FC929968

Overview
NameFC929968
Unique NameFC929968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  462 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            VGINGFGRIGR+                NDPFI+ +YM YMFKYDS HG FKGT+    D  L I GK + V+ +++P++I
Sbjct:    4 VGINGFGRIGRIVFRNALLNPKIQVVAINDPFINLEYMVYMFKYDSVHGRFKGTVE-AKDGKLWIQGKPVIVYGEKNPSDI 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 3
Query:  462 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            VGINGFGRIGRL                NDPFI  +Y +YMFKYDSTHG + G ++  +   + I+GK I+V+Q+RDP  I
Sbjct:    5 VGINGFGRIGRLVLRIALSRKDIQIVAINDPFIAPEYASYMFKYDSTHGRYSGEVS-HEGENIVIDGKKIRVYQERDPVNI 84          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR                 ND   DAK++A++ KYDS HG+FKG++   DDS + ++GK IKVF Q+DP++I
Sbjct:    4 KVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFKGSVEAKDDS-IVVDGKEIKVFAQKDPSQI 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 42/88 (47.73%), Postives = 48/88 (54.55%), Query Frame = 3
Query:  444 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVF-KGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            S G  K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG + K  + V D +TL    K + VF  R+P EI
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALLRDDIELVAVNDPFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEI 90          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 40/82 (48.78%), Postives = 48/82 (58.54%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            ++ INGFGRIGRL                NDPFI   Y AYMFKYDSTHG + G +   DD  + I+GK I V Q+RDPA +
Sbjct:    3 RIAINGFGRIGRLVLRVALSRSNIEVVAVNDPFITTDYAAYMFKYDSTHGRYAGEV-THDDKHIIIDGKKIAVHQERDPANL 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 45/111 (40.54%), Postives = 52/111 (46.85%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDD-----------------------------STLEINGKLIKVFQQRDPAEI 704
            KVG+NGFGRIGRL                NDPFID  YM YMFKYDSTHG FK  I  ++D                               L ING  I +FQ+RDP++I
Sbjct:    3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFKYDSTHGKFKVDIVAINDPFIDLNYMVYMFKYDSTHGKFKGTVKAENGKLVINGHAITIFQERDPSKI 113          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 44/86 (51.16%), Postives = 49/86 (56.98%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINV-VDDSTLEINGK---LIKVFQQRDPAEI 704
            KVGINGFGRIGRL                NDPFI+  YM YMF YDSTHG F G I+    +  +E  GK    IKVF  +DPAEI
Sbjct:    5 KVGINGFGRIGRLALRAAVEKDTVQVVAINDPFIELDYMVYMFNYDSTHGRFNGKISTSAGNLVVEKEGKATHTIKVFNLKDPAEI 90          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = 3
Query:  462 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            VGINGFGRIGRL                NDPF+D +YMAY+FKYDS HG ++G +    D  L I+G  I  F +R+PA I
Sbjct:    4 VGINGFGRIGRLVLRNALQMQILTVVAVNDPFLDVEYMAYLFKYDSVHGRYQGKVE-TKDGKLIIDGHKIAAFAEREPANI 83          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            KVGINGFGRIGR+                ND  +DA+YMAY  KYDSTHG F GT+ V+    L +NGK I+V  +RDPA +
Sbjct:    3 KVGINGFGRIGRVVFRAAQMRPDIEIVGIND-LLDAEYMAYSLKYDSTHGRFDGTVEVI-KGALVVNGKSIRVTSERDPANL 82          
BLAST of FC929968 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 39/82 (47.56%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  459 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFQQRDPAEI 704
            +V INGFGRIGRL                NDPFI   Y AYMFKYDSTHG + G ++  DD  + ++GK I  +Q+RDPA +
Sbjct:    3 RVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS-HDDKHIIVDGKKIATYQERDPANL 83          
The following BLAST results are available for this feature:
BLAST of FC929968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
G3P_LYOSH4.825e-1448.15Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]
G3P_PICCI6.302e-1448.15Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_AQUAE6.302e-1448.78Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
G3PC_GINBI8.230e-1447.73Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_CANGA8.230e-1448.78Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P1_JACOR8.230e-1440.54Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3P1_GLORO8.230e-1451.16Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3P1_AGABI8.230e-1448.15Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3PC_LEIME1.075e-1350.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_YEAST1.075e-1347.56Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionC34002D04EF PostHarvC1 Citrus clementina cDNA clone C34002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929968 ID=FC929968; Name=FC929968; organism=Citrus clementina; type=EST; length=704bp
AGGCGGCAAAAAAAAATAAAAAACAAAAAAAAAATTCTTTTGTTTTTGCA
CTTTAATAAGAGCACATTTCGTTTCATTTCTGGCTTGTGCCTACTGCCTC
CTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGGGTTTTTGC
GAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGGCCTTCTCT
TCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCCGACCTCAC
TTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGCTTTCAGTC
GCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAAGTGGTTCA
TCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAACCCATCAG
AGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACGGAGTGATG
GAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAAGGTTGGTT
TTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCGGTCAATGA
TCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTATGATTCTA
CTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACTCCACCTTA
GAAATTAATGGGAAGCTGATTAAAGTTTTTCAGCAAAGGGACCCGGCAGA
GATC
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