FC929895

Overview
NameFC929895
Unique NameFC929895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: CH602_BRAJA (60 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groL2 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 50/141 (35.46%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  160 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHID----NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALL---QKVVDNKENAE 558
            G  AR     G   + + VK TLGPKG + +L +S G  R   +T DG T+ K + ++    N  A+++ +++    D  GDGTT+  VLA  ++RE  K VAA ++PM +  G  MA E     L+   +KV  N+E A+
Sbjct:    9 GVDARDRMLRGVDILHNAVKVTLGPKGRNVVLDKSFGAPR---ITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAAAIVREGAKSVAAGMNPMDLKRGIDMAVEAVVADLVKNSKKVTSNEEIAQ 146          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: CH601_GLUDA (60 kDa chaperonin 1 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 54/177 (30.51%), Postives = 85/177 (48.02%), Query Frame = 1
Query:  160 GERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHI----DNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKG 675
            G  AR     G   +AD VK TLGPKG + +L +S G  R   +T DG ++ K + +    +N  A+++ +++   +D  GDGTT+  VLA  ++RE  K VAA ++PM +  G   A     + L +        AET +   +         +++SQ  +  G   V  V   KG
Sbjct:    9 GGDARQRMLRGVDILADAVKVTLGPKGRNVVLDKSFGAPR---ITKDGVSVAKEIELADKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDKAVIAVVEELKKNTKKITTPAETAQVGTISANGEHEIGEMISQAMQKVGSEGVITVEEAKG 182          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: CH601_BURXL (60 kDa chaperonin 1 OS=Burkholderia xenovorans (strain LB400) GN=groL1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  160 GERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHI----DNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDAL---LQKVVDNKENAE 558
            G+ AR     G   +A+ VK TLGPKG + +L+ +  G   TVT DG ++ K + +     N  A+++ +++    D  GDGTT+  VLA  ++RE  K VA+ ++PM +  G   A   A + L    +    NKE A+
Sbjct:    9 GDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGP--TVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVFAAIEELRKISKPCTTNKEIAQ 146          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: CH60_THICR (60 kDa chaperonin OS=Thiomicrospira crunogena (strain XCL-2) GN=groL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  160 GERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHID----NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAE 504
            G  AR     G   +AD VK TLGPKG + +L+ +      TVT DG ++ + + ++    N  A+++ ++S   +D  GDGTT+  VLA  ++RE  K VAA ++PM +  G   A E
Sbjct:    8 GLDAREKMVEGINVLADAVKVTLGPKGRNVVLEKSFGAP--TVTKDGVSVAREIELEDKFMNMGAQMVKEVSSQTNDVAGDGTTTATVLAQSIVREGMKSVAAGMNPMDLNRGIHKAVE 124          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: CH60_THEAB (60 kDa chaperonin OS=Thermosipho africanus (strain TCF52B) GN=groL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 50/173 (28.90%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  163 ERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHID----NPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            E AR A   G  A+AD VK TLGPKG + +++ +      T+TNDG +I K + ++    N  A+++ +++   +D  GDGTT+  VLA  +++E  K V A  +P+ +  G   A     + +  K +  K ++    +D+  +A        +S + E  G+L  +A+ ++
Sbjct:    9 EEARRALERGVDAVADAVKITLGPKGRNVVIEKSWGSP--TITNDGVSIAKEIELEDKFENLGAQLVKEVASKTNDVAGDGTTTATVLAQAMIKEGIKNVTAGANPILVKRGIEKAVAAGVEEI--KKISKKLSS---TNDIAHVAS-------ISANSEEIGKLIAEAMEKV 167          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: CH60_STRSV (60 kDa chaperonin OS=Streptococcus sanguinis (strain SK36) GN=groL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 1
Query:  169 ARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSL----HIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQK--VVDNKENAETFKSDLMKIAMTTLSSKI---LSQDKEHFGQLAVDAVMRLKG 675
            AR +   G   +A+ VK TLGPKG + +L+ +       +TNDG TI K +    H +N  AK++ +++   +D  GDGTT+  VL   ++RE  K V A  +P+ I  G   A   A +AL      V NKE      +     A+++ S K+   +S+  E  G   V  +   KG
Sbjct:   11 ARSSMVRGVDILANTVKVTLGPKGRNVVLEKSFGSP--LITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIEAAVATAVEALKSNSVPVSNKE------AIAQVAAVSSRSEKVGEYISEAMEKVGNDGVITIEESKG 180          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: CH60_STRSA (60 kDa chaperonin OS=Streptococcus sanguis GN=groL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 1
Query:  169 ARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSL----HIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQK--VVDNKENAETFKSDLMKIAMTTLSSKI---LSQDKEHFGQLAVDAVMRLKG 675
            AR +   G   +A+ VK TLGPKG + +L+ +       +TNDG TI K +    H +N  AK++ +++   +D  GDGTT+  VL   ++RE  K V A  +P+ I  G   A   A +AL      V NKE      +     A+++ S K+   +S+  E  G   V  +   KG
Sbjct:   11 ARSSMVRGVDILANTVKVTLGPKGRNVVLEKSFGSP--LITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGIKNVTAGANPIGIRRGIEAAVATAVEALKSNSVPVSNKE------AIAQVAAVSSRSEKVGEYISEAMEKVGNDGVITIEESKG 180          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: CH60_STRS7 (60 kDa chaperonin OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=groL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 55/176 (31.25%), Postives = 87/176 (49.43%), Query Frame = 1
Query:  169 ARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSL----HIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDAL--LQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGS 678
            AR +   G   +AD VK TLGPKG + +L+         +TNDG TI K +    H +N  AK++ +++   +D  GDGTT+  VL   ++RE  K V A  +P+ I  G   A   A +AL  + + V  KE      +     A+++ S K+     E   ++  D V+ ++ S
Sbjct:   11 ARESMVRGVDILADTVKVTLGPKGRNVVLEKAFGSP--LITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVREGLKNVTAGANPIGIRRGIEAATTTAVEALKAVAQPVSGKE------AIAQVAAVSSRSEKVGDYISEAMERVGNDGVITIEES 178          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: CH60_STRPZ (60 kDa chaperonin OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=groL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 55/176 (31.25%), Postives = 86/176 (48.86%), Query Frame = 1
Query:  169 ARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSL----HIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDAL--LQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGS 678
            AR A   G   +AD VK TLGPKG + +L+         +TNDG TI K +    H +N  AK++ +++   +D  GDGTT+  VL   ++ E  K V A  +P+ I  G   A   A +AL  + + V  KE      +     A+++ S K+     E   ++  D V+ ++ S
Sbjct:   11 ARAAMVRGVDMLADTVKVTLGPKGRNVVLEKAFGSP--LITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVHEGLKNVTAGANPIGIRRGIETATATAVEALKAIAQPVSGKE------AIAQVAAVSSRSEKVGEYISEAMERVGNDGVITIEES 178          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: CH60_STRPM (60 kDa chaperonin OS=Streptococcus pyogenes serotype M28 GN=groL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 55/176 (31.25%), Postives = 86/176 (48.86%), Query Frame = 1
Query:  169 ARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSL----HIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDAL--LQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRLKGS 678
            AR A   G   +AD VK TLGPKG + +L+         +TNDG TI K +    H +N  AK++ +++   +D  GDGTT+  VL   ++ E  K V A  +P+ I  G   A   A +AL  + + V  KE      +     A+++ S K+     E   ++  D V+ ++ S
Sbjct:   13 ARAAMVRGVDMLADTVKVTLGPKGRNVVLEKAFGSP--LITNDGVTIAKEIELEDHFENMGAKLVSEVASKTNDIAGDGTTTATVLTQAIVHEGLKNVTAGANPIGIRRGIETATATAVEALKAIAQPVSGKE------AIAQVAAVSSRSEKVGEYISEAMERVGNDGVITIEES 180          
The following BLAST results are available for this feature:
BLAST of FC929895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_BRAJA1.552e-1235.4660 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN... [more]
CH601_GLUDA1.552e-1230.5160 kDa chaperonin 1 OS=Gluconacetobacter diazotrop... [more]
CH601_BURXL1.552e-1233.5760 kDa chaperonin 1 OS=Burkholderia xenovorans (st... [more]
CH60_THICR2.027e-1236.1360 kDa chaperonin OS=Thiomicrospira crunogena (str... [more]
CH60_THEAB2.027e-1228.9060 kDa chaperonin OS=Thermosipho africanus (strain... [more]
CH60_STRSV2.027e-1232.0260 kDa chaperonin OS=Streptococcus sanguinis (stra... [more]
CH60_STRSA2.027e-1232.0260 kDa chaperonin OS=Streptococcus sanguis GN=groL... [more]
CH60_STRS72.027e-1231.2560 kDa chaperonin OS=Streptococcus equi subsp. zoo... [more]
CH60_STRPZ2.027e-1231.2560 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STRPM2.027e-1231.2560 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]

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Properties
Property NameValue
Genbank descriptionC34001F02EF PostHarvC1 Citrus clementina cDNA clone C34001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929895 ID=FC929895; Name=FC929895; organism=Citrus clementina; type=EST; length=702bp
GAGTTTCGGCGGGATCCGAGTATCAAAACCTAGCAGGGTCGAACATCACC
GGTTTAAGATCAGGGTTTCATTTTAGCATCCAGGTTTTAGTTGCCTTCAT
TTACATTTTCTTCGATGGGGGTAGAGAGAATTTTTAGAGATGAAGCTAAC
GAAGAGAAAGGAGAGCGTGCCAGAATGGCATCATTTGTTGGTGCAATGGC
AATTGCTGACTTGGTTAAGACAACCTTAGGGCCAAAGGGAATGGATAAAA
TTCTACAGTCAACCGGCAGAGGACGTGAAGTCACTGTTACGAATGACGGG
GCCACTATACTTAAGTCCCTACACATTGATAATCCAGCTGCTAAAGTCCT
TGTTGACATCTCTAAGGTTCAGGATGATGAAGTTGGTGATGGGACAACTT
CAGTTGTTGTTTTGGCTGGGGAGCTTCTGAGGGAGGCAGAGAAGCTGGTG
GCTGCTAAGATTCACCCAATGACCATAATATCAGGTTTCCGGATGGCAGC
TGAATGCGCTCGCGATGCTTTGTTGCAAAAGGTTGTGGATAACAAAGAGA
ATGCAGAAACATTCAAGTCAGACTTGATGAAGATTGCGATGACTACTTTG
AGTTCAAAAATTCTCTCACAGGATAAAGAACATTTTGGTCAACTGGCTGT
GGATGCTGTTATGAGGCTTAAGGGCAGCACAATTTAGAGTCCATCCAATT
AT
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