FC929969

Overview
NameFC929969
Unique NameFC929969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_RALSO (3-dehydroquinate synthase OS=Ralstonia solanacearum GN=aroB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.252e-30
Identity = 64/121 (52.89%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V+VDLG+R+YPI+IG+GLL   +L   H++G + ++VTN TVAPLY  +V  A+   +   +V+ V+LPDGE++K  +TL ++FD  + S  DR+ T VALGGGVIGDM G+AAASY+RGV
Sbjct:    4 VDVDLGERAYPIHIGTGLLSQAELFAPHIRGTRAVIVTNETVAPLYAARVEAAIR--SLGKTVDMVVLPDGESFKTWETLNRIFDALLASGADRKTTLVALGGGVIGDMTGFAAASYMRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_RALME (3-dehydroquinate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=aroB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.252e-30
Identity = 65/121 (53.72%), Postives = 86/121 (71.07%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            +EVDLG RSYPI+IGSGLLD  DLL  HV+G+  ++VTN TV PLY  +V   L       +V  V+LPDGE +K+ +TL  +FD  +++  DR+ T +ALGGGV+GDM G+AAA Y+RGV
Sbjct:    4 LEVDLGTRSYPIHIGSGLLDRADLLAPHVRGQHAVIVTNETVGPLYAARVEAVLA--GLGKTVRTVVLPDGERFKHWETLNLIFDALLQAGADRKTTLIALGGGVVGDMTGFAAACYMRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_NITOC (3-dehydroquinate synthase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=aroB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.252e-30
Identity = 67/121 (55.37%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V+VDL +RSYPIYIGSGLL    LL KH+ G +V+VVTN TVAPLYLD     L +G  +     +ILPDGE +K +  L ++FD  ++    R CT +ALGGGVIGDM G+AAA Y RGV
Sbjct:    4 VQVDLQERSYPIYIGSGLLKQNSLLAKHIVGSEVMVVTNETVAPLYLD----TLLKGLKDYRCAEIILPDGEQHKTLAVLQQIFDDLLKVPFSRHCTVIALGGGVIGDMAGFAAACYQRGV 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_METCA (3-dehydroquinate synthase OS=Methylococcus capsulatus GN=aroB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.635e-30
Identity = 66/121 (54.55%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V+LG+R YPIYIG GLL HPDL+Q H+ G +VLVVTN  VAPLYLD++  +L          +V+LPDGE +K +D+ M VFD  +  R  R    VALGGGVIGD+ G+AAA Y RGV
Sbjct:    4 LHVELGERGYPIYIGRGLLGHPDLIQAHLPGGQVLVVTNEVVAPLYLDRMLASLA----GKDTGSVVLPDGEAHKTLDSAMAVFDALLARRFGRNAAIVALGGGVIGDLAGFAAACYQRGV 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURCM (3-dehydroquinate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=aroB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.212e-30
Identity = 67/121 (55.37%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG+R+YPI+IG+GL+   DL   H+ G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +  R DR+ T VALGGGVIGDM G+AAA Y+RGV
Sbjct:    4 VNVDLGERAYPIHIGAGLIGRTDLFAPHITGSSVTIVTNTTVDPLYGDALRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLTERADRKTTLVALGGGVIGDMTGFAAACYMRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SHEAM (3-dehydroquinate synthase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=aroB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.060e-29
Identity = 66/121 (54.55%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++VDL  RSYPI+IG  L +  +L    V GKKVLVV+N T+APLYLDK++  L+     V+  +VILPDGE YK +D L ++FD  +E    R C  VALGGGVIGDM G+AAA Y RGV
Sbjct:    4 IQVDLANRSYPIHIGPNLFEDQELFAPVVSGKKVLVVSNETIAPLYLDKISATLSARAAQVA--SVILPDGEQYKTLDYLNEIFDALLEGNFARDCVLVALGGGVIGDMTGFAAACYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURM1 (3-dehydroquinate synthase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=aroB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.384e-29
Identity = 67/121 (55.37%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG R+YPI+IG+GL+   +L   H++G  V VVTN TV PLY D +  AL     +VS   V+LPDGE YKN +TL  +FD  +  R DR+ T VALGGGVIGDM G+AAA Y+RGV
Sbjct:    4 VNVDLGDRAYPIHIGAGLIGRAELFAPHIKGSSVTVVTNTTVDPLYGDALRAALAPLGKHVST--VVLPDGEAYKNWETLNLIFDGLLGERADRKTTLVALGGGVIGDMTGFAAACYMRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURA4 (3-dehydroquinate synthase OS=Burkholderia ambifaria (strain MC40-6) GN=aroB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.808e-29
Identity = 66/121 (54.55%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG+R+YPI+IG+GL+   +L   H+ G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +  R DR+ T VALGGGVIGDM G+AAA Y+RGV
Sbjct:    4 VNVDLGERAYPIHIGAGLIGRTELFAPHITGSSVTIVTNTTVDPLYGDALRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLTERADRKTTLVALGGGVIGDMTGFAAACYMRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_THIDA (3-dehydroquinate synthase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=aroB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.361e-29
Identity = 67/119 (56.30%), Postives = 82/119 (68.91%), Query Frame = 1
Query:  250 VDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            VDLG RSYPI+IG+ LL   DL+  H+  K+V+VVTN TV PLYL ++  AL      V V  V+LPDGE YKN +TL  VFD  +  R +R+ T +ALGGGVIGDM G+AAA Y RGV
Sbjct:    6 VDLGDRSYPIHIGAALLTRADLVLPHLAQKRVMVVTNTTVGPLYLAQLKAALEAAG--VRVAEVVLPDGEAYKNWETLNLVFDALLRERAERKTTLIALGGGVIGDMTGFAAACYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURS3 (3-dehydroquinate synthase OS=Burkholderia sp. (strain 383) GN=aroB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.361e-29
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG R+YPI+IG+GL+   +L   H++G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +  R DR+ T VALGGGV+GDM G+AAA Y+RGV
Sbjct:    4 VNVDLGDRAYPIHIGAGLIGRAELFAPHIKGSSVTIVTNTTVDPLYGDALRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLTDRADRKTTLVALGGGVVGDMTGFAAACYMRGV 122          
The following BLAST results are available for this feature:
BLAST of FC929969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
AROB_RALSO1.252e-3052.893-dehydroquinate synthase OS=Ralstonia solanacearu... [more]
AROB_RALME1.252e-3053.723-dehydroquinate synthase OS=Ralstonia metallidura... [more]
AROB_NITOC1.252e-3055.373-dehydroquinate synthase OS=Nitrosococcus oceani ... [more]
AROB_METCA1.635e-3054.553-dehydroquinate synthase OS=Methylococcus capsula... [more]
AROB_BURCM6.212e-3055.373-dehydroquinate synthase OS=Burkholderia ambifari... [more]
AROB_SHEAM1.060e-2954.553-dehydroquinate synthase OS=Shewanella amazonensi... [more]
AROB_BURM11.384e-2955.373-dehydroquinate synthase OS=Burkholderia multivor... [more]
AROB_BURA41.808e-2954.553-dehydroquinate synthase OS=Burkholderia ambifari... [more]
AROB_THIDA2.361e-2956.303-dehydroquinate synthase OS=Thiobacillus denitrif... [more]
AROB_BURS32.361e-2953.723-dehydroquinate synthase OS=Burkholderia sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC34002D05EF PostHarvC1 Citrus clementina cDNA clone C34002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929969 ID=FC929969; Name=FC929969; organism=Citrus clementina; type=EST; length=607bp
ATCACGGCCAACTCATTCTCTCCTTCGCTGTCATCCAAACACGCGTCCAA
ACAGCCCGAGTTATATACCTGGTTTCGCAGCCCTAACGCGATTGCGCTTA
AGTCTCCGCCCTTGGCACCGGCTTCTATTGAGTTGAAACGGAACGGCGGT
TTCGTCCTGGGCCAGTATAAGGTGAACTGCAGGATATACGCGAGTAGTGC
GGCTCCGATGATGGATCAAACGGTTAGTAAAGCTCCTACGATTGTTGAGG
TGGATTTGGGACAGCGGAGCTACCCGATTTATATCGGATCCGGACTTCTG
GATCATCCCGACCTGCTCCAAAAGCATGTTCAAGGAAAGAAAGTTCTTGT
GGTTACTAACAACACAGTTGCACCATTGTACCTGGATAAAGTTACTGATG
CTTTGACAAGAGGGAATCCAAATGTTTCAGTTGAGAATGTGATTCTGCCA
GATGGTGAGAATTACAAGAACATGGATACTCTCATGAAAGTCTTTGACAA
GGCCATCGAGTCTCGGCTGGACCGGCGATGTACATTTGTTGCACTTGGAG
GTGGTGTTATTGGTGACATGTGTGGTTATGCTGCAGCCTCTTATCTTCGA
GGTGTTA
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