FC929955

Overview
NameFC929955
Unique NameFC929955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: MCR1B_VANPO (NADH-cytochrome b5 reductase 2-B OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=MCR1B PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 55/127 (43.31%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  316 IKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQP 696
            I+PYTP +L    G  E VIK  P G MS H   ++  D ++  GP  ++ ++  +  +  +   GSGITP++Q+  +IL NP DKTK++L YAN T +DILLK+ELD F  K+ D+  I+Y L+QP
Sbjct:  105 IRPYTPVSLPETQGVIEFVIKHVPNGGMSSHMFSLKPNDTVSFTGPIVKYEWKQNKFDSVTLLGAGSGITPLYQLMGSILSNPEDKTKINLFYANKTSDDILLKKELDEFQQKFSDRVKIHYYLSQP 231          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA2_TOBAC (Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 61/143 (42.66%), Postives = 91/143 (63.64%), Query Frame = 1
Query:  316 IKPYTPTTLDSDVGHFELVIKMYPQG---------RMSHHFREMRVGDYLAVKGPKGRFRYQ-PGQVRAFG---------MTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVL 687
            ++ YTPT+   +VG+FELV+K+Y +G         +MS +   M +G +L VKGP G   YQ  G     G         M AGG+GITP++QV +AIL++P D T+++++YAN T +DILLKEELD +A K P++  ++YV+
Sbjct:  698 MRAYTPTSTIDEVGYFELVVKIYFKGIHPKFPNGGQMSQYLDSMPLGSFLDVKGPLGHIEYQGKGNFLVHGKQKFAKKLAMIAGGTGITPVYQVMQAILKDPEDDTEMYVVYANRTEDDILLKEELDSWAEKIPERVKVWYVV 840          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA1_TOBAC (Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 60/143 (41.96%), Postives = 92/143 (64.34%), Query Frame = 1
Query:  316 IKPYTPTTLDSDVGHFELVIKMYPQG---------RMSHHFREMRVGDYLAVKGPKGRFRYQ-PGQVRAFG---------MTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVL 687
            ++ YTPT+   +VG+FELV+K+Y +G         +MS +   +++G +L VKGP G   YQ  G     G         M AGG+GITP++QV +AIL++P D T+++++YAN T +DILLKEELD +A K P++  ++YV+
Sbjct:  698 MRAYTPTSTIDEVGYFELVVKIYFKGIHPKFPNGGQMSQYLDSLQLGSFLDVKGPLGHIEYQGKGNFLVHGKQKFAKKLAMIAGGTGITPVYQVMQAILKDPEDDTEMYVVYANRTEDDILLKEELDSWAEKIPERVKVWYVV 840          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA1_HORVU (Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 59/151 (39.07%), Postives = 96/151 (63.58%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGD-YLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAIL-ENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ 693
            G+  ++ YTPT++  ++G FEL++K+Y +         G M+ +   ++VG  Y+ VKGP G   Y          +  + R   M  GGSGITPM+QV +A+L + P D+T++HL+YAN + +DILL++ELD +AA+YPD+  ++YV++Q
Sbjct:  701 GKLCMRAYTPTSMVDEIGQFELLVKVYFRDEHPKFPNGGLMTQYLESLQVGSSYIDVKGPLGHVEYTGRGNFVINGKQRRARRLAMICGGSGITPMYQVIQAVLRDQPEDETEMHLVYANRSEDDILLRDELDRWAAEYPDRLKVWYVIDQ 851          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R2_XENTR (NADH-cytochrome b5 reductase 2 OS=Xenopus tropicalis GN=cyb5r2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 59/157 (37.58%), Postives = 92/157 (58.60%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            G  V++ YTP + D   GH +L++K+Y +         G+MS H   +++G+ +  +GP        KG+F  +P +         +  GM AGG+GITPM Q+ R I ++PND TK  LI+AN T +DILL+ EL+  A  +P+QF ++Y L++PP
Sbjct:   90 GSLVVRAYTPVSSDEVKGHVDLIVKVYYKNVHPKFPEGGKMSQHLDSLKIGETIDFRGPNGLLVYKEKGKFAIRPDKKSEPKLKVAKHVGMLAGGTGITPMLQLIRQITQDPNDNTKCSLIFANQTEDDILLRYELETVAKSHPEQFKLWYTLDRPP 246          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: MCR1_CANGA (NADH-cytochrome b5 reductase 2 OS=Candida glabrata GN=MCR1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 53/131 (40.46%), Postives = 83/131 (63.36%), Query Frame = 1
Query:  301 QGEEVIKPYTPTTLDSDVGHFELVIKMYPQGRMSHHFREMRVGDYLAVKGPKGRFRYQPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ 693
            +G  VI+PYTP +  S+ G+ E VIK Y  G+M+ H  +++  D LA +GP  +++++P       +  GG+GITP++Q+   I +N  DKTK++L Y + T  DILLK+ELD    KYP+Q  I Y +++
Sbjct:   95 KGNPVIRPYTPVSDLSEKGYIEFVIKHYEGGKMTDHLFQLKPKDTLAFQGPIPKWQWKPNSFDTITLLGGGTGITPLYQLVHHITQNKEDKTKINLFYGSKTPSDILLKKELDDLQKKYPEQLNIQYFVDK 225          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA2_ARATH (Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 59/143 (41.26%), Postives = 91/143 (63.64%), Query Frame = 1
Query:  316 IKPYTPTTLDSDVGHFELVIKMY-----PQ----GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVL 687
            ++ YTP++    VG+FELV+K+Y     P+    G MS +   + +G  L +KGP G   Y          +P       M AGG+GITP++Q+ +AIL++P D+T++++IYAN T EDILL+EELDG+A +YPD+  ++YV+
Sbjct:  711 LRAYTPSSTVDVVGYFELVVKIYFGGVHPRFPNGGLMSQYLDSLPIGSTLEIKGPLGHVEYLGKGSFTVHGKPKFADKLAMLAGGTGITPVYQIIQAILKDPEDETEMYVIYANRTEEDILLREELDGWAEQYPDRLKVWYVV 853          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R3_HUMAN (NADH-cytochrome b5 reductase 3 OS=Homo sapiens GN=CYB5R3 PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 61/157 (38.85%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            G  V++PYTP + D D G  +LVIK+Y +         G+MS +   M++GD +  +GP        KG+F  +P +        V++ GM AGG+GITPM QV RAI+++P+D T  HL++AN T +DILL+ EL+    K+  +F ++Y L++ P
Sbjct:   87 GNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAP 243          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA_PICAN (Nitrate reductase [NADPH] OS=Pichia angusta GN=YNR1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 62/152 (40.79%), Postives = 90/152 (59.21%), Query Frame = 1
Query:  286 RGKDSQGEEVIKPYTPTTLDSDVGHFELVIKMYPQGR-------MSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLN 690
            R KDS G+ V++ YTP + +S  G  E++IK+Y   R       M++    ++VG+ + VKGP G F Y          +P Q++ F M +GGSGITP +QV +AI  +P D+T V L + N   +DILL+EELD    KYP+QF + Y L+
Sbjct:  644 RLKDSSGKYVMRAYTPKSSNSLRGRLEILIKVYFPNREYPNGGIMTNLIENLQVGNQIEVKGPVGEFEYVKCGHCSFNNKPYQMKHFVMISGGSGITPTYQVLQAIFSDPEDRTSVQLFFGNKKVDDILLREELDHIQEKYPEQFKVDYSLS 795          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA_PETHY (Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 57/143 (39.86%), Postives = 91/143 (63.64%), Query Frame = 1
Query:  316 IKPYTPTTLDSDVGHFELVIKMYPQG---------RMSHHFREMRVGDYLAVKGPKGRFRYQPGQ----------VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVL 687
            ++ YTPT+   +VG+FELV+K+Y +G         +MS +   + +G ++ VKGP G   YQ              +   M AGG+GITP++QV +AIL++P D+T++H++YAN T +DILLK+ELD +A K P++  ++YV+
Sbjct:  703 MRAYTPTSTVDEVGYFELVVKIYFKGIVPKFPNGGQMSQYLDSLPLGAFVDVKGPLGHIEYQGRGNFLVHGKRKFAKKLAMLAGGTGITPVYQVMQAILKDPEDETEMHVVYANRTEDDILLKDELDSWAVKLPERVKVWYVV 845          
The following BLAST results are available for this feature:
BLAST of FC929955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MCR1B_VANPO6.025e-2543.31NADH-cytochrome b5 reductase 2-B OS=Vanderwaltozym... [more]
NIA2_TOBAC1.028e-2442.66Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN... [more]
NIA1_TOBAC1.028e-2441.96Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN... [more]
NIA1_HORVU1.028e-2439.07Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 S... [more]
NB5R2_XENTR1.028e-2437.58NADH-cytochrome b5 reductase 2 OS=Xenopus tropical... [more]
MCR1_CANGA1.342e-2440.46NADH-cytochrome b5 reductase 2 OS=Candida glabrata... [more]
NIA2_ARATH1.753e-2441.26Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana... [more]
NB5R3_HUMAN1.753e-2438.85NADH-cytochrome b5 reductase 3 OS=Homo sapiens GN=... [more]
NIA_PICAN2.290e-2440.79Nitrate reductase [NADPH] OS=Pichia angusta GN=YNR... [more]
NIA_PETHY2.290e-2439.86Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA... [more]

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Properties
Property NameValue
Genbank descriptionC34002C03EF PostHarvC1 Citrus clementina cDNA clone C34002C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929955 ID=FC929955; Name=FC929955; organism=Citrus clementina; type=EST; length=701bp
GAGAGCACCAGAAGATAAGAAATGGAATAAACCGCACACTATTTTCTCTC
CCACCCATTTACTGGTTCCATTTCTTGTTTTGATTTTTGAGTTAAAAATT
TATTCTCTATATACATATATTGATAAATCCGAGGCTTTTAGTTCTTCTAT
TGGTGAGCTTTTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAG
ATGTTCAGCTTCTCGTTGGTGGAGCTGTGGCTGTTTTGGCCATTGCTGTT
GGTGCTGCTTACTTGTATTCCTCTAAGAAGCCCAAAGGGGCAAGGATAGT
CAGGGTGAAGAGGTTATTAAACCATATACCCCAACCACATTGGATTCTGA
TGTTGGTCATTTTGAATTGGTTATTAAGATGTACCCCCAAGGAAGGATGT
CACACCATTTCCGTGAGATGCGTGTTGGTGATTATCTTGCCGTGAAGGGA
CCCAAGGGTCGATTCAGGTATCAACCTGGCCAGGTCAGAGCATTTGGGAT
GACTGCAGGAGGTTCTGGCATCACTCCAATGTTCCAAGTTACTAGAGCCA
TATTAGAGAACCCAAATGACAAGACAAAGGTGCACCTCATTTATGCCAAT
GTTACATATGAGGACATTCTTTTAAAGGAAGAATTGGATGGATTTGCGGC
GAAGTACCCTGATCAATTCACAATCTACTATGTGTTGAATCAGCCTCCTG
A
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