FC929968

Overview
NameFC929968
Unique NameFC929968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 41/82 (50.00%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            ++ INGFGRIGRL                NDPFI   Y AYMFKYDSTHG F G ++  D   L I+GK + VFQ+RDPA +
Sbjct:    3 RIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRFDGEVS-HDGKALIIDGKKVLVFQERDPATL 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 43/82 (52.44%), Postives = 51/82 (62.20%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                ND  +DA+YMAYM KYDSTHG F GT+  V D  L +NGK I+V  +RDPA +
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANL 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 43/82 (52.44%), Postives = 51/82 (62.20%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                ND  +DA+YMAYM KYDSTHG F GT+  V D  L +NGK I+V  +RDPA +
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANL 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 41/82 (50.00%), Postives = 48/82 (58.54%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KV INGFGRIGRL                NDPFI   Y AYMFKYDSTHG +KG +     + L I+G  I VFQ++DPA +
Sbjct:    3 KVAINGFGRIGRLVLRIALQRKALEVVAVNDPFISVDYAAYMFKYDSTHGRYKGEV-TTSGNDLVIDGHKIAVFQEKDPANL 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 41/83 (49.40%), Postives = 50/83 (60.24%), Query Frame = 3
Query:  456 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            +K+GINGFGRIGRL                NDPFI  +YM YMFKYDSTHG+FKG +   +D  L ++GK I VF +  P  I
Sbjct:    1 SKIGINGFGRIGRLVLRAALEMGAQVVAV-NDPFIALEYMVYMFKYDSTHGMFKGEVK-AEDGALVVDGKKITVFNEMKPENI 81          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+  V D  L +NGK I+V  +RDPA +
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANL 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+  V D  L +NGK I+V  +RDPA +
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANL 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+  V D  L +NGK I+V  +RDPA +
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANL 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+  V D  L +NGK I+V  +RDPA +
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANL 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                ND  +DA YMAYM KYDSTHG F GT+  V D  L +NGK I+V  +RDPA +
Sbjct:    4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANL 83          
The following BLAST results are available for this feature:
BLAST of FC929968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
G3P3_KLUMA2.166e-1450.00Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P1_SALTY2.166e-1452.44Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI2.166e-1452.44Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_KLULA2.829e-1450.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_PANVR3.694e-1449.40Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3P1_SHIFL3.694e-1452.44Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_ESCF33.694e-1452.44Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOLI3.694e-1452.44Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL63.694e-1452.44Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO573.694e-1452.44Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC34002D04EF PostHarvC1 Citrus clementina cDNA clone C34002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929968 ID=FC929968; Name=FC929968; organism=Citrus clementina; type=EST; length=704bp
AGGCGGCAAAAAAAAATAAAAAACAAAAAAAAAATTCTTTTGTTTTTGCA
CTTTAATAAGAGCACATTTCGTTTCATTTCTGGCTTGTGCCTACTGCCTC
CTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGGGTTTTTGC
GAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGGCCTTCTCT
TCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCCGACCTCAC
TTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGCTTTCAGTC
GCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAAGTGGTTCA
TCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAACCCATCAG
AGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACGGAGTGATG
GAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAAGGTTGGTT
TTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCGGTCAATGA
TCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTATGATTCTA
CTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACTCCACCTTA
GAAATTAATGGGAAGCTGATTAAAGTTTTTCAGCAAAGGGACCCGGCAGA
GATC
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