FC929969

Overview
NameFC929969
Unique NameFC929969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_PECCP (3-dehydroquinate synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=aroB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.341e-24
Identity = 61/121 (50.41%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL D          G++ ++VTN T+APLYLD+V   L   N  V V+ VILPDGE YK++  L +VF   +     R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFDDSASFMPLKAGEQAMLVTNQTLAPLYLDRVRGVLE--NSGVHVDQVILPDGEQYKSLTVLDQVFSALLAKPHGRDTTIVALGGGVIGDLAGFAAASYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SERP5 (3-dehydroquinate synthase OS=Serratia proteamaculans (strain 568) GN=aroB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.751e-24
Identity = 60/121 (49.59%), Postives = 78/121 (64.46%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G++V++VTN T+APLYLD V   L +    V V+ VILPDGE YK++  L +VF   +E    R  T +ALGGGVIGD+ G+AAA Y RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNDPASFMPLKAGEQVMLVTNQTLAPLYLDHVRKVLEQAG--VMVDQVILPDGEQYKSLAVLEQVFSALLEKPHGRDTTLIALGGGVIGDLTGFAAACYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ERWCT (3-dehydroquinate synthase OS=Erwinia carotovora subsp. atroseptica GN=aroB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.751e-24
Identity = 62/121 (51.24%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL D P        G + ++VTN T+APLYLD V   L   N  V V+ VILPDGE YK++  L +VF   +     R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFDDPASFMPLKAGDQAMLVTNQTLAPLYLDCVRGVLE--NHGVHVDQVILPDGEQYKSLTVLDQVFTALLAKPHGRDTTIVALGGGVIGDLAGFAAASYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ACTSZ (3-dehydroquinate synthase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=aroB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.751e-24
Identity = 60/121 (49.59%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V V+L +R YPIYIG GLL    +      G KV++VTN T+APLYL+ VTD L +    VS  +V+L DGE YK + +L ++F   ++    R  T +ALGGGVIGD+ GYAAASY RG+
Sbjct:    4 VNVELKERRYPIYIGEGLLTDSSVYPLK-SGDKVMIVTNETIAPLYLETVTDTLNQIGCQVS--HVLLKDGEKYKTLGSLNQIFTALLQENHGRDTTLIALGGGVIGDVAGYAAASYQRGI 121          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_PSYIN (3-dehydroquinate synthase OS=Psychromonas ingrahamii (strain 37) GN=aroB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24
Identity = 56/121 (46.28%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI IG GLL H +L +  ++GK+V++V+N  VAPLYL    + L     +  ++ +ILPDGE +KN+ T   +    + ++  R  T +ALGGGVIGDM G+AAA Y RGV
Sbjct:    4 IVVALGKRSYPISIGEGLLTHAELFKSAIKGKRVMIVSNEIVAPLYLACCKETLI----DFQIDEIILPDGEKFKNLHTFEIILTALLSNKHARDTTIIALGGGVIGDMAGFAAACYQRGV 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ACTP7 (3-dehydroquinate synthase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=aroB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V V+L +R YPI IG+GLL  P+       G KV++V+N TVA  YL  VT+ L       SV++V++PDGE YK +D+L  +F   +E   +R  T +ALGGGVIGD+ GYAAASY RG+
Sbjct:    4 VNVELKERRYPITIGAGLLGDPNSYSSLKAGDKVMIVSNPTVAAHYLATVTNTLN--GLGCSVDSVLIPDGEKYKTLDSLNMIFTALLEKNHNRDTTLIALGGGVIGDVAGYAAASYQRGI 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ACTP2 (3-dehydroquinate synthase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=aroB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V V+L +R YPI IG+GLL  P+       G KV++V+N TVA  YL  VT+ L       SV++V++PDGE YK +D+L  +F   +E   +R  T +ALGGGVIGD+ GYAAASY RG+
Sbjct:    4 VNVELKERRYPITIGAGLLGDPNSYSSLKAGDKVMIVSNPTVAAHYLATVTNTLN--GLGCSVDSVLIPDGEKYKTLDSLNMIFTALLEKNHNRDTTLIALGGGVIGDVAGYAAASYQRGI 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ACIBC (3-dehydroquinate synthase OS=Acinetobacter baumannii (strain ACICU) GN=aroB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24
Identity = 59/121 (48.76%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V+LG+R YPI+IGS L D   LL+ ++ G++V++V+N TVAPLYL    +AL   +   +V   ILPDGE YK++  L  +FD  +E   +R CT +ALGGGVIGDM G+A+A + RGV
Sbjct:    4 LHVELGERRYPIFIGSQL-DPEQLLEPYIHGQQVMIVSNVTVAPLYLSHYQEALE--SLGKTVATCILPDGEKYKDIQHLNLIFDALLEVGFNRDCTVLALGGGVIGDMAGFASACFQRGV 121          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_PASMU (3-dehydroquinate synthase OS=Pasteurella multocida GN=aroB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.986e-24
Identity = 61/121 (50.41%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V V+L +R YPIYIGSGLL           G KV++VTN T+A  YL +VTD L +      VE+V+L DGE YK +D+L  +F   ++    R  T +ALGGGVIGD+ GYAAASY RGV
Sbjct:    4 VNVELKERRYPIYIGSGLLSDEKCYPLK-SGDKVMIVTNPTIAQYYLSQVTDTLVK--KGCLVEHVVLSDGEQYKTLDSLNLIFTALLQGNHGRDTTIIALGGGVIGDVAGYAAASYQRGV 121          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_NEIMA (3-dehydroquinate synthase OS=Neisseria meningitidis serogroup A GN=aroB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.094e-24
Identity = 58/112 (51.79%), Postives = 76/112 (67.86%), Query Frame = 1
Query:  268 SYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRG 603
            SYPI+IG+GLL     L K   GK+  ++TN TVAPLYL  +  AL      VS  ++ILPDGE +KN  TL  +FD  +++R +R+ T +ALGGGVIGDM G+AAA+Y RG
Sbjct:   12 SYPIFIGNGLLPQAGSLLKPHLGKRAAIITNETVAPLYLGTLQTALDAAG--VSHFSIILPDGEAHKNWQTLNLIFDGLMQNRAERKTTLIALGGGVIGDMTGFAAATYQRG 121          
The following BLAST results are available for this feature:
BLAST of FC929969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
AROB_PECCP1.341e-2450.413-dehydroquinate synthase OS=Pectobacterium caroto... [more]
AROB_SERP51.751e-2449.593-dehydroquinate synthase OS=Serratia proteamacula... [more]
AROB_ERWCT1.751e-2451.243-dehydroquinate synthase OS=Erwinia carotovora su... [more]
AROB_ACTSZ1.751e-2449.593-dehydroquinate synthase OS=Actinobacillus succin... [more]
AROB_PSYIN2.287e-2446.283-dehydroquinate synthase OS=Psychromonas ingraham... [more]
AROB_ACTP72.287e-2448.763-dehydroquinate synthase OS=Actinobacillus pleuro... [more]
AROB_ACTP22.287e-2448.763-dehydroquinate synthase OS=Actinobacillus pleuro... [more]
AROB_ACIBC2.287e-2448.763-dehydroquinate synthase OS=Acinetobacter baumann... [more]
AROB_PASMU2.986e-2450.413-dehydroquinate synthase OS=Pasteurella multocida... [more]
AROB_NEIMA5.094e-2451.793-dehydroquinate synthase OS=Neisseria meningitidi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34002D05EF PostHarvC1 Citrus clementina cDNA clone C34002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929969 ID=FC929969; Name=FC929969; organism=Citrus clementina; type=EST; length=607bp
ATCACGGCCAACTCATTCTCTCCTTCGCTGTCATCCAAACACGCGTCCAA
ACAGCCCGAGTTATATACCTGGTTTCGCAGCCCTAACGCGATTGCGCTTA
AGTCTCCGCCCTTGGCACCGGCTTCTATTGAGTTGAAACGGAACGGCGGT
TTCGTCCTGGGCCAGTATAAGGTGAACTGCAGGATATACGCGAGTAGTGC
GGCTCCGATGATGGATCAAACGGTTAGTAAAGCTCCTACGATTGTTGAGG
TGGATTTGGGACAGCGGAGCTACCCGATTTATATCGGATCCGGACTTCTG
GATCATCCCGACCTGCTCCAAAAGCATGTTCAAGGAAAGAAAGTTCTTGT
GGTTACTAACAACACAGTTGCACCATTGTACCTGGATAAAGTTACTGATG
CTTTGACAAGAGGGAATCCAAATGTTTCAGTTGAGAATGTGATTCTGCCA
GATGGTGAGAATTACAAGAACATGGATACTCTCATGAAAGTCTTTGACAA
GGCCATCGAGTCTCGGCTGGACCGGCGATGTACATTTGTTGCACTTGGAG
GTGGTGTTATTGGTGACATGTGTGGTTATGCTGCAGCCTCTTATCTTCGA
GGTGTTA
back to top