FC929944

Overview
NameFC929944
Unique NameFC929944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: AIBP_PIG (Apolipoprotein A-I-binding protein OS=Sus scrofa GN=APOA1BP PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.415e-20
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   91 IVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 318
            I S+DIPSGW VE G+ G  GI+PD+L+SLTAPK  A +F+G +H+LGGRFVPP +  KY+L LPPYP T    R+
Sbjct:  214 IASIDIPSGWDVERGNSG--GIQPDLLISLTAPKKSAAQFTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVYRL 287          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: AIBP_BOVIN (Apolipoprotein A-I-binding protein OS=Bos taurus GN=APOA1BP PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.415e-20
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   91 IVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 318
            I S+DIPSGW VE+G  G  GI+PD+L+SLTAPK  A +F+G +H+LGGRFVPP +  KY+L LPPYP T    R+
Sbjct:  214 IASIDIPSGWDVEKGSSG--GIQPDLLISLTAPKKSATQFTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVYRL 287          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: AIBP_DANRE (Apolipoprotein A-I-binding protein OS=Danio rerio GN=apoa1bp PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.177e-20
Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   91 IVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCV 312
            I SVDIPSGW VE+G    +GI+PDML+SLTAPK  A  F G  HFLGGRFVPPV+  KY+L LP YPGT  CV
Sbjct:  209 IASVDIPSGWDVEKGC--PDGIQPDMLISLTAPKKSAALFKGRFHFLGGRFVPPVLEQKYQLNLPQYPGTE-CV 279          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: YJEFN_DROPS (YjeF N-terminal domain-containing protein GA15549 OS=Drosophila pseudoobscura pseudoobscura GN=GA15549 PE=4 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.670e-19
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   91 IVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 318
            I SVDIPSGW VE+G   +   +P +L+SLTAPKLCA+ F G HH+LGGRFVPP +  KY+L LP Y G+ + VR+
Sbjct:  152 IASVDIPSGWDVEKGKQSECDFEPKLLISLTAPKLCAEHFKGEHHYLGGRFVPPALQRKYQLNLPDY-GSKLVVRL 226          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: YJEFN_DROPE (YjeF N-terminal domain-containing protein GL16587 OS=Drosophila persimilis GN=GL16587 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.670e-19
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   91 IVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 318
            I SVDIPSGW VE+G   +   +P +L+SLTAPKLCA+ F G HH+LGGRFVPP +  KY+L LP Y G+ + VR+
Sbjct:  152 IASVDIPSGWDVEKGKQSECDFEPKLLISLTAPKLCAEHFKGEHHYLGGRFVPPALQRKYQLNLPDY-GSKLVVRL 226          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: YJEN3_HUMAN (YjeF N-terminal domain-containing protein 3 OS=Homo sapiens GN=YJEFN3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.015e-18
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   91 IVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCV 312
            +VS+DIPSGW  E G   ++G++PD+LVSL APK CA +FSG HHF+ GRFVP  +  K+ LRLP Y GT  CV
Sbjct:  224 LVSLDIPSGWDAETGSDSEDGLRPDVLVSLAAPKRCAGRFSGRHHFVAGRFVPDDVRRKFALRLPGYTGTD-CV 296          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: AIBP_MOUSE (Apolipoprotein A-I-binding protein OS=Mus musculus GN=Apoa1bp PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.015e-18
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   91 IVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 318
            I S+DIPSGW VE+G+    GI+PD+L+SLTAPK  A  F+G +H+LGGRFVPP +  KY+L LP YP T    R+
Sbjct:  208 IASIDIPSGWDVEKGN--PSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRL 281          
BLAST of FC929944 vs. ExPASy Swiss-Prot
Match: MU182_SCHPO (Meiotically up-regulated gene 182 protein OS=Schizosaccharomyces pombe GN=mug182 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.806e-15
Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   91 IVSVDIPSGWHVEEGDIGDEGIK---PDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRIGKAP 330
            ++SVD PS W ++EG   +  +K   PD L+SLTAPK C+K + G H +LGGRFV  VI  K+ L LPPYPG    V I   P
Sbjct:  157 VLSVDAPSSWEIDEGPQKEGPLKDFDPDTLISLTAPKPCSKFYKGKH-YLGGRFVSKVITKKFNLSLPPYPGIDQVVDITNKP 238          
The following BLAST results are available for this feature:
BLAST of FC929944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
AIBP_PIG2.415e-2059.21Apolipoprotein A-I-binding protein OS=Sus scrofa G... [more]
AIBP_BOVIN2.415e-2059.21Apolipoprotein A-I-binding protein OS=Bos taurus G... [more]
AIBP_DANRE9.177e-2066.22Apolipoprotein A-I-binding protein OS=Danio rerio ... [more]
YJEFN_DROPS2.670e-1957.89YjeF N-terminal domain-containing protein GA15549 ... [more]
YJEFN_DROPE2.670e-1957.89YjeF N-terminal domain-containing protein GL16587 ... [more]
YJEN3_HUMAN1.015e-1858.11YjeF N-terminal domain-containing protein 3 OS=Hom... [more]
AIBP_MOUSE1.015e-1856.58Apolipoprotein A-I-binding protein OS=Mus musculus... [more]
MU182_SCHPO6.806e-1549.40Meiotically up-regulated gene 182 protein OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionC34002B03EF PostHarvC1 Citrus clementina cDNA clone C34002B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929944 ID=FC929944; Name=FC929944; organism=Citrus clementina; type=EST; length=587bp
CATGGAACCCCAAGGCCACCGTCTGATGATCTGATTAAGAGACTGCTTTG
TCTACATGGTTATGATCAAACACACCAAAAACGCCCAGTTATTGTCTCTG
TAGATATTCCATCTGGTTGGCACGTTGAAGAAGGGGATATTGGGGATGAA
GGCATAAAACCAGACATGCTGGTTTCTTTAACTGCTCCCAAACTGTGTGC
AAAGAAATTCAGTGGTCCTCACCACTTTCTAGGTGGTCGATTTGTCCCAC
CGGTCATTGCAGATAAATATAAGCTTCGTCTTCCACCTTATCCTGGTACT
TCAATGTGTGTACGAATTGGAAAGGCACCAAGCGTTGATATATCAGCTCT
ACGAGAGAATTATATTTCTCCAGAATTCCTTGAGGAGCAAGTTGAATCTG
ACCCCATTAATCAGTTTCGGAAATGGTTTGATGATGCAATTGCTGCAGGA
TTGAGGGAACCAAATGCAATGGCTTTATCAACTGTTGGCAAGGATGGAAA
ACCGTACTTTCTATTCTTTTGATTTCTTTTTCATTCATCAACAANATTAT
GTTCAGTAGATTCATCTGAATTTGCATCTTGTCATTT
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