FC929895

Overview
NameFC929895
Unique NameFC929895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 74/175 (42.29%), Postives = 114/175 (65.14%), Query Frame = 1
Query:  148 NEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAE-TFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            + +K  + R ++   A A+AD ++T+LGPKGMDK++Q  G+G +VT+TNDGATILK + + +PAA++LV++SK QD E GDGTTSVV++AG LL    KL+   IHP  I   F+ A E      ++ + D     E + +  L+  A T+L+SK++SQ       ++V+AVM++
Sbjct:   26 DRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQD-GKG-DVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKG----IEILTDMSRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKV 194          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.272e-30
Identity = 71/178 (39.89%), Postives = 119/178 (66.85%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAV 660
            I ++    E G+ A   +   A+AI++ V+++LGP+GMDK+L  S G   ++ +TNDG TILK + +++PAAK++V++SK QD  VGDGTT+ V++AG LL++A+ L+   +HP  I  G+RMA+E A+  + +  +  K  A+  K+ L+K+A T+L+SK  S  K+   +++ +AV
Sbjct:    9 ILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLG---DIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDE--ISTKIGADE-KALLLKMAQTSLNSKSASVAKDKLAEISYEAV 180          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.192e-30
Identity = 77/186 (41.40%), Postives = 118/186 (63.44%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDAL--LQKVVDNKE-NAETFKSDLMKIAMTTLSSKILSQDKE--HFGQLAVDAVMRL 669
            + ++  +   G  A   + + A  +A++++++LGPKG+DK+L  S G   +VT+TNDGATI+K + I +PAAK+LV+ +K QD EVGDGTTS VVLAG LL +AE L+   IHP  II G++ A   A + L  L   +D K+ N+   +  L KIA TTL+SK +++  E      + +DA++ +
Sbjct:    7 LLKEGTSRTTGRDALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFG---DVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYNKALELLPQLGTRIDIKDLNSSVARDTLRKIAFTTLASKFIAEGAELNKIIDMVIDAIVNV 189          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 8.192e-30
Identity = 74/175 (42.29%), Postives = 113/175 (64.57%), Query Frame = 1
Query:  148 NEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAE-TFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            + +K  + R ++   A A+AD ++T+LGPKGMDK++Q  G+G +VT+TNDGATILK + + +PAA++LV++SK QD E GDGTTSVV++AG LL    KL+   IHP  I   F+ A E      ++ + D     E + +  L+  A T+L+SK+ SQ       ++V+AVM++
Sbjct:   26 DRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQD-GKG-DVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKG----IEILTDMSRPVELSDRETLLNSATTSLNSKVASQYSSLLSPMSVNAVMKV 194          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 73/176 (41.48%), Postives = 111/176 (63.07%), Query Frame = 1
Query:  136 RDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVM 663
            +D  +   G  A  +  + A A+A+ ++T+LGP G+DK++    +  +VTVTNDGATIL  + +D+  AK++V++SK QDDE+GDGTT VVVLAG LL EAE+L+   IHP+ I  G+  AA  A +  L K+ D+          L++ A TTL SK+++       ++AV+AV+
Sbjct:   22 QDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMM--VDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEH-LDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVL 194          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 73/176 (41.48%), Postives = 111/176 (63.07%), Query Frame = 1
Query:  136 RDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVM 663
            +D  +   G  A  +  + A A+A+ ++T+LGP G+DK++    +  +VTVTNDGATIL  + +D+  AK++V++SK QDDE+GDGTT VVVLAG LL EAE+L+   IHP+ I  G+  AA  A +  L K+ D+          L++ A TTL SK+++       ++AV+AV+
Sbjct:   22 QDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMM--VDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEH-LDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVL 194          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 73/176 (41.48%), Postives = 111/176 (63.07%), Query Frame = 1
Query:  136 RDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLMKIAMTTLSSKILSQDKEHFGQLAVDAVM 663
            +D  +   G  A  +  + A A+A+ ++T+LGP G+DK++    +  +VTVTNDGATIL  + +D+  AK++V++SK QDDE+GDGTT VVVLAG LL EAE+L+   IHP+ I  G+  AA  A +  L K+ D+          L++ A TTL SK+++       ++AV+AV+
Sbjct:   22 QDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMM--VDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEH-LDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVL 194          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.383e-29
Identity = 75/186 (40.32%), Postives = 116/186 (62.37%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQ---KVVDNKENAETFKSDLMKIAMTTLSSKILSQDKE--HFGQLAVDAVMRL 669
            + ++  +   G  A   + + A  +A++++++LGPKG+DK+L  S G   +VT+TNDGATI+K + I +PAAK+LV+ +K QD EVGDGTTS VVLAG LL +AE L+   IHP  II G++ A   A + L Q   ++     N+   +  L KIA TTL+SK +++  E      + +DA++ +
Sbjct:    7 LLKEGTSRTTGRDALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFG---DVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYTKALELLPQLGTRIDIRDLNSSVARDTLRKIAFTTLASKFIAEGAELNKIIDMVIDAIVNV 189          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.383e-29
Identity = 75/181 (41.44%), Postives = 113/181 (62.43%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSDLM-KIAMTTLSSKILSQDKEHFGQLAVDAVMRL 669
            + ++  ++ +G    +++    +A+ D ++TTLGP G DK++    RG EV ++NDGATI+K L I +PAAK LVDI++ QD EVGDGTTSVVV AGELLREA   V   +    II G+R AA+ A + + +  +    + E    DL+ K A T ++SK++  +   F ++ VDAV+ L
Sbjct:   12 VLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDD-RG-EVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTL 190          
BLAST of FC929895 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 76/181 (41.99%), Postives = 115/181 (63.54%), Query Frame = 1
Query:  130 IFRDEANEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGFRMAAECARDALLQKVVDNKENAETFKSD--LMKIAMTTLSSKIL--SQDKEHFGQLAVDAV 660
            I ++      G  A  A+ + A  +A+++K++LGP+G+DK+L       ++TVTNDGATI+K + I +PAAK+LV+++K QD EVGDGTTSVVVLAG LL +AEKL+   +HP  II G+  A E   +AL  ++VD        + D  L +IA TTL+SK +    +++    + +DA+
Sbjct:   10 ILKEGTQRTYGREALRANILAARVLAEMLKSSLGPRGLDKMLVDAFG--DITVTNDGATIVKEMEIQHPAAKLLVEVAKAQDAEVGDGTTSVVVLAGALLEKAEKLLDENLHPTIIIEGYTKAME---EAL--RLVDEAAVPVEVEDDSVLRRIAETTLASKFVGTGPERDKIISMVIDAI 183          
The following BLAST results are available for this feature:
BLAST of FC929895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TCPD_HUMAN4.803e-3042.29T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
THSB_THEAC6.272e-3039.89Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
THSA_SULSO8.192e-3041.40Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
TCPD_PONAB8.192e-3042.29T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPE_PONAB1.070e-2941.48T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_MACFA1.070e-2941.48T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN1.070e-2941.48T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
THSA_SULSH2.383e-2940.32Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
TCPH_SCHPO2.383e-2941.44Probable T-complex protein 1 subunit eta OS=Schizo... [more]
THSA_AERPE3.113e-2941.99Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]

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Properties
Property NameValue
Genbank descriptionC34001F02EF PostHarvC1 Citrus clementina cDNA clone C34001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929895 ID=FC929895; Name=FC929895; organism=Citrus clementina; type=EST; length=702bp
GAGTTTCGGCGGGATCCGAGTATCAAAACCTAGCAGGGTCGAACATCACC
GGTTTAAGATCAGGGTTTCATTTTAGCATCCAGGTTTTAGTTGCCTTCAT
TTACATTTTCTTCGATGGGGGTAGAGAGAATTTTTAGAGATGAAGCTAAC
GAAGAGAAAGGAGAGCGTGCCAGAATGGCATCATTTGTTGGTGCAATGGC
AATTGCTGACTTGGTTAAGACAACCTTAGGGCCAAAGGGAATGGATAAAA
TTCTACAGTCAACCGGCAGAGGACGTGAAGTCACTGTTACGAATGACGGG
GCCACTATACTTAAGTCCCTACACATTGATAATCCAGCTGCTAAAGTCCT
TGTTGACATCTCTAAGGTTCAGGATGATGAAGTTGGTGATGGGACAACTT
CAGTTGTTGTTTTGGCTGGGGAGCTTCTGAGGGAGGCAGAGAAGCTGGTG
GCTGCTAAGATTCACCCAATGACCATAATATCAGGTTTCCGGATGGCAGC
TGAATGCGCTCGCGATGCTTTGTTGCAAAAGGTTGTGGATAACAAAGAGA
ATGCAGAAACATTCAAGTCAGACTTGATGAAGATTGCGATGACTACTTTG
AGTTCAAAAATTCTCTCACAGGATAAAGAACATTTTGGTCAACTGGCTGT
GGATGCTGTTATGAGGCTTAAGGGCAGCACAATTTAGAGTCCATCCAATT
AT
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