FC929962

Overview
NameFC929962
Unique NameFC929962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: GCDH_DICDI (Glutaryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gcdh PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 58/196 (29.59%), Postives = 94/196 (47.96%), Query Frame = 1
Query:  133 STSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD-GGYIINGNKMWCTNGPVAQTLVVYAKT---DIKLAQRNHSIFIEKGM 708
            S   L  + ++  ++ V +F ++ + PR     +   F +++   +  G   + G T P               A+E++     S   +    S+L ++ +   G+ AQK KYL  L SG+ VG   ++EPNAGSD  GM+ +A +   G Y++NG K W TN P+A   VV+AK    DI+         +EKGM
Sbjct:   44 SLESLLTEEEVMIRDQVNKFCQDELMPRIQMAYRDEKFDREI--MREYGKMGMLGATIPAYGGVSHVAYGLMANAVEKVDSGYRS---AMSVQSSLVMHPINTFGTDAQKSKYLDGLASGDLVGCFGLTEPNAGSDPAGMQTRAVKNSAGNYVLNGTKTWITNSPIADVFVVWAKVENGDIR------GFVLEKGM 228          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADM_MACFA (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADM PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 63/190 (33.16%), Postives = 92/190 (48.42%), Query Frame = 1
Query:  100 TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 660
            TK  +        S  F + Q +F+ +  +FARE I P AA+ D++  +P  +    W+L G  N H    PQ            C+  EE+  A G  G+      N L    ++  G+  QK KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D
Sbjct:   25 TKADRQREPGLGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNPH---IPQNCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNEQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKASWYFLLARSD 208          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACAD9_MOUSE (Acyl-CoA dehydrogenase family member 9, mitochondrial OS=Mus musculus GN=Acad9 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 57/168 (33.93%), Postives = 88/168 (52.38%), Query Frame = 1
Query:  166 QFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDI 663
            QF   + +F  E +  R  KIDQ    P D  L KL  +  L GI  P+E          +   + EI     S+ ++  AH  + +  ++  G+  QK KYLPKL SGEH+ A  ++EP +GSD   ++ +A   +    +I+NG+K+W TNG +A    V+AKT++
Sbjct:   73 QFVGPLEKFFTEEVDSR--KIDQEGKIPVDT-LEKLK-SLGLFGIQVPEEYGGLGLSNTMYA-RLGEIISLDASITVTLAAHQAIGLKGIILVGNDEQKAKYLPKLSSGEHIAAFCLTEPASGSDAASIQTRATLSEDKKYFILNGSKVWITNGGLANIFTVFAKTEV 235          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADM_PANTR (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pan troglodytes GN=ACADM PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 62/190 (32.63%), Postives = 92/190 (48.42%), Query Frame = 1
Query:  100 TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 660
            TK  +        S  F + Q +F+ +  +FARE I P AA+ D++  +P  +    W+L G  N H    P+            C+  EE+  A G  G+      N L    ++  G+  QK KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D
Sbjct:   25 TKANRQREPGLGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPENCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSD 208          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADM_HUMAN (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADM PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.635e-17
Identity = 62/190 (32.63%), Postives = 92/190 (48.42%), Query Frame = 1
Query:  100 TKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 660
            TK  +        S  F + Q +F+ +  +FARE I P AA+ D++  +P  +    W+L G  N H    P+            C+  EE+  A G  G+      N L    ++  G+  QK KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D
Sbjct:   25 TKANRQREPGLGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPENCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSD 208          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADM_BOVIN (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADM PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.758e-17
Identity = 60/180 (33.33%), Postives = 91/180 (50.56%), Query Frame = 1
Query:  130 SSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 660
            S  S  F + Q +F+ +  +FARE I P AA+ D++  +P  +    W+L G  N H    P+            C+  EE+  A G  G+     +N L    ++  G+  Q+ KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D
Sbjct:   35 SGFSFEFTEQQKEFQATARKFAREEIIPLAAEYDKTGEYPVPLIKRAWEL-GLMNTH---IPESCGGLGLGTFDSCLISEEL--AYGCTGVQTAIEANSLGQMPVIIAGNDQQQKKYLGRMTEEPLMCAYCVTEPVAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSD 208          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADV_HUMAN (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADVL PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.116e-17
Identity = 51/172 (29.65%), Postives = 85/172 (49.42%), Query Frame = 1
Query:  175 ESVGQFARENIAPRAAKIDQSNSFPQDVNL-------WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDI 663
            E   QF +E + P +   ++ N   ++  L       W+ +      G+  P E          +   +E +      VG++ GAH ++    ++  G+ AQK+KYLPKL SGE V A  ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT +
Sbjct:   96 EEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPV 267          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADM_PIG (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADM PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.060e-16
Identity = 64/199 (32.16%), Postives = 97/199 (48.74%), Query Frame = 1
Query:   91 SFFTKKQKHSAAF------SSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 660
            S F  + +H+ A       S  S    + Q +F+ +  +FARE I P AA+ D++  +P  +    W+L G  N H    P+            C+  EE+  A G  G+     +N L    L+  G+  Q+ KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D
Sbjct:   16 SHFGWRSQHTKAVPQCEPGSGFSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWEL-GLMNTH---IPESFGGLGLGIIDSCLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSD 208          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: IVD_CAEEL (Probable acyl coa dehydrogenase 6 OS=Caenorhabditis elegans GN=acdh-6 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 55/194 (28.35%), Postives = 97/194 (50.00%), Query Frame = 1
Query:  121 AAFSST--SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRAS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT-DIKLAQRNHSI 690
            A  SST   +++D+     + S+ +  +E I P  A+ ++S  +P    ++K++G   +  +  P +               E+I     GS+ +S    S++    L + GS + ++++L   I+G+ V ++A+SEP+AGSDV  ++  A R     IING+KMW TNG  A    V   T + K   +N S+
Sbjct:   14 ATTSSTVKHMIYDEPHFAMQNSLAKLIKEKINPNVAQWEKSGRYPAHF-VFKMLGQLGVFAVNKPVDYGGTGRDFAMSIAIAEQIGAVDCGSIPMSVMVQSDMSTPALAQFGSDSLRNRFLRPSINGDLVSSIAVSEPHAGSDVSAIRTHARRYGSDLIINGSKMWITNGDQADWACVLVNTSNAKNLHKNKSL 206          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACDS_MEGEL (Acyl-CoA dehydrogenase, short-chain specific OS=Megasphaera elsdenii PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 46/126 (36.51%), Postives = 76/126 (60.32%), Query Frame = 1
Query:  346 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG-YIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSI---FIEKGMP 711
            + +A+EE+++    V ++  A  +LC N + + G+ AQK+K+L  L+ G  +GA  ++EPNAG+D  G +  A + D G Y +NG+K++ TNG  A   +V+A TD   ++ NH I    +E G P
Sbjct:   72 YILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTD--KSKGNHGITAFILEDGTP 195          
The following BLAST results are available for this feature:
BLAST of FC929962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
GCDH_DICDI1.252e-1729.59Glutaryl-CoA dehydrogenase, mitochondrial OS=Dicty... [more]
ACADM_MACFA1.252e-1733.16Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACAD9_MOUSE1.252e-1733.93Acyl-CoA dehydrogenase family member 9, mitochondr... [more]
ACADM_PANTR1.635e-1732.63Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_HUMAN1.635e-1732.63Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_BOVIN4.758e-1733.33Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADV_HUMAN8.116e-1729.65Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADM_PIG1.060e-1632.16Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
IVD_CAEEL1.808e-1628.35Probable acyl coa dehydrogenase 6 OS=Caenorhabditi... [more]
ACDS_MEGEL1.808e-1636.51Acyl-CoA dehydrogenase, short-chain specific OS=Me... [more]

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Properties
Property NameValue
Genbank descriptionC34002C10EF PostHarvC1 Citrus clementina cDNA clone C34002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929962 ID=FC929962; Name=FC929962; organism=Citrus clementina; type=EST; length=714bp
GAAAACACAAAGAGAGGAGAGAAAGTAAAAAAGGGAAAAAGGTAAGAGAG
AAGAATGCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTA
CGAAGAAGCAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTT
GATGACACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGA
AAACATTGCTCCTCGTGCGGCAAAAATTGACCAATCAAATTCGTTCCCAC
AGGATGTTAATTTATGGAAACTCATGGGAAATTTCAATCTCCATGGAATA
ACAGCTCCACAGGAATACGGAGGGCTTGGACTTGGTTACTTGTATCATTG
CATAGCAATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTT
ACGGTGCCCATTCTAATTTGTGCATCAATCAATTGGTGAGACATGGAAGC
CCTGCTCAGAAAGACAAGTACTTGCCCAAGCTCATTAGCGGAGAACATGT
AGGTGCTCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCA
TGAAATGCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAATGGGAAC
AAGATGTGGTGCACCAATGGTCCAGTTGCTCAGACGTTGGTTGTTTACGC
AAAAACAGACATTAAGCTGGCTCAAAGGAATCACAGCATTTTCATAGAGA
AAGGAATGCCGGAT
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