FC929947

Overview
NameFC929947
Unique NameFC929947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929947 vs. ExPASy Swiss-Prot
Match: B3GT8_ARATH (Probable beta-1,3-galactosyltransferase 8 OS=Arabidopsis thaliana GN=B3GALT8 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.006e-41
Identity = 83/180 (46.11%), Postives = 123/180 (68.33%), Query Frame = 3
Query:    9 LDQDIDSENKQTNDFFILDHHMEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDK-KLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEGKFCCSS-----W--SSGAICA 524
            LD+ ID E+ +  DF  L H +E   +   K +L+F+ A   +DAE+Y KV+DDV+VN+  L  TLA +  +PR+YIGCMKSG V S+ G K++EP++WKFG++   YFRHA+G++Y IS+ LA +IS N+ IL  YA++DVS G+W LGL+V++++E   CC +     W   +G +CA
Sbjct:  179 LDKAIDEEDSEHKDFLRLKH-IEGYHQLSTKTRLYFSTATAMYDAEFYVKVDDDVHVNLGMLVTTLARYQSRPRIYIGCMKSGPVLSQKGVKYHEPEFWKFGEEGNKYFRHATGQIYAISKDLATYISTNQGILHRYANEDVSLGAWMLGLEVEHVDERSMCCGTPPDCQWKAQAGNVCA 357          
BLAST of FC929947 vs. ExPASy Swiss-Prot
Match: B3GTD_ARATH (Probable beta-1,3-galactosyltransferase 13 OS=Arabidopsis thaliana GN=B3GALT13 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.974e-22
Identity = 59/167 (35.33%), Postives = 90/167 (53.89%), Query Frame = 3
Query:   18 DIDSENKQTNDFFILDHHMEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISR-ALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEGKFC---CSSWS 506
            ++ SE    +DF +LD   E  K  P K   FF  A   +D+E+Y K +DD+Y+  D L   LA      + Y+GCMK G VF++P  KWYEP     G  K YF HA G +Y +S   +   +++  +  R ++++DV+ G+W L ++V + N    C   CS +S
Sbjct:  141 ELRSEVAMYDDFILLDIEEEYSK-LPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERGHSQTYLGCMKKGPVFTDPKLKWYEPLADLLG--KEYFLHAYGPIYALSADVVTSLVALKNNSFRMFSNEDVTIGAWMLAMNVNHENLHTLCEPECSPYS 304          
BLAST of FC929947 vs. ExPASy Swiss-Prot
Match: B3GTC_ARATH (Probable beta-1,3-galactosyltransferase 12 OS=Arabidopsis thaliana GN=B3GALT12 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.156e-21
Identity = 57/159 (35.85%), Postives = 85/159 (53.46%), Query Frame = 3
Query:   18 DIDSENKQTNDFFILDHHMEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVIS-RALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEGKFC 491
            +++ E K+  DF +LD   E  +  P K   FF  A   ++A+YY K +DD+Y+  D L   LA      + YIGCMK G V ++P  KWYE      G++  YF HA G +YV+S   +A   +     LR + ++DV+ GSW L +DV + +    C
Sbjct:  167 ELEKEIKEYRDFVLLDTEEEYIR-LPYKTLAFFKAAFKLFEADYYVKADDDIYLRPDRLATLLANERLHSQTYIGCMKKGPVITDPKLKWYEKQGNLIGNE--YFLHAYGPIYVLSAEIVASLAAARNGSLRMFNNEDVTIGSWMLAMDVHHEDNRALC 322          
BLAST of FC929947 vs. ExPASy Swiss-Prot
Match: B3GTE_ARATH (Probable beta-1,3-galactosyltransferase 14 OS=Arabidopsis thaliana GN=B3GALT14 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.576e-21
Identity = 55/155 (35.48%), Postives = 84/155 (54.19%), Query Frame = 3
Query:   30 ENKQTNDFFILDHHMEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISR-ALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEGKFC 491
            E  + +DF +LD   E  K  P K   FF  A   +D+E+Y K +DD+Y+  D L   LA      + Y+GC+K G VF++P  KWYEP     G  K YF HA G +Y +S   +A  +++  +  R + ++DV+ G+W L ++V + N    C
Sbjct:  147 EIAEYDDFVLLDIEEEYSK-LPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERSHSQTYLGCLKKGPVFTDPKLKWYEPLSHLLG--KEYFLHAYGPIYALSADVVASLVALKNNSFRMFNNEDVTIGAWMLAMNVNHENHHILC 298          
BLAST of FC929947 vs. ExPASy Swiss-Prot
Match: SQV2_CAEEL (Beta-1,3-galactosyltransferase sqv-2 OS=Caenorhabditis elegans GN=sqv-2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.145e-15
Identity = 49/153 (32.03%), Postives = 80/153 (52.29%), Query Frame = 3
Query:   30 ENKQTNDFFILDHHMEAPKEFPNKAKLFFAYAVDKWDAEYYAKVNDDVYVNIDSLGATLATHLDKPRVYIGCMKSGDVFSEPGHKWYEPDWWKFGDKKLYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFLGLDVKYLNEGKF 488
            EN++  D  +LD H E+ +    K    F +A   +  +++ K + D +V I  L   L   +  P +Y G +         G KW EP+W    D+ L ++   G  YV+S  L +F++IN  + R Y ++DVS G+W  GLDVKY+++ +F
Sbjct:  114 ENEKFGDLALLDRHEESYERLAKKTLACFVHAFANFKFKFFLKTDIDSFVRITPLIINLK-QIQDPMLYWGFLDGRAKPFRKG-KWKEPEW-NLCDRYLPYQLGGG--YVLSYELIRFLAINAQLFRHYRNEDVSVGAWIGGLDVKYVHDPRF 261          
The following BLAST results are available for this feature:
BLAST of FC929947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
B3GT8_ARATH1.006e-4146.11Probable beta-1,3-galactosyltransferase 8 OS=Arabi... [more]
B3GTD_ARATH3.974e-2235.33Probable beta-1,3-galactosyltransferase 13 OS=Arab... [more]
B3GTC_ARATH1.156e-2135.85Probable beta-1,3-galactosyltransferase 12 OS=Arab... [more]
B3GTE_ARATH2.576e-2135.48Probable beta-1,3-galactosyltransferase 14 OS=Arab... [more]
SQV2_CAEEL6.145e-1532.03Beta-1,3-galactosyltransferase sqv-2 OS=Caenorhabd... [more]

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Properties
Property NameValue
Genbank descriptionC34002B06EF PostHarvC1 Citrus clementina cDNA clone C34002B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929947 ID=FC929947; Name=FC929947; organism=Citrus clementina; type=EST; length=738bp
GGGACAGTTTGGACCAGGATATTGACAGTGAAAATAAGCAGACAAATGAC
TTCTTCATTCTTGATCACCACATGGAGGCACCTAAAGAATTCCCAAATAA
GGCTAAGTTGTTCTTTGCTTATGCTGTGGATAAGTGGGATGCGGAATATT
ATGCTAAAGTCAATGACGATGTATATGTGAATATTGATTCCTTGGGAGCT
ACCCTTGCTACTCATTTGGACAAACCTCGTGTTTATATTGGGTGTATGAA
ATCTGGCGACGTTTTCTCTGAACCAGGCCATAAATGGTATGAACCAGATT
GGTGGAAGTTTGGCGATAAGAAATTATACTTCCGCCATGCATCTGGTGAG
ATGTATGTCATATCACGAGCTCTGGCTAAATTCATATCAATAAACAGATC
CATACTCCGCACCTATGCCCATGATGATGTTAGTGCTGGATCCTGGTTTC
TCGGGCTTGATGTCAAATATCTAAATGAAGGAAAGTTTTGCTGCTCCTCT
TGGTCATCAGGAGCTATCTGCGCAGGAGTTTAATTTAGTTTGGCATCAAC
ATCCCAGGAGGCAGGTATAGACCTGATATTAACAAAGTTTTGGGGGAAGA
TGCCATATTTGACTTGCATTGTTGCAGTTTGCTTTACACAAACATTTCTC
TTATGAAGTTGCTTATAGGCTTCCCATCTGTTCGATAGAAATTGATTACC
CAAAGACAGGAACACAGTGTGTCCCAGAAGAAGCTACT
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