FC929968

Overview
NameFC929968
Unique NameFC929968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.733e-17
Identity = 46/82 (56.10%), Postives = 51/82 (62.20%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                NDPFID  YM YMFKYDSTHG FKG++  V D  L IN K I VF ++DPA I
Sbjct:    4 KVGINGFGRIGRIVLRNAIEHGDLEVVAVNDPFIDLDYMVYMFKYDSTHGRFKGSVE-VKDGKLYINNKAIAVFGEKDPANI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.733e-17
Identity = 47/83 (56.63%), Postives = 50/83 (60.24%), Query Frame = 3
Query:  456 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            TKVGINGFGRIGR+                NDPFID  YM YMFKYDSTHG FKG +    D  L I GK I VF +RDPA I
Sbjct:    3 TKVGINGFGRIGRIVLRNALEHGDIDVVAINDPFIDLDYMVYMFKYDSTHGRFKGKVE-TKDGKLVIEGKPISVFGERDPAAI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.570e-17
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKGTI+ V+ + L +NGK +  +Q+RDPA I
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHGEVNVVAVNDPFIETHYAAYMLKYDSTHGQFKGTID-VNSNGLTVNGKAVTFYQERDPASI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                NDPFI+ KY AYM +YD+THG FKGTI  VD + L +NGK +K + +RDPA I
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHDDIHIVAVNDPFIEPKYAAYMLRYDTTHGNFKGTIE-VDGADLVVNGKKVKFYTERDPAAI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 44/83 (53.01%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  456 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            T+VGINGFGRIGR+                NDPFI  +YM YMFKYDS HG F+GT+    D  L +NGK I VF +RDPA+I
Sbjct:    3 TQVGINGFGRIGRIVLRASLSNPEVQVVAINDPFIPLEYMVYMFKYDSVHGRFQGTVE-AKDGKLVVNGKEISVFSERDPAQI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 47/81 (58.02%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  462 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            VGINGFGRIGRL                NDPFI   Y AYMFKYDSTHG FKGT+   +   L INGK I+VFQ+RDPA I
Sbjct:    5 VGINGFGRIGRLVLRIALSRDDINVIAINDPFIAPDYAAYMFKYDSTHGKFKGTV-THEGKYLVINGKKIEVFQERDPANI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 43/82 (52.44%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                NDPFI+ KY AYM KYDSTHG FKG I     + L +N K I  +Q+RDPA I
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHDDVEIVAVNDPFIETKYAAYMLKYDSTHGQFKGDIQHSSSNNLTVNNKTIHFYQERDPANI 85          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 44/82 (53.66%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG F GT+   D +TL +NGK IK + +RDPA+I
Sbjct:    5 KVGINGFGRIGRIVFRNAIEHEGVDIVAVNDPFIEVHYAAYMLKYDSTHGRFNGTVE-FDGNTLIVNGKKIKFYAERDPAQI 85          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 45/82 (54.88%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFG IGRL                NDPFID  YM YMFKYDSTHG FKGT+   ++  L IN ++I VFQ+RDP+ I
Sbjct:    3 KVGINGFGCIGRLVTRAAFDSGKVQVVAINDPFIDLDYMVYMFKYDSTHGRFKGTVK-AENGKLIINDQVITVFQERDPSSI 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 43/79 (54.43%), Postives = 49/79 (62.03%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDP 695
            K GINGFGRIGR+                NDPFID +YM YMFKYDSTHG FKGT+    D  L +NGK I V+ +RDP
Sbjct:    4 KAGINGFGRIGRIVLRASLLNPEVEVVAINDPFIDLEYMVYMFKYDSTHGRFKGTVE-AKDGKLVVNGKPISVYAERDP 81          
The following BLAST results are available for this feature:
BLAST of FC929968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
G3P_CRYNE2.733e-1756.10Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_CRYCU2.733e-1756.63Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_AJECA3.570e-1753.66Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P_NEUCR4.662e-1753.66Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P2_RHIRA4.662e-1753.01Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P_PICAN6.089e-1758.02Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_PARBA6.089e-1752.44Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_MONAN6.089e-1753.66Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_XENLA1.039e-1654.88Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_RHIMI1.039e-1654.43Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]

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Properties
Property NameValue
Genbank descriptionC34002D04EF PostHarvC1 Citrus clementina cDNA clone C34002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929968 ID=FC929968; Name=FC929968; organism=Citrus clementina; type=EST; length=704bp
AGGCGGCAAAAAAAAATAAAAAACAAAAAAAAAATTCTTTTGTTTTTGCA
CTTTAATAAGAGCACATTTCGTTTCATTTCTGGCTTGTGCCTACTGCCTC
CTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGGGTTTTTGC
GAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGGCCTTCTCT
TCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCCGACCTCAC
TTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGCTTTCAGTC
GCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAAGTGGTTCA
TCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAACCCATCAG
AGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACGGAGTGATG
GAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAAGGTTGGTT
TTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCGGTCAATGA
TCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTATGATTCTA
CTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACTCCACCTTA
GAAATTAATGGGAAGCTGATTAAAGTTTTTCAGCAAAGGGACCCGGCAGA
GATC
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