FC929956

Overview
NameFC929956
Unique NameFC929956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSEPW (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain W619) GN=sthA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 55/170 (32.35%), Postives = 78/170 (45.88%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     R+  S   L+L+  P++L+V GAG
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDLFFGTGSFADEQTVEVVCPNGVVEKLNAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSEPG (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain GB-1) GN=sthA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 55/170 (32.35%), Postives = 78/170 (45.88%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     R+  S   L+L+  P++L+V GAG
Sbjct:   20 AAMNAAKAGRKVAMVDDRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFADEQTVEVVCPNGVVEKLNAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSEPF (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=sthA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 55/170 (32.35%), Postives = 77/170 (45.29%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     + V    G    +  K+IIIATGS       I     RI  S   L+L   P++L+V GAG
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFADEQTIEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHPRIYDSDTILSLGHTPRKLIVYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSEFS (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens (strain SBW25) GN=sthA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 55/170 (32.35%), Postives = 77/170 (45.29%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     RI  S   L+L   P++L++ GAG
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDLFFGTGSFADEQTVEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHPRIYDSDTILSLGHTPRKLIIYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSEFL (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens GN=sthA PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 55/170 (32.35%), Postives = 77/170 (45.29%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     RI  S   L+L   P++L++ GAG
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDLFFGTGSFADEQTVEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFHHPRIYDSDTILSLGHTPRKLIIYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_MARMS (Soluble pyridine nucleotide transhydrogenase OS=Marinomonas sp. (strain MWYL1) GN=sthA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 47/169 (27.81%), Postives = 85/169 (50.30%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ AA+ G +   IE    +GG+C ++G IPSKAL H+     + + +F ++ +     E      P ++ + ++ +     G    + +N++    G G+F   + + V+T E G  +++ K ++IATGS       I     RI  S   L+L+  P+ L++ GAG
Sbjct:   20 AAMSAAKAGKRVAVIEASSQVGGSCTHLGTIPSKALRHAV----KEIIAFNTNPMFRDIGEPRWFSFPKVLDRANRVIDKQVMGRTEYYARNRIDIYFGRGKFKDANTIEVNTYEKGPELLEAKKVVIATGSRPYRPANIDFSHPRIYCSDTILSLSHTPRSLIIYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: GSHR_PSEAE (Glutathione reductase OS=Pseudomonas aeruginosa GN=gor PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 48/169 (28.40%), Postives = 81/169 (47.93%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            AA  AA  G +    E R  LGGTC+NVGC+P K L++ +H + E      ++G      + D   ++  K++ +  L      L   + VT ++G+   +    V VD           K+I++ATG    V  +PG    ++  ++S  A  L  +P+ ++V+G GY
Sbjct:   19 AARFAAGFGARVAVAESR-YLGGTCVNVGCVPKKLLVYGAH-FSEDFEQARAYGWSAGEAQFDWATLIGNKNREIQRLNGIYRNLLVNSGVTLLEGHARLLDAHSVEVD-----GQRFSAKHILVATGGWPQVPDIPG----KEHAITSNEAFFLERLPRRVLVVGGGY 176          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSEE4 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas entomophila (strain L48) GN=sthA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 55/170 (32.35%), Postives = 78/170 (45.88%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     R+  S   L+L+  P++L+V GAG
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFADEQTVEVVCPNGVVEKLVAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSEPK (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain KT2440) GN=sthA PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 54/170 (31.76%), Postives = 78/170 (45.88%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K ++       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     R+  S   L+L+  P++L+V GAG
Sbjct:   20 AAMNAAKAGRKVAMVDDRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVIAKQVASRTGYYARNRVDVFVGTGSFADEQTVEVVCPNGVVEKLNAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSEP1 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=sthA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 54/170 (31.76%), Postives = 78/170 (45.88%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K ++       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     R+  S   L+L+  P++L+V GAG
Sbjct:   20 AAMNAAKAGRKVAMVDDRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVIAKQVASRTGYYARNRVDVFVGTGSFADEQTVEVVCPNGVVEKLNAKHIIIATGSRPYRPADIDFHHPRVYDSDTILSLSHTPRKLIVYGAG 184          
The following BLAST results are available for this feature:
BLAST of FC929956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
STHA_PSEPW1.444e-1332.35Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEPG1.886e-1332.35Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEPF1.886e-1332.35Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEFS1.886e-1332.35Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEFL1.886e-1332.35Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_MARMS1.886e-1327.81Soluble pyridine nucleotide transhydrogenase OS=Ma... [more]
GSHR_PSEAE1.886e-1328.40Glutathione reductase OS=Pseudomonas aeruginosa GN... [more]
STHA_PSEE42.463e-1332.35Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEPK3.217e-1331.76Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEP13.217e-1331.76Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]

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Properties
Property NameValue
Genbank descriptionC34002C04EF PostHarvC1 Citrus clementina cDNA clone C34002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929956 ID=FC929956; Name=FC929956; organism=Citrus clementina; type=EST; length=718bp
AAACCAACAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGG
TGATGGCAAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTC
TCGAACTCGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAG
GGGCTTCGCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTG
GACCTGGTGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAG
ACCACGTGCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGT
CGGATGCATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATG
AAGCCATGCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAA
GTTGATTTGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCT
TACAAGAGGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGA
AAGGATATGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATT
GAAGGTGGAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGG
TTCTGACGTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTG
TGTCATCCACTGGAGCTTTAGCATTGAATGAAGTTCCTAAAGAACTCGTG
GTCATTGGGGCAGGCTAC
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