FC929956

Overview
NameFC929956
Unique NameFC929956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_MYCBO (Probable soluble pyridine nucleotide transhydrogenase OS=Mycobacterium bovis GN=sthA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 56/168 (33.33%), Postives = 85/168 (50.60%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA-MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSV-DTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AAI +A+LG     +E+   LGG C+N G IPSK L   + +Y   M+    +G  +   +   PA ++A+    +      +     +N+V  + G+G FI P  + V D      T V G  IIIATG+      G+  DE+R++ S G L L  +P  +VV+GAG
Sbjct:   18 AAIASAKLGKSVAIVERGRMLGGVCVNTGTIPSKTL-REAVLYLTGMNQRELYGASYRVKDRITPADLLARTQHVIGKEVDVVRNQLMRNRVDLIVGHGRFIDPHTILVEDQARREKTTVTGDYIIIATGTRPARPSGVEFDEERVLDSDGILDLKSLPSSMVVVGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_MYCGE (Dihydrolipoyl dehydrogenase OS=Mycoplasma genitalium GN=pdhD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 63/171 (36.84%), Postives = 94/171 (54.97%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEKR--IVSSTGALALNEVPKELVVIGAG 715
            AA  A +  LKT  IEK+   GG CLNVGCIP+K LL  + +    +H+   +G+  +   ++D   ++ QK + V  L  G++ + K  KV  ++G    I  ++V V+     NT     NII+ATGS  +  +LPG    ++   I+ ST ALAL  VPK+ VV+G G
Sbjct:   17 AAEYAGKHKLKTLVIEKQ-YFGGVCLNVGCIPTKTLLKRAKIIDYLVHA-KDYGITINGQAKLDWKQLLKQKQEVVDKLVAGVKTIIKGAKVESIEGEATVIDKNKVQVN-----NTTYTTNNIIVATGSRPRYLTLPGFEKAQQAGFIIDSTQALALEGVPKKFVVVGGG 180          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: MERA_SHIFL (Mercuric reductase OS=Shigella flexneri GN=merA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 58/169 (34.32%), Postives = 90/169 (53.25%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG-IEGLFKKN-KVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKELVVIGA 712
            AA+KA + G + T IE RG +GGTC+NVGC+PSK ++ ++H+ H    S    G+  ++  +   A++AQ+   V  L     EG+ + N  +T + G   F     + V   +GG  VV     +IATG+   V  +PG  + +    +ST AL    +PK L VIG+
Sbjct:  112 AALKAVEQGARVTLIE-RGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATTPTIQRTALLAQQQARVDELRHAKYEGILEGNPAITVLHGSARFKDNRNLIVQLNDGGERVVAFDRCLIATGASPAVPPIPG--LKDTPYWTSTEALVSETIPKRLAVIGS 277          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: MERA_ALCSP (Mercuric reductase OS=Alcaligenes sp. GN=merA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17
Identity = 57/169 (33.73%), Postives = 89/169 (52.66%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG-IEGLFKKN-KVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKELVVIGA 712
            AA+KA + G   T IE RG +GGTC+NVGC+PSK ++ ++H+ H    S    G+  +   +D   ++AQ+   V  L     EG+   N  +T + G   F     ++V   +GG  VV     ++ATG+   V  +PG  + E    +ST AL  + +P+ L VIG+
Sbjct:  111 AALKAVEQGANVTLIE-RGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPAIDRSKLLAQQQARVDELRHAKYEGILDDNPAITVLHGEARFKDDQSLAVRLNDGGERVVAFDRCLVATGASPAVPPIPG--LKESPYWTSTEALVSDTIPERLAVIGS 276          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: MERA_BACCE (Mercuric reductase OS=Bacillus cereus GN=merA PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 62/170 (36.47%), Postives = 93/170 (54.71%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNL-TRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATG--SDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            +AI+A  L  K   IE RG +GGTC+NVGC+PSK LL +  + H A ++    G+  S+  VDL  ++ QK+  V+ +       L        +KG  +F++ + V V+    GN +   K  +IATG  S   ++PG  +DE   ++ST  L L +VP  L VIG+GY
Sbjct:  184 SAIEAVALNAKVAMIE-RGTVGGTCVNVGCVPSKTLLRAGEINHLAKNN-PFVGLHTSASNVDLAPLVKQKNDLVTEMRNEKYVNLIDDYGFELIKGESKFVNENTVEVN----GNQIT-AKRFLIATGASSTAPNIPG--LDEVDYLTSTSLLELKKVPNRLTVIGSGY 344          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: MERA_ENTAG (Mercuric reductase OS=Enterobacter agglomerans GN=merA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 59/169 (34.91%), Postives = 89/169 (52.66%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG-IEGLFKKNK-VTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKELVVIGA 712
            AA+KA + G + T IE RG +GGTC+NVGC+PSK ++  +H+ H    S    G+  +S  +    ++AQ+   V  L     EG+   N  +T + G   F     + V   EGG  VV     ++ATG+   V  +PG  + E    +ST ALA + +P+ L VIG+
Sbjct:  113 AALKAVEQGAQVTLIE-RGTIGGTCVNVGCVPSKIMIRVAHIAHLRRESPFDGGMPPTSPTILRERLLAQQQARVEELRHAKYEGILDGNSAITVLHGEARFKDDQSLIVSLNEGGERVVMFDRCLVATGASPAVPPIPG--LKESPYWTSTEALASDTIPERLAVIGS 278          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: MERA_STRLI (Mercuric reductase OS=Streptomyces lividans GN=merA PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.264e-17
Identity = 57/169 (33.73%), Postives = 88/169 (52.07%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNL-TRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGIT-IDEKRIVSSTGALALNEVPKELVVIGAGY 718
            AAI A   G     +E RG  GGTC+NVGC+PSKALL ++   H A  +    G++ +   +D PA+++ KD  V  L       L  +     V G   F     + V   +GG   V+  + +IATGS   + P I  +D+   ++ST A+ L ++P+ L+++G GY
Sbjct:   22 AAIAARNKGRSVVMVE-RGTTGGTCVNVGCVPSKALLAAAEARHGAQAASRFPGIQATEPALDFPALISGKDTLVGQLRAEKYTDLAAEYGWQIVHGTATFADGPMLEVALNDGGTATVEAAHYLIATGS-APTAPHIDGLDQVDYLTSTTAMELQQLPEHLLILGGGY 188          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: MERA_STAES (Mercuric reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=merA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.264e-17
Identity = 61/170 (35.88%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTR-GIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            AAIKA + G K   +E RG +GGTC+N+GC+PSK +L +  +   A ++    G++ S+   DL  +  QKD  VS + +     L ++     ++G   FI    + V+   G N  +  K+ +IATG+   V  +PG  ++E   ++ST AL L EVP+ L VIG+GY
Sbjct:  100 AAIKANENGAKVAMVE-RGTVGGTCVNIGCVPSKTMLRAGEINGLAQNN-PFTGLQTSTGAADLAQLTEQKDGLVSQMRQEKYIDLIEEYGFDLIRGEASFIDDKTIQVN---GQN--ITSKSFLIATGASPAVPEIPG--MNEVDYLTSTSALELKEVPQRLAVIGSGY 260          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: MERA_STAAU (Mercuric reductase OS=Staphylococcus aureus GN=merA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.264e-17
Identity = 61/170 (35.88%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTR-GIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            AAIKA + G K   +E RG +GGTC+N+GC+PSK +L +  +   A ++    G++ S+   DL  +  QKD  VS + +     L ++     ++G   FI    + V+   G N  +  K+ +IATG+   V  +PG  ++E   ++ST AL L EVP+ L VIG+GY
Sbjct:  100 AAIKANENGAKVAMVE-RGTVGGTCVNIGCVPSKTMLRAGEINGLAQNN-PFTGLQTSTGAADLAQLTEQKDGLVSQMRQEKYIDLIEEYGFDLIRGEASFIDDKTIQVN---GQN--ITSKSFLIATGASPAVPEIPG--MNEVDYLTSTSALELKEVPQRLAVIGSGY 260          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: GSHR_HAEIN (Glutathione reductase OS=Haemophilus influenzae GN=gor PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.264e-17
Identity = 54/165 (32.73%), Postives = 84/165 (50.91%), Query Frame = 2
Query:  227 KAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFA-SHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            +AA  G K   IE +  LGGTC+NVGC+P K + + +H+  EA++++A  +G      + D   ++  +   +S +      +  KN +  + G+G+F+    + V   +G    V   +I+IATG      P I   E  I  S G  AL E+PK   VIGAGY
Sbjct:   22 RAASYGKKCAIIEAKH-LGGTCVNVGCVPKKVMFYGAHI-AEAINNYAPDYGFDVEVKKFDFSKLIESRQAYISRIHTSYNNVLAKNNIDVINGFGKFVDAHTIEVTLADGTKEQVTADHILIATGGR-PYRPNIKGQEYGI-DSDGFFALTELPKRAAVIGAGY 182          
The following BLAST results are available for this feature:
BLAST of FC929956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
STHA_MYCBO3.322e-1833.33Probable soluble pyridine nucleotide transhydrogen... [more]
DLDH_MYCGE7.400e-1836.84Dihydrolipoyl dehydrogenase OS=Mycoplasma genitali... [more]
MERA_SHIFL9.665e-1834.32Mercuric reductase OS=Shigella flexneri GN=merA PE... [more]
MERA_ALCSP1.649e-1733.73Mercuric reductase OS=Alcaligenes sp. GN=merA PE=3... [more]
MERA_BACCE2.153e-1736.47Mercuric reductase OS=Bacillus cereus GN=merA PE=1... [more]
MERA_ENTAG4.796e-1734.91Mercuric reductase OS=Enterobacter agglomerans GN=... [more]
MERA_STRLI6.264e-1733.73Mercuric reductase OS=Streptomyces lividans GN=mer... [more]
MERA_STAES6.264e-1735.88Mercuric reductase OS=Staphylococcus epidermidis (... [more]
MERA_STAAU6.264e-1735.88Mercuric reductase OS=Staphylococcus aureus GN=mer... [more]
GSHR_HAEIN6.264e-1732.73Glutathione reductase OS=Haemophilus influenzae GN... [more]

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Properties
Property NameValue
Genbank descriptionC34002C04EF PostHarvC1 Citrus clementina cDNA clone C34002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929956 ID=FC929956; Name=FC929956; organism=Citrus clementina; type=EST; length=718bp
AAACCAACAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGG
TGATGGCAAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTC
TCGAACTCGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAG
GGGCTTCGCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTG
GACCTGGTGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAG
ACCACGTGCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGT
CGGATGCATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATG
AAGCCATGCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAA
GTTGATTTGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCT
TACAAGAGGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGA
AAGGATATGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATT
GAAGGTGGAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGG
TTCTGACGTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTG
TGTCATCCACTGGAGCTTTAGCATTGAATGAAGTTCCTAAAGAACTCGTG
GTCATTGGGGCAGGCTAC
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