         P +  A +  +RR +  Y   A  E + +N M   + W+  A
Sbjct:  250 LNGVDTDIWSPEVEER---PYDAES-LKAKAENRAVLSGAFKLSVPGPLAIL--VSRLTYQKGIDLIPEVLPDFIAAGGGLAVLGTGDAPLEAAMRELEVRFPGRVGVRIGYDEGLSHLMFAGGDAVLVPSRFEPCGLTQMYGLRYGAIPVVALTGGLADTIINA-NPAAMAAGCATGLTFHPTEPPAFAEALRRLIHLYADPAAWETVQRNAMRHPVGWETSA 466          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_PELLD (Glycogen synthase OS=Pelodictyon luteolum (strain DSM 273) GN=glgA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.847e-27
Identity = 65/231 (28.14%), Postives = 123/231 (53.25%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 678
            VNG+D ++WNP TDK I  ++ A+  MD K   + AL  EV +P +   PV+G I   ++ +G+ ++  ++   +  ++ +++ G G K  EK        +P++            H+ IAG D +++  + E CG++Q+ AM YGT+P+  + GG+V+T++E    G +GF    ++ D          A+ + +  A+  Y  ++   E++   M +D +WKG A+++
Sbjct:  260 VNGIDTRQWNPSTDKLIKKRF-ATDRMDGKLDNRAALSEEVHMPFEDGRPVVGVIMHFDDFQGAVLIEKSLKKLVALDIHLLICGAGDKKYEKSFRDFADAHPDRVSLSTDCPESFLHLAIAGLDMLVMAGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIDEVSEGGGSGFIFREYTPD----------ALVSKLHEAIGLYHDSERWQELVMRAMTRDFAWKGAAEEY 479          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_LEPBP (Glycogen synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=glgA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 81/227 (35.68%), Postives = 114/227 (50.22%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLP-VDRNIPVIGFIGRLEEQKGSDILAAA------IPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGF-TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSW 657
            +NG+D  EWNP  DK I   Y      + K   KE L  E+G P V  ++P+IG IGRL  QKG      A      +PH      + +VLG+G    E     L  + P+       +N  LAH I A +DF L+PS FEPCGL Q+++  YGT+PIV+  GGL DTV+E     F+ G         +P D +++   + RA   + +     ++KN M  D +W
Sbjct:  243 LNGIDPDEWNPKVDKRIFQTYHLQNWKEGKRKNKEHLYREIGRPNVSLDLPLIGLIGRLTYQKGFPTFLQAFLERRHLPH------RYVVLGSGDPETENAFFHLSDMMPDVFYFYKGYNESLAHQIEAASDFFLMPSLFEPCGLNQMYSHVYGTIPIVSRVGGLRDTVDESIDIQFKTGI------VFEPNDKSSLGYALERANDLFVSPERDHVVKNMMNLDWTW 457          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_LEPBA (Glycogen synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=glgA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 81/227 (35.68%), Postives = 114/227 (50.22%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLP-VDRNIPVIGFIGRLEEQKGSDILAAA------IPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGF-TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSW 657
            +NG+D  EWNP  DK I   Y      + K   KE L  E+G P V  ++P+IG IGRL  QKG      A      +PH      + +VLG+G    E     L  + P+       +N  LAH I A +DF L+PS FEPCGL Q+++  YGT+PIV+  GGL DTV+E     F+ G         +P D +++   + RA   + +     ++KN M  D +W
Sbjct:  243 LNGIDPDEWNPKVDKRIFQTYHLQNWKEGKRKNKEHLYREIGRPNVSLDLPLIGLIGRLTYQKGFPTFLQAFLERRHLPH------RYVVLGSGDPETENAFFHLSDMMPDVFYFYKGYNESLAHQIEAASDFFLMPSLFEPCGLNQMYSHVYGTIPIVSRVGGLRDTVDESIDIQFKTGI------VFEPNDKSSLGYALERANDLFVSPERDHVVKNMMNLDWTW 457          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_HYDS0 (Glycogen synthase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=glgA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 76/238 (31.93%), Postives = 115/238 (48.32%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV------EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE------MMKNGMAQDLSWKGPAKKW 678
            +NG+D + WNP TDK +   YD +T    K   K  ++   GL      P+  FI RL +QKG D++  A+   +K     I LG+G    + ++  +            ++N  L+  + AGAD  L+PS +EPCG+ Q+ AMRYG +PIV  TGGL DTV       E  TGF    ++                T+ RA+  Y  + + E      ++ N MAQD SW+   +++
Sbjct:  242 LNGIDTESWNPATDKSLYQNYDINTFKAGKEKNKMYVKELFGLETPHTRPLAAFIARLAKQKGLDLIEKAVDDAVKIGYDFIFLGSGDYYYQGKVLDMVKRNMGYVAARIEYNDILSRKLYAGADMFLMPSEYEPCGIGQMIAMRYGAIPIVHKTGGLADTVVDYNEDNEHGTGFSFEDYT----------YKDFLYTMARAMIVYQKKYIPEDNEWYNIVSNAMAQDFSWRRSVQEY 469          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_FUSNN (Glycogen synthase OS=Fusobacterium nucleatum subsp. nucleatum GN=glgA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 76/200 (38.00%), Postives = 107/200 (53.50%), Query Frame = 1
Query:   94 LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKWEE 684
            +LK  LQ ++GL V+ + P+I  I RL+ QKG D +       +   +Q I+LGTG+K  E      E L+  +      FN  L+  I AGAD  L+PS FEPCGL Q+ AMRYG +P+V  TGGL DTV+    +TG   G       A D +       T++ A+  Y       E++KN   +D SW  PAK+++E
Sbjct:  260 ILKADLQKKLGLDVEEDTPLIVIITRLDRQKGLDYIVEKFDEMMSLGIQFILLGTGEKRYEHFFAYQEYLHKGQVCSYIGFNQELSTEIYAGADIFLMPSVFEPCGLSQMIAMRYGCIPVVRETGGLKDTVKPYNEYTGEGDGFGFKQANADDMI------KTLKYAIKMYHRPNVWQEIIKNAKKRDNSWDKPAKRYKE 453          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA2_SYNJB (Glycogen synthase 2 OS=Synechococcus sp. GN=glgA2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.267e-27
Identity = 77/229 (33.62%), Postives = 120/229 (52.40%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLG-TGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY-GTQALAEMMKNGMAQDLSWKGPAKKW 678
            +NG+D+  ++P TD  +   +     +  +   K  LQA++GL V+ +  ++G + RL EQKG D+L  A+  F+   + Q ++LG +G+   E ++ ++   +P K      +   LA +I  GAD  L+PSRFEPCG+ Q+ AMRYG VPIV  TGGLVDTV        +G+        D  +     T + RA   +   +    + K GMA D SW   A ++
Sbjct:  237 LNGIDIDRFDPRTDPDLEANFSIDD-LSGRAANKATLQAKLGLTVNPDTFLMGMVARLVEQKGIDLLIQALDRFLDYSDAQFVLLGGSGEAYYEGRIREMAERHPGKMAYQKGYQPKLAQLIYGGADAFLMPSRFEPCGISQMIAMRYGCVPIVRRTGGLVDTVSHHIPSKGIGT----GYCFDRYEALDFYTCLARAWEAFQHKETWQALQKRGMASDFSWHRSALEY 460          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_DESHD (Glycogen synthase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=glgA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.080e-26
Identity = 68/196 (34.69%), Postives = 107/196 (54.59%), Query Frame = 1
Query:  109 LQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ--ALAEMMKNGMAQDLSWKGPAKKWEE 684
            LQ ++    +  IP++  I RL EQKG D+L   +   +  +++++VLGTG    E++L++    YP K R +  +   LAH I AGAD  L+PSRFEPCG+ Q+ AM YGT+PIV  TGGL DTV      +G   G    D  A +      +   +++A+  +  Q     ++ +N ++ D SW   A ++ +
Sbjct:  269 LQEQLNFTNNEEIPILSMISRLVEQKGLDLLLHVLDEILALDIRLVVLGTGDAHYEERLQRFAEGYPGKLRVILGYQEELAHRIYAGADIFLMPSRFEPCGIAQMIAMSYGTIPIVRETGGLKDTVRPYSPISGEGNGFTFTDYNAHE------LLYAIQKAVEMFRNQKDTWQKLQENALSSDFSWNRSAARYRD 458          
BLAST of FC929889 vs. ExPASy Swiss-Prot
Match: GLGA_DESDG (Glycogen synthase OS=Desulfovibrio desulfuricans (strain G20) GN=glgA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.080e-26
Identity = 78/233 (33.48%), Postives = 115/233 (49.36%), Query Frame = 1
Query:    1 VNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVD-RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ--ALAEMMKNGMAQDLSWKGPAKKW 678
            +NG D   W P  D+++   Y    +   K   K AL  E+GL       PV+GFIGRL +QKG D+L   I   ++  V +++LG G    E Q+  L   Y  +     ++   LAH I AGAD  L+PSR+EPCGL Q++A+R+GT P+ +S GGL DT+        TGF            D V  A     + +A+  +     A A M++  M    +W+  A ++
Sbjct:  252 LNGADYDIWKPEDDRFLPCTYSPDRLA-GKQRCKRALLDELGLDSSLMERPVLGFIGRLRDQKGIDLLIDNIAQLMERQVGVVILGEGSLEYEAQVLHLMEEYKGRLCARVEYTEDLAHRIQAGADIFLMPSRYEPCGLTQIYALRFGTPPVASSLGGLRDTITPWPAPDATGF----------TFDDVSPAGFLNAIMQAVNLWENDHTAWAGMVRRAMEVSFTWEKAAVQY 473          
The following BLAST results are available for this feature:
BLAST of FC929889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_THECA3.711e-2732.89Glycogen synthase OS=Thermus caldophilus GN=glgA P... [more]
GLGA_RHOS43.711e-2732.14Glycogen synthase OS=Rhodobacter sphaeroides (stra... [more]
GLGA_PELLD4.847e-2728.14Glycogen synthase OS=Pelodictyon luteolum (strain ... [more]
GLGA_LEPBP6.330e-2735.68Glycogen synthase OS=Leptospira biflexa serovar Pa... [more]
GLGA_LEPBA6.330e-2735.68Glycogen synthase OS=Leptospira biflexa serovar Pa... [more]
GLGA_HYDS06.330e-2731.93Glycogen synthase OS=Hydrogenobaculum sp. (strain ... [more]
GLGA_FUSNN6.330e-2738.00Glycogen synthase OS=Fusobacterium nucleatum subsp... [more]
GLGA2_SYNJB8.267e-2733.62Glycogen synthase 2 OS=Synechococcus sp. GN=glgA2 ... [more]
GLGA_DESHD1.080e-2634.69Glycogen synthase OS=Desulfitobacterium hafniense ... [more]
GLGA_DESDG1.080e-2633.48Glycogen synthase OS=Desulfovibrio desulfuricans (... [more]

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Properties
Property NameValue
Genbank descriptionC34001E08EF PostHarvC1 Citrus clementina cDNA clone C34001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929889 ID=FC929889; Name=FC929889; organism=Citrus clementina; type=EST; length=695bp
GTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAAATATAT
AGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTCTTCTGA
AGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAATATTCCT
GTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGATATTCT
TGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAATAGTCC
TTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGAACAGTTGGAGATA
CTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTCCTCTGGC
GCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGCAGATTTG
AACCTTGTGGTCTCATTCAATTACATGCCATGCGTTATGGAACCGTACCT
ATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTAC
AGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAG
TAGATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTAT
GGTACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGACCT
TTCATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAA
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