FC929969

Overview
NameFC929969
Unique NameFC929969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BRUSU (3-dehydroquinate synthase OS=Brucella suis GN=aroB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 1
Query:  220 TVSKAPTIVEVDLGQRSYPIYIGSGLLDHP-DLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            TV+ + T V V LG RSY I IG GL++   + + K ++G +V +VT+  VA ++L+++  +  R    +    VI+  GE  K+  TL  V +  + ++L+R    VALGGGV+GD+ G+ A    RG+
Sbjct:    6 TVADSVT-VPVSLGDRSYDILIGKGLVERAGEEVAKRLKGVRVAIVTDENVAAVHLERLQASFARAG--IDSTPVIVAPGEKSKSFATLETVTNAILAAKLERGDAVVALGGGVVGDLSGFVAGIVRRGM 132          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BRUSI (3-dehydroquinate synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 1
Query:  220 TVSKAPTIVEVDLGQRSYPIYIGSGLLDHP-DLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            TV+ + T V V LG RSY I IG GL++   + + K ++G +V +VT+  VA ++L+++  +  R    +    VI+  GE  K+  TL  V +  + ++L+R    VALGGGV+GD+ G+ A    RG+
Sbjct:    6 TVADSVT-VPVSLGDRSYDILIGKGLVERAGEEVAKRLKGVRVAIVTDENVAAVHLERLQASFARAG--IDSTPVIVAPGEKSKSFATLETVTNAILAAKLERGDAVVALGGGVVGDLSGFVAGIVRRGM 132          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BRUO2 (3-dehydroquinate synthase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 1
Query:  220 TVSKAPTIVEVDLGQRSYPIYIGSGLLDHP-DLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            TV+ + T V V LG RSY I IG GL++   + + K ++G +V +VT+  VA ++L+++  +  R    +    VI+  GE  K+  TL  V +  + ++L+R    VALGGGV+GD+ G+ A    RG+
Sbjct:    6 TVADSVT-VPVSLGDRSYDILIGKGLVERAGEEVAKRLKGVRVAIVTDENVAAVHLERLQASFARAG--IDSTPVIVAPGEKSKSFATLETVTNAILAAKLERGDAVVALGGGVVGDLSGFVAGIVRRGM 132          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BRUME (3-dehydroquinate synthase OS=Brucella melitensis GN=aroB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 1
Query:  220 TVSKAPTIVEVDLGQRSYPIYIGSGLLDHP-DLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            TV+ + T V V LG RSY I IG GL++   + + K ++G +V +VT+  VA ++L+++  +  R    +    VI+  GE  K+  TL  V +  + ++L+R    VALGGGV+GD+ G+ A    RG+
Sbjct:    6 TVADSVT-VPVSLGDRSYDILIGKGLVERAGEEVAKRLKGVRVAIVTDENVAAVHLERLQASFARAG--IDSTPVIVAPGEKSKSFATLETVTNAILAAKLERGDAVVALGGGVVGDLSGFVAGIVRRGM 132          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BRUMB (3-dehydroquinate synthase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 1
Query:  220 TVSKAPTIVEVDLGQRSYPIYIGSGLLDHP-DLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            TV+ + T V V LG RSY I IG GL++   + + K ++G +V +VT+  VA ++L+++  +  R    +    VI+  GE  K+  TL  V +  + ++L+R    VALGGGV+GD+ G+ A    RG+
Sbjct:    6 TVADSVT-VPVSLGDRSYDILIGKGLVERAGEEVAKRLKGVRVAIVTDENVAAVHLERLQASFARAG--IDSTPVIVAPGEKSKSFATLETVTNAILAAKLERGDAVVALGGGVVGDLSGFVAGIVRRGM 132          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BRUC2 (3-dehydroquinate synthase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 1
Query:  220 TVSKAPTIVEVDLGQRSYPIYIGSGLLDHP-DLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            TV+ + T V V LG RSY I IG GL++   + + K ++G +V +VT+  VA ++L+++  +  R    +    VI+  GE  K+  TL  V +  + ++L+R    VALGGGV+GD+ G+ A    RG+
Sbjct:    6 TVADSVT-VPVSLGDRSYDILIGKGLVERAGEEVAKRLKGVRVAIVTDENVAAVHLERLQASFARAG--IDSTPVIVAPGEKSKSFATLETVTNAILAAKLERGDAVVALGGGVVGDLSGFVAGIVRRGM 132          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_RHOSK (3-dehydroquinate synthase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 46/122 (37.70%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDL-LQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V V+LG R+Y + IG GL+      +   ++  KV ++T+ TVA L+LD    AL      ++   + LP GE  K      +  +  +E +++RR   VALGGGVIGD+ G+AAA   RGV
Sbjct:    6 VRVELGARAYEVRIGPGLIARAGAEIAPLLRRPKVAILTDETVAGLHLDPFRQALVEAG--IASSALALPAGEATKGWPQFARAVEWLLEEKVERRDVVVALGGGVIGDLAGFAAAVLRRGV 125          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_RHOS4 (3-dehydroquinate synthase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 46/122 (37.70%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDL-LQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V V+LG R+Y + IG GL+      +   ++  KV ++T+ TVA L+LD    AL      ++   + LP GE  K      +  +  +E +++RR   VALGGGVIGD+ G+AAA   RGV
Sbjct:    6 VRVELGARAYEVRIGPGLIARAGAEIAPLLRRPKVAILTDETVAGLHLDPFRQALAEAG--IASSALALPAGEATKGWPQFARAVEWLLEEKVERRDVVVALGGGVIGDLAGFAAAVLRRGV 125          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_RHOS1 (3-dehydroquinate synthase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 46/122 (37.70%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDL-LQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V V+LG R+Y + IG GL+      +   ++  KV ++T+ TVA L+LD    AL      ++   + LP GE  K      +  +  +E +++RR   VALGGGVIGD+ G+AAA   RGV
Sbjct:    6 VRVELGARAYEVRIGPGLIARAGAEIAPLLRRPKVAILTDETVAGLHLDPFRQALAEAG--IASSALALPAGEATKGWPQFARAVEWLLEEKVERRDVVVALGGGVIGDLAGFAAAVLRRGV 125          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_OCEIH (3-dehydroquinate synthase OS=Oceanobacillus iheyensis GN=aroB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 46/124 (37.10%), Postives = 72/124 (58.06%), Query Frame = 1
Query:  250 VDLGQRSYPIYIGSGLLDHPDLLQKHVQGK--KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVI---LPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V   Q SYPIYIG GL      L  +++ K  K+ ++T++ V   YL  V      G P  S EN+    +P GE+ K++D   ++  +A+++ LDR    +ALGGGV+GD+ G  AA+++RG+
Sbjct:    6 VQSNQSSYPIYIGQGLRYQ---LSSYIEKKYTKLFIITDDQVGSRYLKDVL----HGYP--SEENICHFTIPSGESSKSIDNFYRLQTEALQNGLDRHSLIIALGGGVVGDLAGLVAATFMRGI 120          
The following BLAST results are available for this feature:
BLAST of FC929969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
AROB_BRUSU1.065e-1336.153-dehydroquinate synthase OS=Brucella suis GN=aroB... [more]
AROB_BRUSI1.065e-1336.153-dehydroquinate synthase OS=Brucella suis (strain... [more]
AROB_BRUO21.065e-1336.153-dehydroquinate synthase OS=Brucella ovis (strain... [more]
AROB_BRUME1.065e-1336.153-dehydroquinate synthase OS=Brucella melitensis G... [more]
AROB_BRUMB1.065e-1336.153-dehydroquinate synthase OS=Brucella melitensis b... [more]
AROB_BRUC21.065e-1336.153-dehydroquinate synthase OS=Brucella canis (strai... [more]
AROB_RHOSK1.390e-1337.703-dehydroquinate synthase OS=Rhodobacter sphaeroid... [more]
AROB_RHOS41.390e-1337.703-dehydroquinate synthase OS=Rhodobacter sphaeroid... [more]
AROB_RHOS11.390e-1337.703-dehydroquinate synthase OS=Rhodobacter sphaeroid... [more]
AROB_OCEIH1.390e-1337.103-dehydroquinate synthase OS=Oceanobacillus iheyen... [more]

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Properties
Property NameValue
Genbank descriptionC34002D05EF PostHarvC1 Citrus clementina cDNA clone C34002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929969 ID=FC929969; Name=FC929969; organism=Citrus clementina; type=EST; length=607bp
ATCACGGCCAACTCATTCTCTCCTTCGCTGTCATCCAAACACGCGTCCAA
ACAGCCCGAGTTATATACCTGGTTTCGCAGCCCTAACGCGATTGCGCTTA
AGTCTCCGCCCTTGGCACCGGCTTCTATTGAGTTGAAACGGAACGGCGGT
TTCGTCCTGGGCCAGTATAAGGTGAACTGCAGGATATACGCGAGTAGTGC
GGCTCCGATGATGGATCAAACGGTTAGTAAAGCTCCTACGATTGTTGAGG
TGGATTTGGGACAGCGGAGCTACCCGATTTATATCGGATCCGGACTTCTG
GATCATCCCGACCTGCTCCAAAAGCATGTTCAAGGAAAGAAAGTTCTTGT
GGTTACTAACAACACAGTTGCACCATTGTACCTGGATAAAGTTACTGATG
CTTTGACAAGAGGGAATCCAAATGTTTCAGTTGAGAATGTGATTCTGCCA
GATGGTGAGAATTACAAGAACATGGATACTCTCATGAAAGTCTTTGACAA
GGCCATCGAGTCTCGGCTGGACCGGCGATGTACATTTGTTGCACTTGGAG
GTGGTGTTATTGGTGACATGTGTGGTTATGCTGCAGCCTCTTATCTTCGA
GGTGTTA
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