FC929969

Overview
NameFC929969
Unique NameFC929969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURVG (3-dehydroquinate synthase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=aroB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.083e-29
Identity = 65/121 (53.72%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG R+YPI+IG+GL+   +L   H+ G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +  R DR+ T +ALGGGVIGDM G+AAA Y+RGV
Sbjct:    4 VNVDLGDRAYPIHIGAGLIGRTELFAPHINGSSVTIVTNTTVDPLYGDALRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLTERADRKTTLIALGGGVIGDMTGFAAACYMRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURCJ (3-dehydroquinate synthase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=aroB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.971e-29
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG R+YPI+IG+GL+   +L   H++G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +    DR+ T VALGGGV+GDM G+AAA Y+RGV
Sbjct:    4 VNVDLGDRAYPIHIGAGLIGRTELFAPHIKGSSVTIVTNTTVDPLYGDALRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLTDHADRKTTLVALGGGVVGDMTGFAAACYMRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURCH (3-dehydroquinate synthase OS=Burkholderia cenocepacia (strain HI2424) GN=aroB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.971e-29
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG R+YPI+IG+GL+   +L   H++G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +    DR+ T VALGGGV+GDM G+AAA Y+RGV
Sbjct:    4 VNVDLGDRAYPIHIGAGLIGRTELFAPHIKGSSVTIVTNTTVDPLYGDALRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLTDHADRKTTLVALGGGVVGDMTGFAAACYMRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURCC (3-dehydroquinate synthase OS=Burkholderia cenocepacia (strain MC0-3) GN=aroB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.971e-29
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG R+YPI+IG+GL+   +L   H++G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +    DR+ T VALGGGV+GDM G+AAA Y+RGV
Sbjct:    4 VNVDLGDRAYPIHIGAGLIGRTELFAPHIKGSSVTIVTNTTVDPLYGDALRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLTDHADRKTTLVALGGGVVGDMTGFAAACYMRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURCA (3-dehydroquinate synthase OS=Burkholderia cenocepacia (strain AU 1054) GN=aroB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.971e-29
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG R+YPI+IG+GL+   +L   H++G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +    DR+ T VALGGGV+GDM G+AAA Y+RGV
Sbjct:    4 VNVDLGDRAYPIHIGAGLIGRTELFAPHIKGSSVTIVTNTTVDPLYGDALRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLTDHADRKTTLVALGGGVVGDMTGFAAACYMRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_RALEJ (3-dehydroquinate synthase OS=Ralstonia eutropha (strain JMP134) GN=aroB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 63/121 (52.07%), Postives = 86/121 (71.07%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++VDLG+RSYPI+IG+GLL + +LL+ HV+G+  ++VTN TV PLY  +V  +L      V V  V LPDGE +K  +TL  +FD  + +  DR+ T VALGGGV+GDM G+AAA Y+RGV
Sbjct:    4 LQVDLGERSYPIHIGTGLLGNAELLRPHVRGQHAVIVTNETVGPLYAARVEASLKELGKTVRV--VTLPDGEAFKQWETLNLIFDALLSAGADRKTTLVALGGGVVGDMTGFAAACYMRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_PSEA7 (3-dehydroquinate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=aroB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + VDLG+RSYPIYIG  LL        H+ G++V V++N TVAPLYL+ +  AL        V  V+LPDGE YK  +TL  +FD  ++ R DR+ T +ALGGGVIGDM G+AAA Y RGV
Sbjct:    4 LNVDLGERSYPIYIGENLLGDAQWFAPHIVGRRVAVISNETVAPLYLETLLGALE----GREVTRVVLPDGEAYKQWETLQSIFDALLQDRHDRKTTLIALGGGVIGDMAGFAAACYQRGV 120
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURPS (3-dehydroquinate synthase OS=Burkholderia pseudomallei GN=aroB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG+R+YPI+IG+ L+   +L   H+ G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +E   DR+ T +ALGGGVIGDM G+AAA Y+RGV
Sbjct:    4 VNVDLGERAYPIHIGADLIGRTELFAPHIAGASVTIVTNTTVEPLYGDTLRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLEQHADRKTTLIALGGGVIGDMTGFAAACYMRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURP6 (3-dehydroquinate synthase OS=Burkholderia pseudomallei (strain 668) GN=aroB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG+R+YPI+IG+ L+   +L   H+ G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +E   DR+ T +ALGGGVIGDM G+AAA Y+RGV
Sbjct:    4 VNVDLGERAYPIHIGADLIGRTELFAPHIAGASVTIVTNTTVEPLYGDTLRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLEQHADRKTTLIALGGGVIGDMTGFAAACYMRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURP1 (3-dehydroquinate synthase OS=Burkholderia pseudomallei (strain 1710b) GN=aroB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG+R+YPI+IG+ L+   +L   H+ G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +E   DR+ T +ALGGGVIGDM G+AAA Y+RGV
Sbjct:    4 VNVDLGERAYPIHIGADLIGRTELFAPHIAGASVTIVTNTTVEPLYGDTLRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLEQHADRKTTLIALGGGVIGDMTGFAAACYMRGV 122
The following BLAST results are available for this feature:
BLAST of FC929969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
AROB_BURVG3.083e-2953.723-dehydroquinate synthase OS=Burkholderia vietnami... [more]
AROB_BURCJ8.971e-2952.893-dehydroquinate synthase OS=Burkholderia cepacia ... [more]
AROB_BURCH8.971e-2952.893-dehydroquinate synthase OS=Burkholderia cenocepa... [more]
AROB_BURCC8.971e-2952.893-dehydroquinate synthase OS=Burkholderia cenocepa... [more]
AROB_BURCA8.971e-2952.893-dehydroquinate synthase OS=Burkholderia cenocepa... [more]
AROB_RALEJ1.172e-2852.073-dehydroquinate synthase OS=Ralstonia eutropha (s... [more]
AROB_PSEA71.172e-2852.073-dehydroquinate synthase OS=Pseudomonas aeruginos... [more]
AROB_BURPS1.172e-2852.893-dehydroquinate synthase OS=Burkholderia pseudoma... [more]
AROB_BURP61.172e-2852.893-dehydroquinate synthase OS=Burkholderia pseudoma... [more]
AROB_BURP11.172e-2852.893-dehydroquinate synthase OS=Burkholderia pseudoma... [more]

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Properties
Property NameValue
Genbank descriptionC34002D05EF PostHarvC1 Citrus clementina cDNA clone C34002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929969 ID=FC929969; Name=FC929969; organism=Citrus clementina; type=EST; length=607bp
ATCACGGCCAACTCATTCTCTCCTTCGCTGTCATCCAAACACGCGTCCAA
ACAGCCCGAGTTATATACCTGGTTTCGCAGCCCTAACGCGATTGCGCTTA
AGTCTCCGCCCTTGGCACCGGCTTCTATTGAGTTGAAACGGAACGGCGGT
TTCGTCCTGGGCCAGTATAAGGTGAACTGCAGGATATACGCGAGTAGTGC
GGCTCCGATGATGGATCAAACGGTTAGTAAAGCTCCTACGATTGTTGAGG
TGGATTTGGGACAGCGGAGCTACCCGATTTATATCGGATCCGGACTTCTG
GATCATCCCGACCTGCTCCAAAAGCATGTTCAAGGAAAGAAAGTTCTTGT
GGTTACTAACAACACAGTTGCACCATTGTACCTGGATAAAGTTACTGATG
CTTTGACAAGAGGGAATCCAAATGTTTCAGTTGAGAATGTGATTCTGCCA
GATGGTGAGAATTACAAGAACATGGATACTCTCATGAAAGTCTTTGACAA
GGCCATCGAGTCTCGGCTGGACCGGCGATGTACATTTGTTGCACTTGGAG
GTGGTGTTATTGGTGACATGTGTGGTTATGCTGCAGCCTCTTATCTTCGA
GGTGTTA
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