FC929956

Overview
NameFC929956
Unique NameFC929956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_VIBCH (Soluble pyridine nucleotide transhydrogenase OS=Vibrio cholerae GN=sthA PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 46/166 (27.71%), Postives = 71/166 (42.77%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+   + G     IEK  ++GG C + G IPSKAL H+     E  +S        SS+      +++     +   TR  +G + +N+ T + G   FI    V+V   +G          +IATGS       +     RI  S   L L   P+ +++ GAG
Sbjct:   21 AAMGLTKGGKNVAIIEKESSVGGGCTHWGTIPSKALRHAVSRIIE-FNSNPLFCKNNSSIHATFSTILSHAKSVIDKQTRLRQGFYDRNQCTLIFGAAHFIDAHTVAVKKADGSIDTYSADKFVIATGSRPYHPKDVDFGHPRIYDSDSILNLEHDPRHIIIYGAG 185          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_VIBC3 (Soluble pyridine nucleotide transhydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=sthA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 46/166 (27.71%), Postives = 71/166 (42.77%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+   + G     IEK  ++GG C + G IPSKAL H+     E  +S        SS+      +++     +   TR  +G + +N+ T + G   FI    V+V   +G          +IATGS       +     RI  S   L L   P+ +++ GAG
Sbjct:   21 AAMGLTKGGKNVAIIEKESSVGGGCTHWGTIPSKALRHAVSRIIE-FNSNPLFCKNNSSIHATFSTILSHAKSVIDKQTRLRQGFYDRNQCTLIFGAAHFIDAHTVAVKKADGSIDTYSADKFVIATGSRPYHPKDVDFGHPRIYDSDSILNLEHDPRHIIIYGAG 185          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_ERWCT (Soluble pyridine nucleotide transhydrogenase OS=Erwinia carotovora subsp. atroseptica GN=sthA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 48/170 (28.24%), Postives = 79/170 (46.47%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHE----AMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+  A+ G K   IE+   +GG C + G IPSKAL H+     E     ++S  S  ++ S  ++     +   D  +   TR  +G +++N+     G   FI    ++V   +  +  +   NIIIATGS       +  +  RI  S   L L+  P+ +++ GAG
Sbjct:   23 AAMGLAKHGAKIAVIERHYNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDNSRIIRSSFSDI-----LRHADSVIGQQTRMRQGFYERNQCELFSGEASFIDAHTIAVHYPDNTHETLTAANIIIATGSRPYHPAEVDFNHPRIYDSDSILQLDHEPQHVIIYGAG 187          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_COLP3 (Soluble pyridine nucleotide transhydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=sthA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 44/166 (26.51%), Postives = 73/166 (43.98%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+  A+   K   IE+   +GG C + G IPSKAL  S     E  +S           ++    +++     +        G + +N+V +++G   FI    +S+   +G    +  K I+IATGS       I  D  R+  S   L+L   P+ +++ GAG
Sbjct:   21 AAMNLAKRQKKVAIIERYHQVGGGCTHWGTIPSKALRQSVSRLIE-YNSNPLFNQNEQVKQLTFQDILSHASAVIQKQVSLRSGFYNRNRVEHIQGQASFIDAHTISISHPDGSVEKISAKQIMIATGSRPYRPDDIDFDHPRVYDSDSILSLKHAPQHVIIYGAG 185          
The following BLAST results are available for this feature:
BLAST of FC929956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
STHA_VIBCH2.306e-1127.71Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_VIBC32.306e-1127.71Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]
STHA_ERWCT3.011e-1128.24Soluble pyridine nucleotide transhydrogenase OS=Er... [more]
STHA_COLP38.761e-1126.51Soluble pyridine nucleotide transhydrogenase OS=Co... [more]

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Properties
Property NameValue
Genbank descriptionC34002C04EF PostHarvC1 Citrus clementina cDNA clone C34002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929956 ID=FC929956; Name=FC929956; organism=Citrus clementina; type=EST; length=718bp
AAACCAACAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGG
TGATGGCAAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTC
TCGAACTCGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAG
GGGCTTCGCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTG
GACCTGGTGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAG
ACCACGTGCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGT
CGGATGCATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATG
AAGCCATGCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAA
GTTGATTTGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCT
TACAAGAGGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGA
AAGGATATGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATT
GAAGGTGGAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGG
TTCTGACGTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTG
TGTCATCCACTGGAGCTTTAGCATTGAATGAAGTTCCTAAAGAACTCGTG
GTCATTGGGGCAGGCTAC
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