FC929968

Overview
NameFC929968
Unique NameFC929968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            +V INGFGRIGR+                NDPFI   Y AYMFKYDSTHG + G +   DD  L I+GK IK +Q+RDPA++
Sbjct:    3 RVAINGFGRIGRIVLRIAMKRDGIDVVAINDPFITNDYAAYMFKYDSTHGRYDGEV-THDDKDLIIDGKAIKCYQERDPADL 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                NDPFI   YM YMFKYD+ HG +KGT+  V D  L ++G  I VF +++PA+I
Sbjct:    4 KVGINGFGRIGRIVLRNALQLGNIEVVAINDPFIALDYMVYMFKYDTVHGRYKGTVE-VKDGKLVVDGHAITVFAEKNPADI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  456 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            +K+GINGFGRIGRL                NDPFI  +YM YMFKYDSTHGVFKG +  ++D  L ++GK I VF +  P  I
Sbjct:    1 SKIGINGFGRIGRLVLRAALSCGAQVVAV-NDPFIALEYMVYMFKYDSTHGVFKGEVK-MEDGALVVDGKKITVFNEMKPENI 81          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 3
Query:  462 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KG ++ ++D  L ++G+ I VFQ   PAEI
Sbjct:    6 VGINGFGRIGRLVLRACLQKGIKVTAI-NDPFIDLQYMVYMFKYDSTHGRYKGEVH-MEDGKLIVDGQAISVFQCMKPAEI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = 3
Query:  462 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            VGINGFGRIGRL                NDPFI  +Y AYMFKYDSTH  +KG ++    + + I+GK I VFQ+RDP  I
Sbjct:    5 VGINGFGRIGRLVLRVALSRADIKVVAINDPFIAPEYAAYMFKYDSTHKAYKGEVS-ASGNKINIDGKEITVFQERDPVNI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 42/85 (49.41%), Postives = 48/85 (56.47%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKL---IKVFQQRDPAEI 704
            K+GINGFGRIGRL                NDPFI+  YM YMFKYDSTHG FKG ++      +  NGK    I V   +DPAEI
Sbjct:    5 KIGINGFGRIGRLVLRAAVEKDTVEVVAVNDPFINIDYMVYMFKYDSTHGRFKGHVSAEGGKLIVTNGKTTHQIAVHNSKDPAEI 89          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            K+GINGFGRIGR+                ND  ID +YMAYM KYDSTHG F GT+  V D  L +NGK I+V  +RDPA +
Sbjct:    4 KIGINGFGRIGRIVFRAAQHRDDIEVVGIND-LIDVEYMAYMLKYDSTHGRFDGTVE-VKDGNLVVNGKTIRVTAERDPANL 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            ++ INGFGRIGRL                NDPFI   Y AYMFKYDSTHG F G ++  D  +L I+GK + VFQ+RDPA +
Sbjct:    3 RIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRFDGEVS-HDGKSLIIDGKKVLVFQERDPATL 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 40/82 (48.78%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS HG FKG +  V+ S L + GK ++ + +RDPA I
Sbjct:    4 KVGINGFGRIGRIVFRNAHEHSDVEIVAVNDPFIEPHYAAYMLKYDSQHGNFKGDV-TVEGSDLVVGGKKVRFYTERDPAAI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 43/88 (48.86%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  444 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFK-GTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            S G  K+GINGFGRIGRL                NDPFI   YM+YMFKYDS HG +K   +NV D  TL    K + VF  R+P EI
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEI 90          
The following BLAST results are available for this feature:
BLAST of FC929968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
G3P1_CANGA9.722e-1550.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P_SCHCO1.270e-1448.78Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_HOMAM1.270e-1450.60Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3PT_DANRE1.270e-1453.09Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P_PICPA1.658e-1450.62Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_ONCVO1.658e-1449.41Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3P_HAEIN1.658e-1451.22Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3P2_KLUMA1.658e-1450.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_CRYPA2.166e-1448.78Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3PC_PINSY2.166e-1448.86Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC34002D04EF PostHarvC1 Citrus clementina cDNA clone C34002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929968 ID=FC929968; Name=FC929968; organism=Citrus clementina; type=EST; length=704bp
AGGCGGCAAAAAAAAATAAAAAACAAAAAAAAAATTCTTTTGTTTTTGCA
CTTTAATAAGAGCACATTTCGTTTCATTTCTGGCTTGTGCCTACTGCCTC
CTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGGGTTTTTGC
GAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGGCCTTCTCT
TCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCCGACCTCAC
TTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGCTTTCAGTC
GCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAAGTGGTTCA
TCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAACCCATCAG
AGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACGGAGTGATG
GAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAAGGTTGGTT
TTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCGGTCAATGA
TCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTATGATTCTA
CTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACTCCACCTTA
GAAATTAATGGGAAGCTGATTAAAGTTTTTCAGCAAAGGGACCCGGCAGA
GATC
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