FC929963

Overview
NameFC929963
Unique NameFC929963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929963 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 61/173 (35.26%), Postives = 77/173 (44.51%), Query Frame = 3
Query:  171 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLK----LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEP 671
            L D ++  +N+     W A  N  F N  +   K L G         LG P      +      LPKSFDAR  WP C TI  I DQG CGSCWAFGAVEA+SDR CI     +N+ +S                   +P  AW ++   G+V+      +D    SH GC P
Sbjct:   26 LSDELVNFINKQ-NTTWTAGHN--FYNVDLSYVKKLCGT-------FLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTCCGDECGDGCNGGFPSGAWNFWTKKGLVS---GGLYD----SHVGCRP 181          
BLAST of FC929963 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 61/175 (34.86%), Postives = 79/175 (45.14%), Query Frame = 3
Query:  171 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHD----KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGC---SHPGCE 668
            L   ++  +N+    G +A  N  F N  +   K L G         LG P         + + LP +FD R  WP C TIS I DQG CGSCWAFGAVEA+SDR C+H    +S+ V+                   YP  AWRY+   G+V+     Y    GC   + P CE
Sbjct:   26 LSSDLVNHINKLNTTG-RAGHN--FHNTDMSYVKKLCGT-------FLGGPKAPERVDFAEDMDLPDTFDTRKQWPNCPTISEIRDQGSCGSCWAFGAVEAISDRICVHTNAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGLVSGGL--YDSHVGCRAYTIPPCE 188          
BLAST of FC929963 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 44/102 (43.14%), Postives = 53/102 (51.96%), Query Frame = 3
Query:  318 VPVKTHD-KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT 614
            V V  HD     +P +FDAR+ WP C +I+ I DQ  CGSCWAF A EA SDRFCI  +  +N  LS                   YPI+AW+Y V  G  T
Sbjct:   69 VEVVKHDINEDTIPATFDARTQWPNCMSINNIRDQSDCGSCWAFAAAEAASDRFCIASNGAVNTLLSAE-DVLSCCSNCGYGCEGGYPINAWKYLVKSGFCT 169          
BLAST of FC929963 vs. ExPASy Swiss-Prot
Match: CPR5_CAEEL (Cathepsin B-like cysteine proteinase 5 OS=Caenorhabditis elegans GN=cpr-5 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 40/92 (43.48%), Postives = 50/92 (54.35%), Query Frame = 3
Query:  351 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT 614
            +P  FDAR  WP C +I+ I DQ  CGSCWAF A EA+SDR CI  +  +N  LS                     YPI AW+++V HG+VT
Sbjct:   82 IPDHFDARDQWPNCMSINNIRDQSDCGSCWAFAAAEAISDRTCIASNGAVNTLLSSEDLLSCCTGMFSCGNGCEGGYPIQAWKWWVKHGLVT 173          
BLAST of FC929963 vs. ExPASy Swiss-Prot
Match: CPR3_CAEEL (Cathepsin B-like cysteine proteinase 3 OS=Caenorhabditis elegans GN=cpr-3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 40/102 (39.22%), Postives = 47/102 (46.08%), Query Frame = 3
Query:  351 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT------EECDPY 632
            LP +FDAR  WP C+TI  I +Q  CGSCWAFGA E +SDR CI         +SV                  Y I A R++   G VT        C PY
Sbjct:   92 LPDTFDAREKWPDCNTIKLIRNQATCGSCWAFGAAEVISDRVCIQSNGTQQPVISVEDILSCCGTTCGYGCKGGYSIEALRFWASSGAVTGGDYGGHGCMPY 193          
BLAST of FC929963 vs. ExPASy Swiss-Prot
Match: CYSP2_HAECO (Cathepsin B-like cysteine proteinase 2 OS=Haemonchus contortus GN=AC-2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 40/123 (32.52%), Postives = 56/123 (45.53%), Query Frame = 3
Query:  336 DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSHPGCEPAY 677
            D  + +P S+D R  W  C+T   I DQ +CGSCWA     A+SDR CI       +++S                   +PI AW+YF++ GVV+       + C PY     C H G +  Y
Sbjct:   82 DPEVDIPPSYDPRDVWKNCTTFY-IRDQANCGSCWAVSTAAAISDRICIASKAEKQVNISATDIMTCCRPQCGDGCEGGWPIEAWKYFIYDGVVSGGEYLTKDVCRPY-PIHPCGHHGNDTYY 202          
BLAST of FC929963 vs. ExPASy Swiss-Prot
Match: CYSP1_HAECO (Cathepsin B-like cysteine proteinase 1 OS=Haemonchus contortus GN=AC-1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 40/123 (32.52%), Postives = 56/123 (45.53%), Query Frame = 3
Query:  336 DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSHPGCEPAY 677
            D  + +P S+D R  W  C+T   I DQ +CGSCWA     A+SDR CI       +++S                   +PI AW+YF++ GVV+       + C PY     C H G +  Y
Sbjct:   82 DPEVDIPPSYDPRDVWKNCTTFY-IRDQANCGSCWAVSTAAAISDRICIASKAEKQVNISATDIMTCCRPQCGDGCEGGWPIEAWKYFIYDGVVSGGEYLTKDVCRPY-PIHPCGHHGNDTYY 202          
BLAST of FC929963 vs. ExPASy Swiss-Prot
Match: CPR1_CAEEL (Gut-specific cysteine proteinase OS=Caenorhabditis elegans GN=cpr-1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 38/102 (37.25%), Postives = 49/102 (48.04%), Query Frame = 3
Query:  351 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHF--GMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT------EECDPY 632
            +P +FD+R+ W +C +I  I DQ  CGSCWAFGA E +SDR CI         +S +                 YPI A R++   GVVT        C PY
Sbjct:   85 VPATFDSRTQWSECKSIKLIRDQATCGSCWAFGAAEMISDRTCIETKGAQQPIISPDDLLSCCGSSCGNGCEGGYPIQALRWWDSKGVVTGGDYHGAGCKPY 186          
The following BLAST results are available for this feature:
BLAST of FC929963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CATB_PIG1.783e-1835.26Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]
CATB_CHICK1.783e-1834.86Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
CPR4_CAEEL2.665e-1443.14Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]
CPR5_CAEEL4.546e-1443.48Cathepsin B-like cysteine proteinase 5 OS=Caenorha... [more]
CPR3_CAEEL5.557e-1239.22Cathepsin B-like cysteine proteinase 3 OS=Caenorha... [more]
CYSP2_HAECO7.257e-1232.52Cathepsin B-like cysteine proteinase 2 OS=Haemonch... [more]
CYSP1_HAECO7.257e-1232.52Cathepsin B-like cysteine proteinase 1 OS=Haemonch... [more]
CPR1_CAEEL6.144e-1137.25Gut-specific cysteine proteinase OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionC34002C11EF PostHarvC1 Citrus clementina cDNA clone C34002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929963 ID=FC929963; Name=FC929963; organism=Citrus clementina; type=EST; length=685bp
AACAAGAAAAGTGCTCTCTCCCATTTCTCCTCTCTTCGTCCTTCCCGAGC
CAGTCATCCATGGCTTCATCTCACCTCTTTCTTACTACATGTTTGTTAAT
TCTTGGCGTTATCTCCTCCCAGACTTTTGCAGAGGGAGTGGTTTCCAAGC
TCAAGCTTGATTCTCATATTCTCCAGGATTCAATCATCAAAGAAGTGAAT
GAGAACCCTAAGGCTGGATGGAAAGCTGCCAGAAATCCTCAATTTTCCAA
TTACACTGTTGGGCAATTTAAGCACCTTCTTGGAGTCAAGCCAACACCTA
AAGGGCTGCTCTTGGGTGTCCCTGTTAAAACTCATGACAAATCCTTGAAG
TTGCCTAAAAGCTTTGATGCAAGGTCCGCTTGGCCACAATGCAGCACCAT
TAGTAGGATCCTAGATCAGGGCCATTGTGGTTCTTGTTGGGCTTTTGGTG
CTGTTGAAGCGCTATCTGATCGTTTCTGCATCCATTTTGGCATGAACCTA
TCTCTATCAGTTAATGATCTTTTAGCCTGCTGTGGCTTTTTGTGTGGAGA
TGGTTGTGACGGGGGTTATCCAATTTCTGCATGGCGATACTTTGTCCACC
ATGGTGTTGTTACCGAAGAGTGTGATCCCTACTTTGATAGTACTGGCTGT
TCCCACCCTGGTTGTGAGCCGGCATATCCTACTCC
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