FC929968

Overview
NameFC929968
Unique NameFC929968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3PC_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Scenedesmus vacuolatus GN=GapC PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 35/78 (44.87%), Postives = 43/78 (55.13%), Query Frame = 3
Query:  471 NGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            NGFGRIG L                NDPFI+ +YMAYMFKYDS HG ++G +   D   + ING+ IK     DP +I
Sbjct:    1 NGFGRIGSLVLRATLDRKDVKVVAINDPFIEGEYMAYMFKYDSVHGRYEGDVQ-GDKHGITINGEQIKTLAMMDPTQI 77          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 38/80 (47.50%), Postives = 43/80 (53.75%), Query Frame = 3
Query:  465 GINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            GINGF                      NDPFID +YM YMFKYDSTHG FKGT+    D  L +NG  I V  +RDPA+I
Sbjct:    7 GINGFRSHWPYCLACSLENPKVKVVAINDPFIDLEYMVYMFKYDSTHGRFKGTVE-HKDGKLVVNGHEIAVHAERDPAQI 85          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_LACLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactococcus lactis subsp. lactis GN=gap PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGRL                ND   D   +A++ KYD+T G FKGT+ V +D   ++NGK +KV  +R+P +I
Sbjct:    4 KVGINGFGRIGRLALRRIQEVEGVEVAHIND-LTDPAMLAHLLKYDTTQGRFKGTVEVKEDG-FDVNGKFVKVTAERNPEDI 83          
The following BLAST results are available for this feature:
BLAST of FC929968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
G3PC_SCEVA3.823e-1144.87Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_RHIRA3.823e-1147.50Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]
G3P_LACLA6.521e-1143.90Glyceraldehyde-3-phosphate dehydrogenase OS=Lactoc... [more]

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Properties
Property NameValue
Genbank descriptionC34002D04EF PostHarvC1 Citrus clementina cDNA clone C34002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929968 ID=FC929968; Name=FC929968; organism=Citrus clementina; type=EST; length=704bp
AGGCGGCAAAAAAAAATAAAAAACAAAAAAAAAATTCTTTTGTTTTTGCA
CTTTAATAAGAGCACATTTCGTTTCATTTCTGGCTTGTGCCTACTGCCTC
CTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGGGTTTTTGC
GAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGGCCTTCTCT
TCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCCGACCTCAC
TTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGCTTTCAGTC
GCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAAGTGGTTCA
TCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAACCCATCAG
AGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACGGAGTGATG
GAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAAGGTTGGTT
TTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCGGTCAATGA
TCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTATGATTCTA
CTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACTCCACCTTA
GAAATTAATGGGAAGCTGATTAAAGTTTTTCAGCAAAGGGACCCGGCAGA
GATC
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