FC929962

Overview
NameFC929962
Unique NameFC929962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACDC_BACSU (Probable acyl-CoA dehydrogenase yngJ OS=Bacillus subtilis GN=yngJ PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.249e-25
Identity = 65/166 (39.16%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  160 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 657
            Q   +E V  FA++ IAP A  +DQ+  FP     +K MG   L GI  P+E          + +A+EE+ +A GS GLSY A  +L  + L   G+  QK  +L  L SG  +G+  ++EPNAGSD  G + KA      Y+ING K W TN   A+T++V A T
Sbjct:    9 QQMVREMVKDFAKKEIAPHAEHVDQTGEFPMQT--FKKMGELGLMGIPFPEEYGGSGGDTISYALAVEEVGKACGSTGLSYAAAVSLGASPLYYFGTEEQKQTHLTPLASGTALGSFGLTEPNAGSDAGGTQTKAISNGDEYVINGEKCWITNASYARTVIVTAVT 172          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACDA_BACSU (Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=acdA PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.249e-25
Identity = 63/175 (36.00%), Postives = 100/175 (57.14%), Query Frame = 1
Query:  172 KESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFI 696
            ++ V  FA+  +AP AA+ D+   F  D  L++ M N  L GI  P++          + IA+EE+S+   S G++  AH +LC   L   G+  QK +YL +L  GE +GA A++E  +GSD   MK  A+R+   Y++NG+K++ TNG VA   +V+A TD +  ++  + FI
Sbjct:   13 RKLVRDFAKHEVAPTAAERDEQERF--DRELFREMANLGLTGIPWPEDYGGIGSDYLAYVIAVEELSKVCASTGVTLSAHISLCSWPLFAFGTEEQKTEYLTQLALGEKIGAFALTEAGSGSDAGSMKTTAERIGDDYVLNGSKVFITNGGVADIYIVFAVTDPEKKKKGVTAFI 185          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: FADE_BACSU (Probable acyl-CoA dehydrogenase OS=Bacillus subtilis GN=fadE PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.379e-22
Identity = 65/190 (34.21%), Postives = 90/190 (47.37%), Query Frame = 1
Query:  148 FDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFIEKGMP 711
            F D      ++   +  +++ P    I+ ++ F   V L K  G   L G   P+E            +  E+ SRA GS  LSYGAH  +    +V  GS  QK KYLP L SGE + A A++EP +GSD +G K  A   + G  Y++ G K W TN   A   VVYAK D     +  +  +EK  P
Sbjct:   30 FTDEHKMIAKTTEDYIEQDVLPHIDDIE-NHQFEHSVRLLKKAGELGLLGADVPEEYGGLGLDKISSALITEKFSRA-GSFSLSYGAHVGIGSLPIVFFGSEEQKKKYLPGLASGEKIAAYALTEPGSGSDALGAKTTAVLNEAGTHYVLTGEKQWITNSAFADVFVVYAKVD---GDKFSAFIVEKEFP 214          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADS_PONAB (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=ACADS PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.094e-21
Identity = 58/186 (31.18%), Postives = 90/186 (48.39%), Query Frame = 1
Query:  139 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFI 696
            S+   +T     ++   FA + + P AA++D+ + FP      K MG   L  +  P+E          + IAMEEISR   S G+    +++L +  +++ GS  QK K++    SG+ +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A TD  L  +  S F+
Sbjct:   31 SVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFP--AAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQKWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKGISAFL 214          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADS_BOVIN (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADS PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 58/187 (31.02%), Postives = 95/187 (50.80%), Query Frame = 1
Query:  139 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFI 696
            S+   +T    +++   FA + + P AA++D+ + FP      K MG   L  +  P+E          + IAMEEISR   S G+    +++L +  +++ G+  QK +++    SG+ +G  A+SEP  GSD  G      R DG  ++++G K W TN   A  +VV+A TD  L  +  S F+
Sbjct:   31 SVELPETHQMLRQTCRDFAEKELFPIAAQVDKEHRFP--AAQVKKMGELGLMAMNVPEELSGAGLDYLAYSIAMEEISRGCASTGVIMSVNNSLYLGPILKFGTKEQKQQWVAPFTSGDKIGCFALSEPGNGSD-AGAAATTARADGDSWVLSGTKAWITNAWEASAVVVFASTDRSLHNKGISAFL 214          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADS_PIG (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADS PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 57/186 (30.65%), Postives = 91/186 (48.92%), Query Frame = 1
Query:  139 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFI 696
            S+   +T    +++   FA + + P AA++D+ + FP+     K MG   L  +  P+E          + IAMEEISR   S G+    ++ L +  +++ GS  QK +++    SG+ VG  A+SEP  GSD       A      ++++G K W TN   A   VV+A TD  L  +  S F+
Sbjct:   31 SVELPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQV--KKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNFLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDAGAAATTAQADHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGISAFL 214          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADS_MOUSE (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acads PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.696e-20
Identity = 55/186 (29.57%), Postives = 91/186 (48.92%), Query Frame = 1
Query:  139 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFI 696
            S+   +T    +++   FA + + P AA++D+ + FP      K MG   L  +  P+E          + IA+EEISRA  S G+    +++L +  +++ GS  QK +++    +G+ +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A TD     +  S F+
Sbjct:   31 SVELPETHQMLRQTCRDFAEKELVPIAAQLDREHLFP--TAQVKKMGELGLLAMDVPEELSGAGLGYLAYSIALEEISRACASTGVIMSVNNSLYLGPILKFGSAQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFL 214          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADS_RAT (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acads PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 54/186 (29.03%), Postives = 91/186 (48.92%), Query Frame = 1
Query:  139 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFI 696
            S+   +T    +++   FA + + P AA++D+ + FP   +  K MG   L  +  P+E          + IA+EEISR   S G+    +++L +  +++ GS  QK +++    +G+ +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A TD     +  S F+
Sbjct:   31 SVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFP--TSQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFL 214          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADS_HUMAN (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADS PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.520e-20
Identity = 57/186 (30.65%), Postives = 89/186 (47.85%), Query Frame = 1
Query:  139 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFI 696
            S+   +T     ++   FA + + P AA++D+ + FP      K MG   L  +  P+E          + IAMEEISR   S G+    +++L +  +++ GS  QK  ++    SG+ +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A TD  L  +  S F+
Sbjct:   31 SVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFP--AAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKGISAFL 214          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACDSB_MOUSE (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadsb PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.747e-19
Identity = 57/196 (29.08%), Postives = 102/196 (52.04%), Query Frame = 1
Query:  115 HSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFN--LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFI 696
            ++ AF+    L D+ ++  K++V +FA+E++AP  + +D+++   + V    + G F   L GI    +            + +EE+++   SV L     + +  N   +H S  QK  YLPKL++ E +G+  +SE  AGSD   MK +AD+    Y++NG+KMW ++   A+  +V+A  D     R  + F+
Sbjct:   47 NAVAFAPLQTLTDE-EIMMKQTVKKFAQEHVAPLVSSMDENSKMEKSV----IQGLFQQGLMGIEVEAQYGGTEASFFCSVLVIEELAKVDASVALLCDIQNTIINNLFRKHASEEQKATYLPKLVT-EKLGSFCLSEAGAGSDSFAMKTRADKSGNYYVLNGSKMWISHAEHAELFLVFANVDPSSGYRGITCFL 236          
The following BLAST results are available for this feature:
BLAST of FC929962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
ACDC_BACSU1.249e-2539.16Probable acyl-CoA dehydrogenase yngJ OS=Bacillus s... [more]
ACDA_BACSU1.249e-2536.00Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=acd... [more]
FADE_BACSU8.379e-2234.21Probable acyl-CoA dehydrogenase OS=Bacillus subtil... [more]
ACADS_PONAB7.094e-2131.18Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_BOVIN9.264e-2131.02Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_PIG1.210e-2030.65Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_MOUSE2.696e-2029.57Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_RAT3.520e-2029.03Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_HUMAN3.520e-2030.65Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACDSB_MOUSE1.747e-1929.08Short/branched chain specific acyl-CoA dehydrogena... [more]

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Properties
Property NameValue
Genbank descriptionC34002C10EF PostHarvC1 Citrus clementina cDNA clone C34002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929962 ID=FC929962; Name=FC929962; organism=Citrus clementina; type=EST; length=714bp
GAAAACACAAAGAGAGGAGAGAAAGTAAAAAAGGGAAAAAGGTAAGAGAG
AAGAATGCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTA
CGAAGAAGCAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTT
GATGACACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGA
AAACATTGCTCCTCGTGCGGCAAAAATTGACCAATCAAATTCGTTCCCAC
AGGATGTTAATTTATGGAAACTCATGGGAAATTTCAATCTCCATGGAATA
ACAGCTCCACAGGAATACGGAGGGCTTGGACTTGGTTACTTGTATCATTG
CATAGCAATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTT
ACGGTGCCCATTCTAATTTGTGCATCAATCAATTGGTGAGACATGGAAGC
CCTGCTCAGAAAGACAAGTACTTGCCCAAGCTCATTAGCGGAGAACATGT
AGGTGCTCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCA
TGAAATGCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAATGGGAAC
AAGATGTGGTGCACCAATGGTCCAGTTGCTCAGACGTTGGTTGTTTACGC
AAAAACAGACATTAAGCTGGCTCAAAGGAATCACAGCATTTTCATAGAGA
AAGGAATGCCGGAT
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