FC929962

Overview
NameFC929962
Unique NameFC929962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADM_DROME (Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG12262 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.282e-19
Identity = 63/180 (35.00%), Postives = 92/180 (51.11%), Query Frame = 1
Query:  130 SSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAH-SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 660
            + TS    + QLQ +E   +F RE I P AA+ D+S  +P  +    W+L G  N H    P +           C++ EE+  A G  G+      S L    ++  G+  QK KYL +L+    V A  ++EP AGSDV G+K +A++    ++ING KMW TNG VA    V A+T+
Sbjct:   31 NGTSFALTEDQLQLQELARKFTREEIIPVAAQYDKSGEYPWPIIKKAWEL-GLMNNH---IPADIGGLDLDVFTTCLSAEEL--AYGCTGIMTALEASGLGQTPVILSGNKEQKKKYLGRLLEEPLVAAYCVTEPGAGSDVSGIKTRAEKKGDEWVINGQKMWITNGGVANWYFVLARTN 204          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACAD9_HUMAN (Acyl-CoA dehydrogenase family member 9, mitochondrial OS=Homo sapiens GN=ACAD9 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.282e-19
Identity = 65/200 (32.50%), Postives = 98/200 (49.00%), Query Frame = 1
Query:   76 RSLCASFFTKKQKHSAAFSSTSLLFDDTQL--QFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG--GYIINGNKMWCTNGPVAQTLVVYAKTDI 663
            R+     F  K K    F    +  D+     QF   V +F  E +  R  KIDQ    P D  L KL  +  L G+  P+E          +   + EI    GS+ ++  AH  + +  ++  G+  QK KYLPKL SGEH+ A  ++EP +GSD   ++ +A   +    YI+NG+K+W TNG +A    V+AKT++
Sbjct:   37 RAFAKELFLGKIKKKEVFPFPEVSQDELNEINQFLGPVEKFFTEEVDSR--KIDQEGKIP-DETLEKLK-SLGLFGLQVPEEYGGLGFSNTMYS-RLGEIISMDGSITVTLAAHQAIGLKGIILAGTEEQKAKYLPKLASGEHIAAFCLTEPASGSDAASIRSRATLSEDKKHYILNGSKVWITNGGLANIFTVFAKTEV 231          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACDSB_RAT (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadsb PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 59/186 (31.72%), Postives = 97/186 (52.15%), Query Frame = 1
Query:  148 FDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFN--LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFI 696
            F D  +  +++V +FA+E IAP  + +D+++   + V    + G F   + GI    +            + +EE+++   SV L      N  IN+L R HG+  QK  YLPKL++ E +G+  +SE  AGSD   +K +AD+    Y+ING+KMW +N   A+  +V+A  D     R  + F+
Sbjct:   57 FTDEDIMMQKAVKKFAQEQIAPLVSTMDENSKMEKSV----IQGLFQQGMMGIEVEAKYGGTEASFLCSVLVIEELAKVDASVALLCDIQ-NTVINKLFRKHGTEEQKATYLPKLVT-EKLGSFCLSEAGAGSDSFALKTRADKSGNYYVINGSKMWISNAEHAELFLVFANVDPPSGYRGITCFL 236          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACDSB_BOVIN (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADSB PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 57/188 (30.32%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  148 FDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFN--LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFIEKG 705
            F D ++  K +V +FA+E +AP  +K+D+ +   + V    + G F   L GI    +            + +EE+++   SV L     + L    + ++G+  QK  YLPKL + E   ++ +SE  AGSD   MK +AD+    YIING+KMW ++  +A   VV A  D     +  + F+  G
Sbjct:   57 FTDEEMMIKSAVKKFAQEQVAPFVSKMDEDSKMEKSV----IQGLFQQGLMGIEIDTKYGGTGASFFSSVLVIEELAKVDASVALVCDIQNTLINRMIGKYGTEEQKATYLPKLAT-EKASSICISETGAGSDSFAMKTRADKKGDYYIINGSKMWISSAEIAGLFVVMANADFSAGYKGITCFLVDG 239          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADL_MOUSE (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadl PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.479e-18
Identity = 52/183 (28.42%), Postives = 98/183 (53.55%), Query Frame = 1
Query:  169 FKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSI---FIEKGM 708
            F+ESV +F +E + P   + +++    ++V  W+  G   L GI   ++            +  EE    S   G  +  HS++ +  +  +G+  Q +K++P++ +G+ +GA+AM+EP AGSD+ G++  A R    +I+NG+K++ TNG ++  ++V A T+ +     H I    +E GM
Sbjct:   60 FRESVRKFFQEEVIPHHTEWEKAGEVSREV--WEKAGKQGLLGINIAEKHGGIGGDLLSTAVTWEE-QAYSNCTGPGFSLHSDIVMPYIANYGTKEQIEKFIPQMTAGKCIGAIAMTEPGAGSDLQGVRTNAKRSGSDWILNGSKVFITNGWLSDLVIVVAVTNREARSPAHGISLFLVENGM 239          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACDSB_PONAB (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=ACADSB PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.304e-18
Identity = 59/186 (31.72%), Postives = 96/186 (51.61%), Query Frame = 1
Query:  148 FDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFN--LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFI 696
            F D ++  K SV +FA+E IAP  + +D+++   + V    + G F   L GI    E            + +EE+++   SV + +    N  IN L+R HG+  QK  YLP+L + E VG+  +SE  AGSD   +K +AD+    Y++NG+KMW ++   A   +V A  D  +  +  + F+
Sbjct:   57 FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSV----IQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAV-FCEIQNTLINTLIRKHGTEEQKGTYLPQLTT-EKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFL 236          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADL_HUMAN (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADL PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.304e-18
Identity = 51/183 (27.87%), Postives = 99/183 (54.10%), Query Frame = 1
Query:  169 FKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSI---FIEKGM 708
            F++SV +F +E + P  ++ +++    ++V  W+  G   L G+   +             I  EE + ++ S G  +  HS + ++ +  HGS  Q   ++P++ +G+ +GA+AM+EP AGSD+ G+K  A +    +I+NG+K++ +NG ++  ++V A T+ +     H I    +E GM
Sbjct:   60 FRKSVRKFFQEEVIPHHSEWEKAGEVSREV--WEKAGKQGLLGVNIAEHLGGIGGDLYSAAIVWEEQAYSNCS-GPGFSIHSGIVMSYITNHGSEEQIKHFIPQMTAGKCIGAIAMTEPGAGSDLQGIKTNAKKDGSDWILNGSKVFISNGSLSDVVIVVAVTNHEAPSPAHGISLFLVENGM 239          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACDSB_HUMAN (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADSB PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18
Identity = 59/186 (31.72%), Postives = 96/186 (51.61%), Query Frame = 1
Query:  148 FDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFN--LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFI 696
            F D ++  K SV +FA+E IAP  + +D+++   + V    + G F   L GI    E            + +EE+++   SV + +    N  IN L+R HG+  QK  YLP+L + E VG+  +SE  AGSD   +K +AD+    Y++NG+KMW ++   A   +V A  D  +  +  + F+
Sbjct:   57 FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSV----IQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAV-FCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFL 236          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADL_PIG (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADL PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.621e-18
Identity = 53/183 (28.96%), Postives = 96/183 (52.46%), Query Frame = 1
Query:  169 FKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSI---FIEKGM 708
            F+ESV +F +E + P  A+ +++    ++  LW+  G   L GI   +             I  EE    S   G  +  HS++ +  +  +GS  Q   ++P++ +G+ +GA+AM+EP AGSD+ G++  A +    +I+NG+K++ TNG ++  ++V A T+ +     H I    +E GM
Sbjct:   60 FRESVRKFFQEEVIPHHAEWEKAGEVSRE--LWEKAGKQGLLGINIAERHGGIGGDLYSAAIVWEE-QAYSNCTGPGFSLHSDIVMPYIANYGSEEQIKHFIPQMTAGKCIGAIAMTEPGAGSDLQGVRTNAKKDGSDWILNGSKVFITNGWLSDVVIVVAVTNREARSPAHGISLFLVENGM 239          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADL_RAT (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadl PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.587e-18
Identity = 51/183 (27.87%), Postives = 98/183 (53.55%), Query Frame = 1
Query:  169 FKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSI---FIEKGM 708
            F+ESV +F +E + P   + +++    ++  LW+  G   L GI   ++            +  EE    S   G  +  HS++ +  +  +G+  Q ++++P++ +G+ +GA+AM+EP AGSD+ G++  A R    +I+NG+K++ TNG ++  ++V A T+ +     H I    +E GM
Sbjct:   60 FRESVRKFFQEEVIPYHEEWEKAGEVSRE--LWEKAGKQGLLGINIAEKHGGIGGDLLSTAVTWEE-QAYSNCTGPGFSLHSDIVMPYIANYGTKEQIEQFIPQMTAGKCIGAIAMTEPGAGSDLQGVRTNAKRSGSDWILNGSKVFITNGWLSDLVIVVAVTNREARSPAHGISLFLVENGM 239          
The following BLAST results are available for this feature:
BLAST of FC929962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
ACADM_DROME2.282e-1935.00Probable medium-chain specific acyl-CoA dehydrogen... [more]
ACAD9_HUMAN2.282e-1932.50Acyl-CoA dehydrogenase family member 9, mitochondr... [more]
ACDSB_RAT8.671e-1931.72Short/branched chain specific acyl-CoA dehydrogena... [more]
ACDSB_BOVIN8.671e-1930.32Short/branched chain specific acyl-CoA dehydrogena... [more]
ACADL_MOUSE1.479e-1828.42Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
ACDSB_PONAB4.304e-1831.72Short/branched chain specific acyl-CoA dehydrogena... [more]
ACADL_HUMAN4.304e-1827.87Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
ACDSB_HUMAN5.621e-1831.72Short/branched chain specific acyl-CoA dehydrogena... [more]
ACADL_PIG5.621e-1828.96Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
ACADL_RAT9.587e-1827.87Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]

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Properties
Property NameValue
Genbank descriptionC34002C10EF PostHarvC1 Citrus clementina cDNA clone C34002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929962 ID=FC929962; Name=FC929962; organism=Citrus clementina; type=EST; length=714bp
GAAAACACAAAGAGAGGAGAGAAAGTAAAAAAGGGAAAAAGGTAAGAGAG
AAGAATGCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTA
CGAAGAAGCAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTT
GATGACACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGA
AAACATTGCTCCTCGTGCGGCAAAAATTGACCAATCAAATTCGTTCCCAC
AGGATGTTAATTTATGGAAACTCATGGGAAATTTCAATCTCCATGGAATA
ACAGCTCCACAGGAATACGGAGGGCTTGGACTTGGTTACTTGTATCATTG
CATAGCAATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTT
ACGGTGCCCATTCTAATTTGTGCATCAATCAATTGGTGAGACATGGAAGC
CCTGCTCAGAAAGACAAGTACTTGCCCAAGCTCATTAGCGGAGAACATGT
AGGTGCTCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCA
TGAAATGCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAATGGGAAC
AAGATGTGGTGCACCAATGGTCCAGTTGCTCAGACGTTGGTTGTTTACGC
AAAAACAGACATTAAGCTGGCTCAAAGGAATCACAGCATTTTCATAGAGA
AAGGAATGCCGGAT
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