FC929955

Overview
NameFC929955
Unique NameFC929955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA_SPIOL (Nitrate reductase [NADH] OS=Spinacia oleracea GN=NIA PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 56/145 (38.62%), Postives = 90/145 (62.07%), Query Frame = 1
Query:  316 IKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ 693
            ++ YTP++    VG+F+LV+K+Y +         G MS H   + +G  + VKGP G   Y          +P   +   M +GG+GITP++QV +AIL++P DKT++H++YAN T EDILL+EELD +A ++ D+  ++YV+ +
Sbjct:  721 MRAYTPSSTIDVVGYFDLVVKVYFKDVHPRFPNGGVMSQHLDSLSLGSIVDVKGPLGHIEYLGKGNFTVHGKPKFAKKLAMISGGTGITPIYQVMQAILKDPEDKTEMHVVYANRTEEDILLREELDKWADEFRDRVKVWYVVEK 865          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R2_MOUSE (NADH-cytochrome b5 reductase 2 OS=Mus musculus GN=Cyb5r2 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23
Identity = 60/156 (38.46%), Postives = 92/156 (58.97%), Query Frame = 1
Query:  307 EEVIKPYTPTTLDSDVGHFELVIKMY--------PQG-RMSHHFREMRVGDYLAVKGPKGRFRY-QPGQ---------------VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            E VI+ YTP + D D G  +L+IK+Y        P+G +M+ +   M++GD +  +GP GR  Y +PG                V   GM AGG+GITPM Q+ R I ++ +D+T++ L++AN T EDILL++EL+  A  +  QF ++Y L++PP
Sbjct:   63 ELVIRAYTPVSSDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQYLENMKIGDTILFRGPTGRLFYNEPGTLLIKANKTSEPEKKLVHHLGMIAGGTGITPMLQLIRHITKDTSDETRMSLLFANQTEEDILLRKELEEVATTHHKQFNLWYTLDRPP 218          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA1_ARATH (Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana GN=NIA1 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 52/143 (36.36%), Postives = 89/143 (62.24%), Query Frame = 1
Query:  316 IKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRYQ----------PGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVL 687
            ++ YTPT+    VGH +LV+K+Y +         G MS H   + +G  + +KGP G   Y+          P   +   M AGG+GITP++Q+ ++IL +P D+T+++++YAN T +DIL++EEL+G+A+K+ ++  I+YV+
Sbjct:  711 LRAYTPTSAIDAVGHIDLVVKVYFKDVHPRFPNGGLMSQHLDSLPIGSMIDIKGPLGHIEYKGKGNFLVSGKPKFAKKLAMLAGGTGITPIYQIIQSILSDPEDETEMYVVYANRTEDDILVREELEGWASKHKERLKIWYVV 853          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R3_RAT (NADH-cytochrome b5 reductase 3 OS=Rattus norvegicus GN=Cyb5r3 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 57/157 (36.31%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRYQPG----------------QVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            G  VI+PYTP + D D G  +LV+K+Y +         G+MS +   M +GD +  +GP G   YQ                   V++ GM AGG+GITPM QV RA+L++PND T  +L++AN + +DILL+ EL+    ++  +F ++Y +++ P
Sbjct:   87 GNLVIRPYTPVSSDDDKGFVDLVVKVYFKDTHPKFPAGGKMSQYLENMNIGDTIEFRGPNGLLVYQGKGKFAIRADKKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQSEKDILLRPELEELRNEHSSRFKLWYTVDKAP 243          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R3_MOUSE (NADH-cytochrome b5 reductase 3 OS=Mus musculus GN=Cyb5r3 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 57/157 (36.31%), Postives = 90/157 (57.32%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRYQPG----------------QVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            G  VI+PYTP + D D G  +LV+K+Y +         G+MS +   M++GD +  +GP G   YQ                   V++ GM AGG+GITPM QV RA+L++PND T  +L++AN + +DILL+ EL+    ++  +F ++Y +++ P
Sbjct:   87 GNLVIRPYTPVSSDDDKGFVDLVVKVYFKDTHPKFPAGGKMSQYLENMKIGDTIEFRGPNGLLVYQGKGKFAIRADKKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQSEKDILLRPELEELRNEHSARFKLWYTVDKAP 243          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA2_BRANA (Nitrate reductase [NADH], clone PBNBR1412 OS=Brassica napus GN=NIA2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 54/143 (37.76%), Postives = 86/143 (60.14%), Query Frame = 1
Query:  316 IKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVL 687
            ++ YTPT+    VGH +LV+K+Y +         G MS H   + +G  L +KGP G   Y          +P   +   M AGG GITP++QV ++IL +P D+T++ ++YAN T +DIL++EEL+G+A K+ D+  ++YV+
Sbjct:  705 LRAYTPTSTVDAVGHIDLVVKVYFKDVHPRFPNGGLMSQHLDSLPIGSVLNIKGPLGHIEYLGKGNFMVTGKPKFAKKLAMLAGGPGITPIYQVIQSILSDPEDETEMFVVYANRTEDDILVREELEGWANKHKDRLKVWYVV 847          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA1_PHAVU (Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris GN=NIA1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 58/143 (40.56%), Postives = 89/143 (62.24%), Query Frame = 1
Query:  316 IKPYTPTTLDSDVGHFELVIKMYPQGR---------MSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVL 687
            ++ YTPT+   +VG F+LV+K+Y +G          MS H   + +G  + VKGP G   Y          +P   +   M AGG+GITP++QV +AIL++P D+T+++++YAN T +DILLKEELD +A K+ D+  ++YVL
Sbjct:  676 MRAYTPTSSVDEVGFFDLVVKVYFKGVHPNFPNGGIMSQHLDSLPIGSVVDVKGPLGHIEYTGRGNFLVHGKPRFAKRLTMLAGGTGITPIYQVVQAILKDPEDRTEMYVVYANRTEDDILLKEELDEWAKKH-DRLKVWYVL 817          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R2_CHICK (NADH-cytochrome b5 reductase 2 OS=Gallus gallus GN=CYB5R2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 57/157 (36.31%), Postives = 87/157 (55.41%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            G  VI+ YTP + D   G+ +L+IK+Y +         G+MS +   M++GD +  +GP G   Y                Q    +  G+ AGG+GITPM Q+ R I  +P D TK +L++AN T +DILL+ EL+  A ++PDQ  ++Y L++PP
Sbjct:   90 GNLVIRAYTPVSSDETKGYVDLIIKVYYKNVNPKFPEGGKMSQYLDSMKIGDVIDFRGPNGLLVYKGSGTFMIKPDKKSEAQRKFAKHLGVIAGGTGITPMLQLIRHITSDPKDSTKCYLLFANQTEKDILLRAELEDIAKRHPDQVRLWYTLDRPP 246          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA2_PHAVU (Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris GN=NIA2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 56/147 (38.10%), Postives = 90/147 (61.22%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVL 687
            G+  ++ YTPT+   +VG F+L+IK+Y +         G MS +   + +G  L VKGP G   Y          +    +   M AGG+GITP++QV +AIL++P D T++H++YAN T +DILL+EELD +A ++ ++F ++YV+
Sbjct:  681 GKLCMRAYTPTSSVEEVGFFDLLIKVYFKDVHPKFPNGGLMSQYLESLSIGSMLDVKGPLGHIEYTGRGNFTVNGKSRFAKRLAMLAGGTGITPIYQVAQAILKDPEDLTEMHVVYANRTEDDILLREELDTWAKEHCERFKVWYVV 827          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA2_HORVU (Nitrate reductase [NADH] (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 56/151 (37.09%), Postives = 93/151 (61.59%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDY-LAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAIL-ENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ 693
            G+  ++ YTPT++  ++G FEL++K+Y +         G M+ +   ++VG   + VKGP G   Y          +  + R   M  G SGITPM+QV +A+L + P D+T++HL+YAN + +DILL++ELD +A +YPD+  ++YV++Q
Sbjct:  698 GKLCMRAYTPTSMVDEIGQFELLVKVYFRDEHPKFPNGGLMTQYLESLQVGSSSIDVKGPLGHVEYTGRGNFVINGKQRRARRLAMICGSSGITPMYQVIQAVLRDQPEDETEMHLVYANRSEDDILLRDELDRWATEYPDRLKVWYVIDQ 848          
The following BLAST results are available for this feature:
BLAST of FC929955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
NIA_SPIOL4.318e-2338.62Nitrate reductase [NADH] OS=Spinacia oleracea GN=N... [more]
NB5R2_MOUSE4.318e-2338.46NADH-cytochrome b5 reductase 2 OS=Mus musculus GN=... [more]
NIA1_ARATH7.365e-2336.36Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana... [more]
NB5R3_RAT9.619e-2336.31NADH-cytochrome b5 reductase 3 OS=Rattus norvegicu... [more]
NB5R3_MOUSE9.619e-2336.31NADH-cytochrome b5 reductase 3 OS=Mus musculus GN=... [more]
NIA2_BRANA1.256e-2237.76Nitrate reductase [NADH], clone PBNBR1412 OS=Brass... [more]
NIA1_PHAVU1.256e-2240.56Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris G... [more]
NB5R2_CHICK1.256e-2236.31NADH-cytochrome b5 reductase 2 OS=Gallus gallus GN... [more]
NIA2_PHAVU1.641e-2238.10Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris G... [more]
NIA2_HORVU1.641e-2237.09Nitrate reductase [NADH] (Fragment) OS=Hordeum vul... [more]

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Properties
Property NameValue
Genbank descriptionC34002C03EF PostHarvC1 Citrus clementina cDNA clone C34002C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929955 ID=FC929955; Name=FC929955; organism=Citrus clementina; type=EST; length=701bp
GAGAGCACCAGAAGATAAGAAATGGAATAAACCGCACACTATTTTCTCTC
CCACCCATTTACTGGTTCCATTTCTTGTTTTGATTTTTGAGTTAAAAATT
TATTCTCTATATACATATATTGATAAATCCGAGGCTTTTAGTTCTTCTAT
TGGTGAGCTTTTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAG
ATGTTCAGCTTCTCGTTGGTGGAGCTGTGGCTGTTTTGGCCATTGCTGTT
GGTGCTGCTTACTTGTATTCCTCTAAGAAGCCCAAAGGGGCAAGGATAGT
CAGGGTGAAGAGGTTATTAAACCATATACCCCAACCACATTGGATTCTGA
TGTTGGTCATTTTGAATTGGTTATTAAGATGTACCCCCAAGGAAGGATGT
CACACCATTTCCGTGAGATGCGTGTTGGTGATTATCTTGCCGTGAAGGGA
CCCAAGGGTCGATTCAGGTATCAACCTGGCCAGGTCAGAGCATTTGGGAT
GACTGCAGGAGGTTCTGGCATCACTCCAATGTTCCAAGTTACTAGAGCCA
TATTAGAGAACCCAAATGACAAGACAAAGGTGCACCTCATTTATGCCAAT
GTTACATATGAGGACATTCTTTTAAAGGAAGAATTGGATGGATTTGCGGC
GAAGTACCCTGATCAATTCACAATCTACTATGTGTTGAATCAGCCTCCTG
A
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