FC929969

Overview
NameFC929969
Unique NameFC929969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_HELPJ (3-dehydroquinate synthase OS=Helicobacter pylori J99 GN=aroB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 38/119 (31.93%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  250 VDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + L ++SY +++G    + P++  K    +K L+++++ VA L+L  + + L      + V   ++  GE YKN  +L ++ + A E +L+R    +ALGGGVI DM G+A++ Y RG+
Sbjct:    6 IPLKEKSYKVFLG----ELPEIKLK----QKALIISDSIVAGLHLPYLLERLNA----LEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYFRGI 112          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_GLOVI (3-dehydroquinate synthase OS=Gloeobacter violaceus GN=aroB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 43/122 (35.25%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V L   SY I I  G L+   + L +  +  + LVV+N  V   Y  +V  +L          +V +P GE +K++ ++ +++  A+E RL+R    VALGGGV+GDM G+AA+++LRG+
Sbjct:    4 IPVALPMDSYDICIDEGGLERLGEYLAELGKVNRALVVSNPVVLRHYGARVVRSLNAAG--FETASVTVPAGERHKHLRSVERIYQAALEHRLERSSLIVALGGGVVGDMAGFAASTWLRGI 123          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_STRT2 (3-dehydroquinate synthase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=aroB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHV-QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            +EV+L Q  Y I I  G L       K + + +K+ ++T+N V  LY +KV  +L      V V + +  +GE  KN+ T+ K ++  I++ + R    VALGGGV+GD+ G+ A++Y+RG+
Sbjct:    3 LEVNLKQNPYDIIIEKGALKGVGQWVKSLWEPQKIALITDNHVRGLYAEKVKLSLENEGFEVVVFDFL--EGEASKNLKTVNKAYEFLIKNGMTRSDGIVALGGGVVGDLAGFVASTYMRGI 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_STRT1 (3-dehydroquinate synthase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=aroB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHV-QGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            +EV+L Q  Y I I  G L       K + + +K+ ++T+N V  LY +KV  +L      V V + +  +GE  KN+ T+ K ++  I++ + R    VALGGGV+GD+ G+ A++Y+RG+
Sbjct:    3 LEVNLKQNPYDIIIEKGALKGVGQWVKSLWEPQKIALITDNHVRGLYAEKVKLSLENEGFEVVVFDFL--EGEASKNLKTVNKAYEFLIKNGMTRSDGIVALGGGVVGDLAGFVASTYMRGI 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_HELPG (3-dehydroquinate synthase OS=Helicobacter pylori (strain G27) GN=aroB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 37/121 (30.58%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + + L ++SY +++G    + P++  K    +K L+++++ V+ L+L  + + L      + V   ++  GE YKN  +L ++ + A E +L+R    +ALGGGVI DM G+A++ Y RG+
Sbjct:    4 IVIPLKEKSYKVFLG----ELPEIKLK----QKALIISDSIVSGLHLSYLLERLKA----LEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYFRGI 112          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BRAJA (3-dehydroquinate synthase OS=Bradyrhizobium japonicum GN=aroB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 44/125 (35.20%), Postives = 68/125 (54.40%), Query Frame = 1
Query:  235 PTIVEVDLGQRSYPIYIGSGLLDH-PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            P  V+V LG R+Y I IG G+L    + +     G +  VVT+ TVA  +L+    +L      +    +++ +GE  K    L KV +  I ++++R    +ALGGGV+GD+ G+AAA   RGV
Sbjct:   10 PVNVDVALGDRAYDIVIGRGVLASLGERVAALRPGVRTAVVTDRTVAKHWLEPTEASLAAAG--IPTSRIVVEEGEISKTYAGLEKVSEALIAAKIERNDLVIALGGGVVGDLAGFAAAILRRGV 132          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BACA2 (3-dehydroquinate synthase OS=Bacillus amyloliquefaciens (strain FZB42) GN=aroB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 40/123 (32.52%), Postives = 66/123 (53.66%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGK--KVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            +EV     +YP+YIG G+      L   +     K+L++ +  V  LY D++   L    P   V+ VI+P GE  K++    ++  +AI   +DR    +A GGGV GD+ G+ AA+++RG+
Sbjct:    4 LEVRTASSAYPVYIGEGIRKQAAALLSSLNRPLTKILLIIDAEVDRLYGDEMFRLLNETWP---VKKVIVPSGEEAKSLKEYERIQTEAIAFHMDRSSCMIAFGGGVTGDLAGFCAATFMRGI 123          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SULNB (3-dehydroquinate synthase OS=Sulfurovum sp. (strain NBC37-1) GN=aroB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  310 DLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            D L +     KV VVTN TVA  +L  +   +        +E + +PDGE YK ++T+  + ++  E + DR+   +A GGGVIGDM G+ A+ Y RG+
Sbjct:   20 DALPQLTFDTKVAVVTNPTVAGYHLQTLLAHIKAPQ----LEVITVPDGEEYKTLETVETILNELFEHKFDRKSLLIAFGGGVIGDMTGFTASLYQRGI 114          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_METI4 (3-dehydroquinate synthase OS=Methylacidiphilum infernorum (isolate V4) GN=aroB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 37/121 (30.58%), Postives = 66/121 (54.55%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++V    R+Y + IG GLL     L + ++ +K + +  +     Y   + D+L   +     + + +P GE  K+  TL  +     E +LDR+ T +A+GGGV+GD+ G+AA+ +LRG+
Sbjct:    8 IKVSTPSRNYFVRIGKGLLQEGGSLARQLKLEKKIALLFDQAVETYATTLIDSLKAHD--FEPQALAIPSGEGSKSFKTLETIVTALAEMKLDRKSTIIAVGGGVLGDVAGFAASIFLRGI 126          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_HELP2 (3-dehydroquinate synthase OS=Helicobacter pylori (strain P12) GN=aroB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 38/121 (31.40%), Postives = 70/121 (57.85%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + + L ++SY +++G    + P++  K    +K L+++++ VA L+L  +   L      + V   ++  GE YKN  +L ++ + A E +L+R    +ALGGGVI DM G+A++ Y RG+
Sbjct:    4 IVIPLKEKSYKVFLG----ELPEIELK----QKALIISDSIVAGLHLSYLLKRLKA----LEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYFRGI 112          
The following BLAST results are available for this feature:
BLAST of FC929969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
AROB_HELPJ4.473e-1231.933-dehydroquinate synthase OS=Helicobacter pylori J... [more]
AROB_GLOVI4.473e-1235.253-dehydroquinate synthase OS=Gloeobacter violaceus... [more]
AROB_STRT27.630e-1235.253-dehydroquinate synthase OS=Streptococcus thermop... [more]
AROB_STRT17.630e-1235.253-dehydroquinate synthase OS=Streptococcus thermop... [more]
AROB_HELPG7.630e-1230.583-dehydroquinate synthase OS=Helicobacter pylori (... [more]
AROB_BRAJA7.630e-1235.203-dehydroquinate synthase OS=Bradyrhizobium japoni... [more]
AROB_BACA27.630e-1232.523-dehydroquinate synthase OS=Bacillus amyloliquefa... [more]
AROB_SULNB9.965e-1237.373-dehydroquinate synthase OS=Sulfurovum sp. (strai... [more]
AROB_METI49.965e-1230.583-dehydroquinate synthase OS=Methylacidiphilum inf... [more]
AROB_HELP29.965e-1231.403-dehydroquinate synthase OS=Helicobacter pylori (... [more]

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Properties
Property NameValue
Genbank descriptionC34002D05EF PostHarvC1 Citrus clementina cDNA clone C34002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929969 ID=FC929969; Name=FC929969; organism=Citrus clementina; type=EST; length=607bp
ATCACGGCCAACTCATTCTCTCCTTCGCTGTCATCCAAACACGCGTCCAA
ACAGCCCGAGTTATATACCTGGTTTCGCAGCCCTAACGCGATTGCGCTTA
AGTCTCCGCCCTTGGCACCGGCTTCTATTGAGTTGAAACGGAACGGCGGT
TTCGTCCTGGGCCAGTATAAGGTGAACTGCAGGATATACGCGAGTAGTGC
GGCTCCGATGATGGATCAAACGGTTAGTAAAGCTCCTACGATTGTTGAGG
TGGATTTGGGACAGCGGAGCTACCCGATTTATATCGGATCCGGACTTCTG
GATCATCCCGACCTGCTCCAAAAGCATGTTCAAGGAAAGAAAGTTCTTGT
GGTTACTAACAACACAGTTGCACCATTGTACCTGGATAAAGTTACTGATG
CTTTGACAAGAGGGAATCCAAATGTTTCAGTTGAGAATGTGATTCTGCCA
GATGGTGAGAATTACAAGAACATGGATACTCTCATGAAAGTCTTTGACAA
GGCCATCGAGTCTCGGCTGGACCGGCGATGTACATTTGTTGCACTTGGAG
GTGGTGTTATTGGTGACATGTGTGGTTATGCTGCAGCCTCTTATCTTCGA
GGTGTTA
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