FC929968

Overview
NameFC929968
Unique NameFC929968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 43/82 (52.44%), Postives = 51/82 (62.20%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS+HG+FKG I  VD   L +NGK I+ + +RDPA I
Sbjct:    4 KVGINGFGRIGRILLSNALEKPELSVVAVNDPFIEPTYAAYMLKYDSSHGLFKGDIE-VDGQNLVVNGKPIRFYSERDPANI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 45/83 (54.22%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  456 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            +K+GINGFGRIGRL                NDPFID  YM Y+FKYDSTHG FKGT+   D   L +NGK I VF +RDP  I
Sbjct:    2 SKIGINGFGRIGRLVLRAALDKGAEVVAV-NDPFIDVNYMVYLFKYDSTHGRFKGTV-AADGGFLVVNGKKITVFCERDPTNI 82          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 45/82 (54.88%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            K+GINGFGRIGRL                NDPFI   Y AYMFKYDSTHG +KG +    D  L I+G  IKVFQ+RDPA I
Sbjct:    4 KIGINGFGRIGRLVLRVALGRKDIEVVAVNDPFIAPDYAAYMFKYDSTHGRYKGEVTASGDD-LVIDGHKIKVFQERDPANI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  462 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            +GINGFGRIGR+                NDPFID +YM YM KYDSTHGVF G I+   D  L +NGK I VF ++DP+ I
Sbjct:    6 IGINGFGRIGRIVFRNSVVHNTANVVAINDPFIDLEYMVYMLKYDSTHGVFNGDIS-TKDGKLIVNGKSIAVFAEKDPSNI 85          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  462 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            +GINGFGRIGRL                N+PF+D KYM YMFKYDSTHG FKGT+  ++   + +NG  I VF ++DPA I
Sbjct:    5 IGINGFGRIGRLVLRASLENPECRVLAINEPFMDVKYMVYMFKYDSTHGRFKGTVEDINGEFV-VNGNKIHVFAEKDPANI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 44/81 (54.32%), Postives = 52/81 (64.20%), Query Frame = 3
Query:  462 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            +GINGFGRIGRL                NDPFI  +Y AYMFKYDSTHG +KG +   DDS L I+G+ IKVF ++DPA I
Sbjct:    5 IGINGFGRIGRLVLRIALQRSDIKVVAVNDPFIAPEYAAYMFKYDSTHGRYKGEVTSKDDS-LVIDGQSIKVFGEKDPASI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG +    D+ L+++GK ++ +Q+RDPA I
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVK-FSDNGLDVDGKHVRFYQERDPANI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG I  VD + L +NGK I+   ++DPA I
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHNDVDIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIK-VDGNNLTVNGKTIRFHMEKDPANI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 43/82 (52.44%), Postives = 51/82 (62.20%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGRL                NDPFID +YM YM K DSTHG F G ++  ++  L++NGKLI V  +RDPA I
Sbjct:    5 KVGINGFGRIGRLVLRAAFLKNTVDVVSVNDPFIDLEYMVYMIKRDSTHGTFPGEVS-TENGKLKVNGKLISVHCERDPANI 85          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG I  VD + L +NGK ++   ++DPA I
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIK-VDGNNLTVNGKTVRFHMEKDPANI 84          
The following BLAST results are available for this feature:
BLAST of FC929968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
G3P_TRIAT3.022e-1652.44Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_GLOMM3.022e-1654.22Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_CANAL3.022e-1654.88Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P_USTMA5.155e-1651.85Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_DICDI5.155e-1650.62Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3P_DEBHA5.155e-1654.32Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_COCIM5.155e-1650.00Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COCHE5.155e-1652.44Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_SCHMA6.733e-1652.44Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_CURLU6.733e-1651.22Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]

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Properties
Property NameValue
Genbank descriptionC34002D04EF PostHarvC1 Citrus clementina cDNA clone C34002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929968 ID=FC929968; Name=FC929968; organism=Citrus clementina; type=EST; length=704bp
AGGCGGCAAAAAAAAATAAAAAACAAAAAAAAAATTCTTTTGTTTTTGCA
CTTTAATAAGAGCACATTTCGTTTCATTTCTGGCTTGTGCCTACTGCCTC
CTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGGGTTTTTGC
GAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGGCCTTCTCT
TCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCCGACCTCAC
TTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGCTTTCAGTC
GCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAAGTGGTTCA
TCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAACCCATCAG
AGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACGGAGTGATG
GAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAAGGTTGGTT
TTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCGGTCAATGA
TCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTATGATTCTA
CTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACTCCACCTTA
GAAATTAATGGGAAGCTGATTAAAGTTTTTCAGCAAAGGGACCCGGCAGA
GATC
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