FC929955

Overview
NameFC929955
Unique NameFC929955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: MCR1_ASHGO (NADH-cytochrome b5 reductase 2 OS=Ashbya gossypii GN=MCR1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 56/132 (42.42%), Postives = 84/132 (63.64%), Query Frame = 1
Query:  301 QGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP 696
            +G  VI+PYTP + +   G F+LVIK Y  G+ + H   ++  D +  KGP  ++R+ P    +  +   G+GITP+FQ+   I ENP D TKVHL+Y N T +DILL++EL+  A+KYPDQ  + Y +++P
Sbjct:  104 KGSNVIRPYTPVSDNMARGMFQLVIKHYDGGKFTTHLFGLKENDTVEFKGPIQKWRWDPNMFDSIVLMGAGTGITPLFQMMHHIAENPTDNTKVHLLYGNKTPQDILLRKELEELASKYPDQVKVTYFVDKP 235          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R1_RAT (NADH-cytochrome b5 reductase 1 OS=Rattus norvegicus GN=Cyb5r1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 62/157 (39.49%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQG---------RMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            G +VI+PYTP T D D G+ +LVIK+Y +G         +MS +   +++GD +  +GP        KG F  QP +         +  GM AGG+GITPM Q+ RAIL+ P D T+  L++AN T +DI+L+E+L+   A+YP +F +++ L+ PP
Sbjct:   91 GSQVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFSEGGKMSQYLDSLKIGDVVEFRGPSGLLSYAGKGNFNIQPNKKSPPELRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQTEKDIILREDLEELQAQYPIRFKLWFTLDYPP 247          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R1_MOUSE (NADH-cytochrome b5 reductase 1 OS=Mus musculus GN=Cyb5r1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQG---------RMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            G  VI+PYTP T D D G+ +LVIK+Y +G         +MS +   +++GD +  +GP        KG F  QP +         +  GM AGG+GITPM Q+ RAIL+ P D T+  L++AN T  DI+L+E+L+   A+YP++F +++ L+ PP
Sbjct:   91 GSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDMVEFRGPSGLLSYAGKGNFNIQPNKKSPPELRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQTERDIILREDLEELQAQYPNRFKLWFTLDSPP 247          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA3_MAIZE (Nitrate reductase [NADH] 3 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 61/150 (40.67%), Postives = 96/150 (64.00%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAIL-ENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ 693
            G+  ++ YTPT+   +VGHF+L++K+Y +         GRM+ +   + VG ++ VKGP G   Y          +P +     M AGGSGITP++QV +A+L + P DKT++HL+YAN T +DILL+ ELD +AA+YP++  ++YV++Q
Sbjct:  677 GKLCMRAYTPTSSVDEVGHFDLLVKVYFRNENTKFPDGGRMTQYLDSLPVGAHVDVKGPLGHVEYVGRGGFVIDGKPRKAGRLAMVAGGSGITPIYQVIQAVLRDQPEDKTEMHLVYANRTEDDILLRAELDRWAAEYPERLKVWYVVSQ 826          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA1_MAIZE (Nitrate reductase [NADH] (Fragment) OS=Zea mays PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 58/151 (38.41%), Postives = 94/151 (62.25%), Query Frame = 1
Query:  301 QGEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAIL-ENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ 693
            +G+  ++ YTPT++  ++GHF+L++K+Y +         G M+ +   + VG Y+ VKGP G   Y          +        M  GGSGITPM+Q+ +A+L + P D T++HL+YAN T +DILL++ELD +AA+YPD+  ++YV++Q
Sbjct:  407 EGKLCMRAYTPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRHASRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQ 557          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: YMM5_YEAST (Uncharacterized oxidoreductase YML125C OS=Saccharomyces cerevisiae GN=YML125C PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.586e-25
Identity = 56/131 (42.75%), Postives = 82/131 (62.60%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP 696
            G++ ++ Y P +   + G+ +LV+K Y  G++S +F  +  GD +  KGP G   Y+P   +  G+ AGGSGITP+ Q+   I+  P D TKV L+YAN T  DILLK+ELD  A KYP  F ++YV++ P
Sbjct:  117 GKQEVRYYNPISSKLESGYLDLVVKAYVDGKVSKYFAGLNSGDTVDFKGPIGTLNYEPNSSKHLGIVAGGSGITPVLQILNEIITVPEDLTKVSLLYANETENDILLKDELDEMAEKYP-HFQVHYVVHYP 246          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R2_XENLA (NADH-cytochrome b5 reductase 2 OS=Xenopus laevis GN=cyb5r2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 60/157 (38.22%), Postives = 93/157 (59.24%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            G  V++ YTP + D   GH +LV+K+Y +         G+MS H   +++G+ +  +GP        KG+F  +P +         +  GM AGG+GITPM Q+ R I ++PND TK +LI+AN T +DILL+ EL+  A  +P+QF ++Y L++PP
Sbjct:   82 GSLVVRAYTPVSSDEVKGHVDLVVKVYYKNVNPKFPDGGKMSQHLDSLKIGETIDFRGPNGLLVYKGKGKFAIRPDKKAEPKIKVAKHVGMLAGGTGITPMLQLIRQITQDPNDNTKCYLIFANQTEDDILLRYELETVAKSHPEQFKLWYTLDRPP 238          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R2_HUMAN (NADH-cytochrome b5 reductase 2 OS=Homo sapiens GN=CYB5R2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 61/156 (39.10%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  307 EEVIKPYTPTTLDSDVGHFELVIKMY-----PQ----GRMSHHFREMRVGDYLAVKGPKGRFRYQ-PGQVRA---------------FGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            E V++ YTP + D D G  +L+IK+Y     PQ    G+M+ +   M++G+ +  +GP+GR  Y  PG +                  GM AGG+GITPM Q+ R I ++P+D+T++ LI+AN T EDIL+++EL+  A  +PDQF ++Y L++PP
Sbjct:   63 ELVVRAYTPVSSDDDRGFVDLIIKIYFKNVHPQYPEGGKMTQYLENMKIGETIFFRGPRGRLFYHGPGNLGIRPDQTSEPKKTLADHLGMIAGGTGITPMLQLIRHITKDPSDRTRMSLIFANQTEEDILVRKELEEIARTHPDQFNLWYTLDRPP 218          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: MCR1_KLULA (NADH-cytochrome b5 reductase 2 OS=Kluyveromyces lactis GN=MCR1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 53/131 (40.46%), Postives = 78/131 (59.54%), Query Frame = 1
Query:  301 QGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ 693
            +G  VI+PYTP + +   G  ELV+K Y  G+ + H   ++  D ++ KGP  ++ ++P    +  +   G+GI P++Q+   I ENP D TK+HL Y N T EDILLK ELD    KYPDQ  I Y +++
Sbjct:   94 KGSNVIRPYTPVSDNGTKGKMELVVKHYENGKFTSHLFGLKENDTVSFKGPITKWEWKPNSYDSITLLGAGTGINPLYQLVHHIAENPEDNTKIHLYYGNKTPEDILLKSELDNLQKKYPDQVKITYFVDK 224          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA_LOTJA (Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 61/147 (41.50%), Postives = 91/147 (61.90%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQG---------RMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVL 687
            G+  ++ YTPT+   +VG+FELV+K+Y +G          MS H   + +G  L VKGP G   Y          +    +   M AGG+GITP++QV +AIL++P D TK++++YAN T +DILL+EELD +A KY D+F ++YV+
Sbjct:  691 GKLCMRAYTPTSGVDEVGYFELVVKVYFKGVHPKFPNGGAMSQHLDSLPIGSDLDVKGPLGHIEYTGRGNFLVHGKHRFAKKLAMLAGGTGITPIYQVAQAILKDPEDHTKMYVVYANRTEDDILLREELDTWAKKYEDRFKVWYVV 837          
The following BLAST results are available for this feature:
BLAST of FC929955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MCR1_ASHGO2.446e-2642.42NADH-cytochrome b5 reductase 2 OS=Ashbya gossypii ... [more]
NB5R1_RAT3.195e-2639.49NADH-cytochrome b5 reductase 1 OS=Rattus norvegicu... [more]
NB5R1_MOUSE4.173e-2639.49NADH-cytochrome b5 reductase 1 OS=Mus musculus GN=... [more]
NIA3_MAIZE7.117e-2640.67Nitrate reductase [NADH] 3 OS=Zea mays PE=3 SV=1[more]
NIA1_MAIZE1.214e-2538.41Nitrate reductase [NADH] (Fragment) OS=Zea mays PE... [more]
YMM5_YEAST1.586e-2542.75Uncharacterized oxidoreductase YML125C OS=Saccharo... [more]
NB5R2_XENLA3.532e-2538.22NADH-cytochrome b5 reductase 2 OS=Xenopus laevis G... [more]
NB5R2_HUMAN3.532e-2539.10NADH-cytochrome b5 reductase 2 OS=Homo sapiens GN=... [more]
MCR1_KLULA4.613e-2540.46NADH-cytochrome b5 reductase 2 OS=Kluyveromyces la... [more]
NIA_LOTJA6.025e-2541.50Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA... [more]

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Properties
Property NameValue
Genbank descriptionC34002C03EF PostHarvC1 Citrus clementina cDNA clone C34002C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929955 ID=FC929955; Name=FC929955; organism=Citrus clementina; type=EST; length=701bp
GAGAGCACCAGAAGATAAGAAATGGAATAAACCGCACACTATTTTCTCTC
CCACCCATTTACTGGTTCCATTTCTTGTTTTGATTTTTGAGTTAAAAATT
TATTCTCTATATACATATATTGATAAATCCGAGGCTTTTAGTTCTTCTAT
TGGTGAGCTTTTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAG
ATGTTCAGCTTCTCGTTGGTGGAGCTGTGGCTGTTTTGGCCATTGCTGTT
GGTGCTGCTTACTTGTATTCCTCTAAGAAGCCCAAAGGGGCAAGGATAGT
CAGGGTGAAGAGGTTATTAAACCATATACCCCAACCACATTGGATTCTGA
TGTTGGTCATTTTGAATTGGTTATTAAGATGTACCCCCAAGGAAGGATGT
CACACCATTTCCGTGAGATGCGTGTTGGTGATTATCTTGCCGTGAAGGGA
CCCAAGGGTCGATTCAGGTATCAACCTGGCCAGGTCAGAGCATTTGGGAT
GACTGCAGGAGGTTCTGGCATCACTCCAATGTTCCAAGTTACTAGAGCCA
TATTAGAGAACCCAAATGACAAGACAAAGGTGCACCTCATTTATGCCAAT
GTTACATATGAGGACATTCTTTTAAAGGAAGAATTGGATGGATTTGCGGC
GAAGTACCCTGATCAATTCACAATCTACTATGTGTTGAATCAGCCTCCTG
A
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