FC929968

Overview
NameFC929968
Unique NameFC929968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.793e-16
Identity = 42/82 (51.22%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            K GINGFGRIGR+                NDPFID +YM YMFKYDS HG FKG++    D  L + GK I VF ++DPA I
Sbjct:    4 KAGINGFGRIGRIVLRNALLHGDIDVVAVNDPFIDLEYMVYMFKYDSVHGRFKGSVE-AKDGKLYVEGKPIHVFAEKDPANI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.793e-16
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  456 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            +K+GINGFGRIGRL                NDPFID  YM Y+FK+DSTHG FKGT++  +   L +NG+ I VF +RDPA I
Sbjct:    2 SKIGINGFGRIGRLVLRAAVDKGASVVAV-NDPFIDVNYMVYLFKFDSTHGRFKGTVS-AEGGFLVVNGQKITVFSERDPANI 82          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 43/82 (52.44%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS HG FKGTI   D+  L +NGK I+   +RDPA I
Sbjct:    4 KVGINGFGRIGRIVFRNAIEAGTVDVVAVNDPFIETHYAAYMLKYDSQHGQFKGTIETYDEG-LIVNGKKIRFHTERDPANI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS+HG+FKG +  VD   L +NGK ++ + +R+PA+I
Sbjct:    5 KVGINGFGRIGRIVFRNAVEHPDIEVVAVNDPFIETTYAAYMLKYDSSHGLFKGEVE-VDGKDLVVNGKKVRFYTERNPADI 85          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  456 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            +K+GINGFGRIGRL                NDPFID  YM Y+FK+DSTHG FKGT+   +   L +NG+ I VF +RDPA I
Sbjct:    2 SKIGINGFGRIGRLVLRAAIDKGASVVAV-NDPFIDVNYMVYLFKFDSTHGRFKGTV-AAEGGFLVVNGQKITVFSERDPANI 82          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  456 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            +K+GINGFGRIGRL                NDPFID  YM Y+FK+DSTHG FKGT+   +   L +NG+ I VF +RDPA I
Sbjct:    2 SKIGINGFGRIGRLVLRAAIDKGANVVAV-NDPFIDVNYMVYLFKFDSTHGRFKGTV-AAEGGFLVVNGQKITVFSERDPANI 82          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  456 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            +K+GINGFGRIGRL                NDPFID  YM Y+FK+DSTHG FKGT+   +   L +NG+ I VF +RDPA I
Sbjct:    2 SKIGINGFGRIGRLVLRAAIDKGASVVAV-NDPFIDVNYMVYLFKFDSTHGRFKGTV-AAEGGFLVVNGQKITVFSERDPANI 82          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.500e-15
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG +    ++ L+++GK ++ +Q+RDPA I
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVK-FSENGLDVDGKHVRFYQERDPANI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.500e-15
Identity = 42/81 (51.85%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  462 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            + INGFGRIGRL                NDPFI   Y AYMFKYDSTHG +KG ++  D S L INGK + VFQ++DPA +
Sbjct:    4 IAINGFGRIGRLVLRIALERKNIDVVAINDPFISVDYAAYMFKYDSTHGKYKGEVS-HDGSNLIINGKKVAVFQEKDPATL 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                NDPFID +Y AYM KYDS+HGVFKG I   D   L +NGK +K   +RDP+ I
Sbjct:    4 KVGINGFGRIGRIVFRNAVEHPEIEVVAVNDPFIDPEYAAYMLKYDSSHGVFKGEIK-KDADGLIVNGKKVKFHTERDPSAI 84          
The following BLAST results are available for this feature:
BLAST of FC929968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
G3P_PHACH8.793e-1651.22Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]
G3P_DROHY8.793e-1651.81Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P_EMENI1.148e-1552.44Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P2_TRIKO1.148e-1548.78Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P2_DROPS1.148e-1551.81Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME1.148e-1551.81Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P1_DROME1.148e-1551.81Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_COCP71.500e-1548.78Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P1_KLUMA1.500e-1551.85Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_CLAPU1.959e-1552.44Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]

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Properties
Property NameValue
Genbank descriptionC34002D04EF PostHarvC1 Citrus clementina cDNA clone C34002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929968 ID=FC929968; Name=FC929968; organism=Citrus clementina; type=EST; length=704bp
AGGCGGCAAAAAAAAATAAAAAACAAAAAAAAAATTCTTTTGTTTTTGCA
CTTTAATAAGAGCACATTTCGTTTCATTTCTGGCTTGTGCCTACTGCCTC
CTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGGGTTTTTGC
GAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGGCCTTCTCT
TCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCCGACCTCAC
TTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGCTTTCAGTC
GCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAAGTGGTTCA
TCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAACCCATCAG
AGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACGGAGTGATG
GAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAAGGTTGGTT
TTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCGGTCAATGA
TCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTATGATTCTA
CTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACTCCACCTTA
GAAATTAATGGGAAGCTGATTAAAGTTTTTCAGCAAAGGGACCCGGCAGA
GATC
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