FC929969

Overview
NameFC929969
Unique NameFC929969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SHEB2 (3-dehydroquinate synthase OS=Shewanella baltica (strain OS223) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.701e-25
Identity = 57/121 (47.11%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++VDLG RSYPIYIG  L+   + L +++  K++L+VTN TVAPLYL ++ + +        VE+VILPDGE +K++  L  +F   ++    R    VALGGGVIGDM G+AAA Y RG+
Sbjct:    4 IQVDLGVRSYPIYIGQNLMSDGETLSRYLLKKRILIVTNETVAPLYLKQIQETMASFG---EVESVILPDGEQFKDLAHLDTIFTALLQQNYGRDSVLVALGGGVIGDMTGFAAACYQRGI 121          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_MARMS (3-dehydroquinate synthase OS=Marinomonas sp. (strain MWYL1) GN=aroB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.528e-25
Identity = 56/119 (47.06%), Postives = 79/119 (66.39%), Query Frame = 1
Query:  250 VDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            VDL  RSYPI+IGSG+     L    + GK+V++VTN T+APLYL+ +   L+    +  V+  ILPDGE YK ++T   +    +E++ +R  T +ALGGGV+GDM G+AAA+Y RGV
Sbjct:    6 VDLDDRSYPIFIGSGIRQQKALFDDAIHGKQVMIVTNETIAPLYLESMVSMLS---VDYKVDTCILPDGEVYKTLETYGMIMSALLEAKHNRTTTVIALGGGVVGDMAGFAAATYQRGV 121          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ESCF3 (3-dehydroquinate synthase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=aroB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.528e-25
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G++V++VTN T+APLYLDKV   L +    V V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VIVDSVILPDGEKYKSLTVLDTVFTALLQKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_PHOLL (3-dehydroquinate synthase OS=Photorhabdus luminescens subsp. laumondii GN=aroB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.607e-25
Identity = 60/121 (49.59%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I  GL D P        G++V++VTN T+APLYL KV   L +    + V+ VILPDGE YK++  L  VF   +E+   R  T +ALGGGVIGD+ G+AAA Y RGV
Sbjct:    4 ITVTLGERSYPITIAKGLFDDPSAFAPLKAGQQVMLVTNQTLAPLYLAKVKATLQQAR--IRVDEVILPDGEQYKSLSVLNDVFSALLENSHSRDTTLIALGGGVIGDLTGFAAACYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_AZOSE (3-dehydroquinate synthase OS=Azoarcus sp. (strain EbN1) GN=aroB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.607e-25
Identity = 58/121 (47.93%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG R+YPI+IG G+LD+  L++  ++  +V +VTN+ V PLYL ++  AL      V V  V LPDGE++KN  TL  VFD  + +R +R  T +ALGGGV+GDM G+AAA+Y RG+
Sbjct:    4 LNVALGDRAYPIHIGPGVLDNAGLIRPFLRTARVAIVTNDVVGPLYLARLQRALEADGVRVDV--VTLPDGESHKNWQTLNLVFDMLLATRCERSTTLIALGGGVVGDMAGFAAATYQRGM 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SHIFL (3-dehydroquinate synthase OS=Shigella flexneri GN=aroB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.017e-25
Identity = 61/121 (50.41%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VT+ T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTSETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SHIF8 (3-dehydroquinate synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=aroB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.017e-25
Identity = 61/121 (50.41%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VT+ T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTSETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SHEON (3-dehydroquinate synthase OS=Shewanella oneidensis GN=aroB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.017e-25
Identity = 56/121 (46.28%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++VDLG+RSYPIYIG  L+   + L +++  K++L+VTN TVAPLYL +V D +        + +VIL DGE +K++  L  +F   ++    R    VALGGGVIGDM G+AAA Y RG+
Sbjct:    5 IQVDLGERSYPIYIGQSLMSDSETLSRYLLKKRILIVTNETVAPLYLKQVQDTMASFG---EISSVILSDGEQFKDLTHLDSIFTALLQRNYGRDSVLVALGGGVIGDMTGFAAACYQRGI 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_NITMU (3-dehydroquinate synthase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=aroB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.017e-25
Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = 1
Query:  262 QRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKV-TDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            QR YPI+IG+ +L  P+L+  ++  K+V +VTN TV PLYL+K   D    G  +V +   +LPDGE YKN +TL  +FD  +  R +R    +ALGGGV+GD+ G+AAA+YLRGV
Sbjct:   14 QRGYPIHIGANILTQPELILDYLDQKRVAIVTNTTVGPLYLEKFRADLSVHGMVSVPI---VLPDGEEYKNWETLNLIFDALLTHRCERNTPLIALGGGVVGDLTGFAAATYLRGV 126          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ACIAD (3-dehydroquinate synthase OS=Acinetobacter sp. (strain ADP1) GN=aroB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.859e-25
Identity = 59/121 (48.76%), Postives = 85/121 (70.25%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V+LG R YPI+IGS L +  +LL  +++G++V++VTN T+  LYL    DAL   +  V+V   +LPDGE YKN++ L  +FD  +++  +R CT +ALGGGVIGDM G+AAAS+ RGV
Sbjct:    4 LHVELGDRRYPIFIGSQL-NPQNLLAPYIKGRQVMIVTNTTLEQLYLQHYQDALHALDKQVAV--CVLPDGEKYKNIEHLNLIFDALLKAGFNRDCTVLALGGGVIGDMAGFAAASFQRGV 121          
The following BLAST results are available for this feature:
BLAST of FC929969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
AROB_SHEB22.701e-2547.113-dehydroquinate synthase OS=Shewanella baltica (s... [more]
AROB_MARMS3.528e-2547.063-dehydroquinate synthase OS=Marinomonas sp. (stra... [more]
AROB_ESCF33.528e-2551.243-dehydroquinate synthase OS=Escherichia fergusoni... [more]
AROB_PHOLL4.607e-2549.593-dehydroquinate synthase OS=Photorhabdus luminesc... [more]
AROB_AZOSE4.607e-2547.933-dehydroquinate synthase OS=Azoarcus sp. (strain ... [more]
AROB_SHIFL6.017e-2550.413-dehydroquinate synthase OS=Shigella flexneri GN=... [more]
AROB_SHIF86.017e-2550.413-dehydroquinate synthase OS=Shigella flexneri ser... [more]
AROB_SHEON6.017e-2546.283-dehydroquinate synthase OS=Shewanella oneidensis... [more]
AROB_NITMU6.017e-2548.283-dehydroquinate synthase OS=Nitrosospira multifor... [more]
AROB_ACIAD7.859e-2548.763-dehydroquinate synthase OS=Acinetobacter sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC34002D05EF PostHarvC1 Citrus clementina cDNA clone C34002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929969 ID=FC929969; Name=FC929969; organism=Citrus clementina; type=EST; length=607bp
ATCACGGCCAACTCATTCTCTCCTTCGCTGTCATCCAAACACGCGTCCAA
ACAGCCCGAGTTATATACCTGGTTTCGCAGCCCTAACGCGATTGCGCTTA
AGTCTCCGCCCTTGGCACCGGCTTCTATTGAGTTGAAACGGAACGGCGGT
TTCGTCCTGGGCCAGTATAAGGTGAACTGCAGGATATACGCGAGTAGTGC
GGCTCCGATGATGGATCAAACGGTTAGTAAAGCTCCTACGATTGTTGAGG
TGGATTTGGGACAGCGGAGCTACCCGATTTATATCGGATCCGGACTTCTG
GATCATCCCGACCTGCTCCAAAAGCATGTTCAAGGAAAGAAAGTTCTTGT
GGTTACTAACAACACAGTTGCACCATTGTACCTGGATAAAGTTACTGATG
CTTTGACAAGAGGGAATCCAAATGTTTCAGTTGAGAATGTGATTCTGCCA
GATGGTGAGAATTACAAGAACATGGATACTCTCATGAAAGTCTTTGACAA
GGCCATCGAGTCTCGGCTGGACCGGCGATGTACATTTGTTGCACTTGGAG
GTGGTGTTATTGGTGACATGTGTGGTTATGCTGCAGCCTCTTATCTTCGA
GGTGTTA
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