FC929957

Overview
NameFC929957
Unique NameFC929957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929957 vs. ExPASy Swiss-Prot
Match: RAN_MOUSE (GTP-binding nuclear protein Ran OS=Mus musculus GN=Ran PE=1 SV=3)

HSP 1 Score: 317.005 bits (811), Expect = 6.171e-86
Identity = 149/180 (82.78%), Postives = 161/180 (89.44%), Query Frame = 2 
Query:   47 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 586
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 190
[Close]
BLAST of FC929957 vs. ExPASy Swiss-Prot
Match: RAN_MACFA (GTP-binding nuclear protein Ran OS=Macaca fascicularis GN=RAN PE=2 SV=3)

HSP 1 Score: 317.005 bits (811), Expect = 6.171e-86
Identity = 149/180 (82.78%), Postives = 161/180 (89.44%), Query Frame = 2 
Query:   47 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 586
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 190
[Close]
BLAST of FC929957 vs. ExPASy Swiss-Prot
Match: RAN_HUMAN (GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3)

HSP 1 Score: 317.005 bits (811), Expect = 6.171e-86
Identity = 149/180 (82.78%), Postives = 161/180 (89.44%), Query Frame = 2 
Query:   47 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 586
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 190
[Close]
BLAST of FC929957 vs. ExPASy Swiss-Prot
Match: RAN_CHICK (GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 6.171e-86
Identity = 149/180 (82.78%), Postives = 161/180 (89.44%), Query Frame = 2 
Query:   47 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 586
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 190
[Close]
BLAST of FC929957 vs. ExPASy Swiss-Prot
Match: RAN_CANFA (GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1 SV=3)

HSP 1 Score: 317.005 bits (811), Expect = 6.171e-86
Identity = 149/180 (82.78%), Postives = 161/180 (89.44%), Query Frame = 2 
Query:   47 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 586
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 190
[Close]
BLAST of FC929957 vs. ExPASy Swiss-Prot
Match: RAN_BOVIN (GTP-binding nuclear protein Ran OS=Bos taurus GN=RAN PE=2 SV=3)

HSP 1 Score: 317.005 bits (811), Expect = 6.171e-86
Identity = 149/180 (82.78%), Postives = 161/180 (89.44%), Query Frame = 2 
Query:   47 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 586
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 190
[Close]
BLAST of FC929957 vs. ExPASy Swiss-Prot
Match: RAN_XENTR (GTP-binding nuclear protein Ran OS=Xenopus tropicalis GN=ran PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.796e-85
Identity = 148/180 (82.22%), Postives = 160/180 (88.89%), Query Frame = 2 
Query:   47 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 586
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPN  FV  PALAPPEV +D
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVMD 190
[Close]
BLAST of FC929957 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.796e-85
Identity = 147/180 (81.67%), Postives = 161/180 (89.44%), Query Frame = 2 
Query:   47 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 586
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I++  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPE+ +D
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILMD 189
[Close]
BLAST of FC929957 vs. ExPASy Swiss-Prot
Match: RAN_CARAU (GTP-binding nuclear protein Ran OS=Carassius auratus GN=ran PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.345e-85
Identity = 147/180 (81.67%), Postives = 161/180 (89.44%), Query Frame = 2 
Query:   47 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 586
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I++  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FVE  ALAPPE+ +D
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAMD 189
[Close]
BLAST of FC929957 vs. ExPASy Swiss-Prot
Match: GSP1_NEUCR (GTP-binding nuclear protein GSP1/Ran OS=Neurospora crassa GN=gsp-1 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 6.823e-85
Identity = 147/182 (80.77%), Postives = 162/182 (89.01%), Query Frame = 2 
Query:   41 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 586
            P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+I+F  WDTAGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+  L FV +PALAPP   +D
Sbjct:    6 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYMATLGVEVHPLGFSTNFGQIQFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNNALEFVAAPALAPPTAVVD 187
The following BLAST results are available for this feature:
BLAST of FC929957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_MOUSE6.171e-8682.78GTP-binding nuclear protein Ran OS=Mus musculus GN... [more]
RAN_MACFA6.171e-8682.78GTP-binding nuclear protein Ran OS=Macaca fascicul... [more]
RAN_HUMAN6.171e-8682.78GTP-binding nuclear protein Ran OS=Homo sapiens GN... [more]
RAN_CHICK6.171e-8682.78GTP-binding nuclear protein Ran OS=Gallus gallus G... [more]
RAN_CANFA6.171e-8682.78GTP-binding nuclear protein Ran OS=Canis familiari... [more]
RAN_BOVIN6.171e-8682.78GTP-binding nuclear protein Ran OS=Bos taurus GN=R... [more]
RAN_XENTR1.796e-8582.22GTP-binding nuclear protein Ran OS=Xenopus tropica... [more]
RAN_SALSA1.796e-8581.67GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]
RAN_CARAU2.345e-8581.67GTP-binding nuclear protein Ran OS=Carassius aurat... [more]
GSP1_NEUCR6.823e-8580.77GTP-binding nuclear protein GSP1/Ran OS=Neurospora... [more]

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Properties
Property NameValue
Genbank descriptionC34002C05EF PostHarvC1 Citrus clementina cDNA clone C34002C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929957 ID=FC929957; Name=FC929957; organism=Citrus clementina; type=EST; length=704bp
TCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAAGCTTCA
AACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGACTACCTTTGTGAAG
AGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCATTGGTGT
GGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATACGATTCT
ATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGAGATGGA
TACTACATCCATGGGCAATGTGCTATCATCATGTTTGATGTTACTGCCCG
CTTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCAGGGTGT
GTGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGTCGATGTGAAGAAC
AGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCA
GTACTATGAGATCTCAGCCAAGAGCAATTACAACTTTGAGAAGCCTTTTC
TTTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTTGCATTTTGTCGAG
TCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGATTTGGCTGCTCAGCA
ACAACATGAAGCTGAACTTGCTGCTGCTGCTAGTCACCTCTCCCAGATGA
AGATGATGACGCCTTCGAGTGAAAGAGACAATGGATCGTGTGATTATTGG
AGTG
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