FC929955

Overview
NameFC929955
Unique NameFC929955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R5_HUMAN (NADH-cytochrome b5 reductase-like OS=Homo sapiens GN=CYB5RL PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 46/128 (35.94%), Postives = 70/128 (54.69%), Query Frame = 1
Query:  310 EVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ 693
            E+ + YTP +  +  G+FE++IK Y  G MS +    RVGD    +GP G F Y+P Q     + A G+G+ PM  + ++I +N ND+T V L+    T+E I LK  L   A  +      ++VL+Q
Sbjct:  122 EIQRAYTPISPANAEGYFEVLIKCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFW--NVRTFFVLSQ 247          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA_LOTTE (Nitrate reductase [NADH] (Fragment) OS=Lotus tetragonolobus GN=NIA PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 39/94 (41.49%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  445 KGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHL-IYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ 693
            KGP G   Y          +P   R   M AGG+GITP++QV +A+L++P+D+T++   +Y+N T  DILL+EELD +A K+ D+F ++YV+++
Sbjct:    1 KGPLGHIEYTGKGNFIAHGEPKFARRLAMLAGGTGITPIYQVIQAVLKDPDDRTEMFFAVYSNKTESDILLREELDAWAKKHSDRFKVWYVVDK 94          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA_ASPNG (Nitrate reductase [NADPH] OS=Aspergillus niger GN=niaD PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14
Identity = 45/147 (30.61%), Postives = 76/147 (51.70%), Query Frame = 1
Query:  307 EEVIKPYTPTTLDSDVGHFELVIKMY------PQGRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            E +I+ YTP +  +  G  +L++K+Y        G+M+    ++ +G  +  KGP GRF Y          +   V +F M  GG+GITP+FQV RA++++  D T   ++  N   EDIL + +LD + A    +  + + L + P
Sbjct:  665 EAIIRSYTPISDTNQEGTMDLLVKIYFDTPTVKGGKMTMALEKLALGSEIDCKGPTGRFEYLGNGKILVSGKERHVSSFKMICGGTGITPIFQVLRAVMQDKQDPTSCVVLDGNRQEEDILCRADLDAYEALDSKKCKVVHTLTKAP 811          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA2_MAIZE (Nitrate reductase [NAD(P)H] (Fragment) OS=Zea mays GN=NAR PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 47/152 (30.92%), Postives = 78/152 (51.32%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAIL-ENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            G+  ++ YTPT+   +VGHF+L+IK+Y +         G MS +   + +G  + +KGP     Y          +    R   M   G G TP     +A+L + P+D T++HL+YAN T  D+LL+EE+D        +  ++YV+++ P
Sbjct:   20 GKLCMRAYTPTSPVDEVGHFDLLIKIYFKDEDPKYPNGGLMSQYLDSLPLGATIDIKGPHRHIEYTGRRRFVVNGKQRHARRLAMIQAGRGTTPDDDTEQAVLRDQPDDDTEMHLVYANRTDHDMLLREEIDRAWLPRTRRLKVWYVVSKVP 171          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R4_XENTR (Cytochrome b5 reductase 4 OS=Xenopus tropicalis GN=cyb5r4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.051e-13
Identity = 45/142 (31.69%), Postives = 75/142 (52.82%), Query Frame = 1
Query:  304 GEEVIKPYTPTTL----DSDVGHF------ELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRF-RYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP 696
            G +++KPYTP       D+    F       L+IK+YP G ++ H   + VGDY+++  P+G F  +Q   V    + A G+GITPM ++ + +L   +   K  LI+ N   EDIL KE+++  +     +F    +L++P
Sbjct:  321 GVDIVKPYTPVASCLLPDAQYSTFCNKQCLYLMIKIYPNGSITPHLENLTVGDYISISNPQGTFSSFQIENVMDVFLVAAGTGITPMIRLLQHVLTCVSSLRKAKLIFFNKKEEDILWKEQVEELSLA-DKRFEAQLILSEP 461          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R4_RAT (Cytochrome b5 reductase 4 OS=Rattus norvegicus GN=Cyb5r4 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 46/143 (32.17%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFE-----------LVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQ-VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP 696
            G E++KPYTP + +S +  F+            +IK+YP G  +     +++GD+++V GP+G F+    Q V    + A G+G TPM  V    L + +   KV L++ N T +DI+ + +L+  A K   +F + YVL+ P
Sbjct:  318 GAEIVKPYTPVS-ESLLSDFKEPVLSPNKYIYFLIKIYPAGLFTPELDRLQIGDFVSVSGPEGNFKVSKLQEVEDLFLLAAGTGFTPMVTVLNHALTHMSSLRKVKLMFFNKTEDDIIWRCQLEKLALK-DKRFHVEYVLSAP 458          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R4_MOUSE (Cytochrome b5 reductase 4 OS=Mus musculus GN=Cyb5r4 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 45/143 (31.47%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFE-----------LVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQ-VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP 696
            G E++KPYTP + DS +  F+            +IK+YP G  +     +++GD+++V GP+G F+    Q V    + A G+G TPM  V    L + +   KV L++ N T +DI+ + +L+  A +   +F + +VL+ P
Sbjct:  334 GAEIVKPYTPVS-DSLLSDFKEPVLSPNKYIYFLIKIYPAGLFTPELDRLQIGDFISVSGPEGNFKVSKLQEVEDLFLLAAGTGFTPMVTVLNYALSHMSSLRKVKLMFFNKTEDDIIWRCQLEKLALR-EKRFDVEFVLSAP 474          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R4_DANRE (Cytochrome b5 reductase 4 OS=Danio rerio GN=cyb5r4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 47/142 (33.10%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  301 QGEEVIKPYT--------PTTLDSDVGH-FELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQP-GQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP 696
            QG +V+KPYT        P+   ++VG    L+IK+YP G ++ H   + +G  L+V GP+G F  +    V    M A G+G TPM ++ R  L++     K+ L++ N    DIL + +LD    K  ++F + +VL++P
Sbjct:  326 QGTDVVKPYTAVDQMLIPPSQSSAEVGSDIHLMIKVYPDGVLTPHIANLPIGASLSVGGPEGSFTLRVLRDVTHLYMLAAGTGFTPMARLIRLALQDFTVIRKMKLMFFNRQERDILWQSQLDELCTK-EERFEVQHVLSEP 466          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R4_BOVIN (Cytochrome b5 reductase 4 OS=Bos taurus GN=CYB5R4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 46/143 (32.17%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFE-----------LVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRY-QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP 696
            G E++KPYTP   DS    F+            +IK+YP G  +    ++++GDY++V  P+G F   Q  ++    + A G+G TPM +V    L N     KV L++ N T +DI+ + +L+  A K   +F + +VL+ P
Sbjct:  318 GTEIVKPYTPVC-DSLFSEFKEPVLPNNIYIYFLIKIYPAGFFTPELDQLQIGDYVSVSNPEGNFIISQLQELEDLFLLAAGTGFTPMVKVLNYALTNIPSLRKVKLMFFNKTEDDIIWRSQLEKLAFK-DKRFEVEFVLSAP 458          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R5_MOUSE (NADH-cytochrome b5 reductase-like OS=Mus musculus GN=Cyb5rl PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLK 627
            G E+ + YTP +  +  G+F+++IK Y  G MS +    R GD    +GP G F Y+P +     M A G+G+ PM  + ++I ++ +D+T V L+    T+E I LK
Sbjct:  122 GLEIQRAYTPISPVTAEGYFDVLIKCYRTGLMSQYVESWRTGDTAFWRGPFGSFLYEPKKYGELLMLAAGTGLAPMVPILQSITDDEDDETFVTLVGCFKTFEGIYLK 229          
The following BLAST results are available for this feature:
BLAST of FC929955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
NB5R5_HUMAN1.645e-1435.94NADH-cytochrome b5 reductase-like OS=Homo sapiens ... [more]
NIA_LOTTE2.148e-1441.49Nitrate reductase [NADH] (Fragment) OS=Lotus tetra... [more]
NIA_ASPNG2.805e-1430.61Nitrate reductase [NADPH] OS=Aspergillus niger GN=... [more]
NIA2_MAIZE8.162e-1430.92Nitrate reductase [NAD(P)H] (Fragment) OS=Zea mays... [more]
NB5R4_XENTR4.051e-1331.69Cytochrome b5 reductase 4 OS=Xenopus tropicalis GN... [more]
NB5R4_RAT6.910e-1332.17Cytochrome b5 reductase 4 OS=Rattus norvegicus GN=... [more]
NB5R4_MOUSE6.910e-1331.47Cytochrome b5 reductase 4 OS=Mus musculus GN=Cyb5r... [more]
NB5R4_DANRE1.179e-1233.10Cytochrome b5 reductase 4 OS=Danio rerio GN=cyb5r4... [more]
NB5R4_BOVIN1.539e-1232.17Cytochrome b5 reductase 4 OS=Bos taurus GN=CYB5R4 ... [more]
NB5R5_MOUSE2.626e-1235.19NADH-cytochrome b5 reductase-like OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC34002C03EF PostHarvC1 Citrus clementina cDNA clone C34002C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929955 ID=FC929955; Name=FC929955; organism=Citrus clementina; type=EST; length=701bp
GAGAGCACCAGAAGATAAGAAATGGAATAAACCGCACACTATTTTCTCTC
CCACCCATTTACTGGTTCCATTTCTTGTTTTGATTTTTGAGTTAAAAATT
TATTCTCTATATACATATATTGATAAATCCGAGGCTTTTAGTTCTTCTAT
TGGTGAGCTTTTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAG
ATGTTCAGCTTCTCGTTGGTGGAGCTGTGGCTGTTTTGGCCATTGCTGTT
GGTGCTGCTTACTTGTATTCCTCTAAGAAGCCCAAAGGGGCAAGGATAGT
CAGGGTGAAGAGGTTATTAAACCATATACCCCAACCACATTGGATTCTGA
TGTTGGTCATTTTGAATTGGTTATTAAGATGTACCCCCAAGGAAGGATGT
CACACCATTTCCGTGAGATGCGTGTTGGTGATTATCTTGCCGTGAAGGGA
CCCAAGGGTCGATTCAGGTATCAACCTGGCCAGGTCAGAGCATTTGGGAT
GACTGCAGGAGGTTCTGGCATCACTCCAATGTTCCAAGTTACTAGAGCCA
TATTAGAGAACCCAAATGACAAGACAAAGGTGCACCTCATTTATGCCAAT
GTTACATATGAGGACATTCTTTTAAAGGAAGAATTGGATGGATTTGCGGC
GAAGTACCCTGATCAATTCACAATCTACTATGTGTTGAATCAGCCTCCTG
A
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