FC929969

Overview
NameFC929969
Unique NameFC929969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURP0 (3-dehydroquinate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=aroB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG+R+YPI+IG+ L+   +L   H+ G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +E   DR+ T +ALGGGVIGDM G+AAA Y+RGV
Sbjct:    4 VNVDLGERAYPIHIGADLIGRTELFAPHIAGASVTIVTNTTVEPLYGDTLRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLEQHADRKTTLIALGGGVIGDMTGFAAACYMRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURMS (3-dehydroquinate synthase OS=Burkholderia mallei (strain SAVP1) GN=aroB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG+R+YPI+IG+ L+   +L   H+ G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +E   DR+ T +ALGGGVIGDM G+AAA Y+RGV
Sbjct:    4 VNVDLGERAYPIHIGADLIGRTELFAPHIAGASVTIVTNTTVEPLYGDTLRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLEQHADRKTTLIALGGGVIGDMTGFAAACYMRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURMA (3-dehydroquinate synthase OS=Burkholderia mallei GN=aroB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG+R+YPI+IG+ L+   +L   H+ G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +E   DR+ T +ALGGGVIGDM G+AAA Y+RGV
Sbjct:    4 VNVDLGERAYPIHIGADLIGRTELFAPHIAGASVTIVTNTTVEPLYGDTLRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLEQHADRKTTLIALGGGVIGDMTGFAAACYMRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURM9 (3-dehydroquinate synthase OS=Burkholderia mallei (strain NCTC 10229) GN=aroB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG+R+YPI+IG+ L+   +L   H+ G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +E   DR+ T +ALGGGVIGDM G+AAA Y+RGV
Sbjct:    4 VNVDLGERAYPIHIGADLIGRTELFAPHIAGASVTIVTNTTVEPLYGDTLRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLEQHADRKTTLIALGGGVIGDMTGFAAACYMRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BURM7 (3-dehydroquinate synthase OS=Burkholderia mallei (strain NCTC 10247) GN=aroB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V VDLG+R+YPI+IG+ L+   +L   H+ G  V +VTN TV PLY D +  AL      VS   V+LPDGE YKN +TL  +FD  +E   DR+ T +ALGGGVIGDM G+AAA Y+RGV
Sbjct:    4 VNVDLGERAYPIHIGADLIGRTELFAPHIAGASVTIVTNTTVEPLYGDTLRAALAPLGKRVST--VVLPDGEAYKNWETLNLIFDGLLEQHADRKTTLIALGGGVIGDMTGFAAACYMRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_PSEAB (3-dehydroquinate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=aroB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 64/121 (52.89%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + VDLG+RSYPIYIG  LL        H+ G++V V++N TVAPLYL+ +  AL +G+    V  V+LPDGE YK  +TL  +FD  ++ R DR+ T +ALGGGVIGDM G+AAA Y RGV
Sbjct:    4 LHVDLGERSYPIYIGENLLGDARWFAPHIVGRRVAVISNETVAPLYLETLLKAL-QGH---EVTPVVLPDGEAYKQWETLQLIFDALLKERHDRKTTLIALGGGVIGDMAGFAAACYQRGV 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_PSEA8 (3-dehydroquinate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=aroB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 64/121 (52.89%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + VDLG+RSYPIYIG  LL        H+ G++V V++N TVAPLYL+ +  AL +G+    V  V+LPDGE YK  +TL  +FD  ++ R DR+ T +ALGGGVIGDM G+AAA Y RGV
Sbjct:    4 LHVDLGERSYPIYIGENLLGDARWFAPHIVGRRVAVISNETVAPLYLETLLKAL-QGH---EVTPVVLPDGEAYKQWETLQLIFDALLKERHDRKTTLIALGGGVIGDMAGFAAACYQRGV 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_PSEAE (3-dehydroquinate synthase OS=Pseudomonas aeruginosa GN=aroB PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 7.594e-28
Identity = 64/121 (52.89%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + VDLG+RSYPIYIG  LL        H+ G++V V++N TVAPLYL+ +  AL +G+    V  V+LPDGE YK  +TL  +FD  ++ R DR+ T +ALGGGVIGDM G+AAA Y RGV
Sbjct:    4 LHVDLGERSYPIYIGENLLGDARWFAPHIVGRRVAVISNETVAPLYLETLLKAL-QGH---EVTPVVLPDGEAYKQWETLQLIFDVLLKERHDRKTTLIALGGGVIGDMAGFAAACYQRGV 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_NITEU (3-dehydroquinate synthase OS=Nitrosomonas europaea GN=aroB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.594e-28
Identity = 62/114 (54.39%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  265 RSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            RSY I+IG GLL   DLL  H+ GKK  +VTN T+APLYL+K+  AL   +  V    + LPDGE YK+ +TL  +FD  +E R +RR   +ALGGGVIGD+ G+AAA+YLRGV
Sbjct:   18 RSYSIHIGQGLLSRMDLLLPHLPGKKAAIVTNTTIAPLYLEKLRSALAEHH--VETFAITLPDGERYKHWETLNLIFDALLEHRCERRTPLIALGGGVIGDLTGFAAATYLRGV 129          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_NITEC (3-dehydroquinate synthase OS=Nitrosomonas eutropha (strain C91) GN=aroB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.918e-28
Identity = 63/114 (55.26%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  265 RSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            RSY I+IG  LL   DLL  H+ GKK  +VTN T+APLYL+K+  AL      V    VILPDGE YKN +TL  +FD  +E R +R+   +ALGGGV+GD+ G+AAASYLRGV
Sbjct:   18 RSYTIHIGQELLTRIDLLLPHLPGKKAAIVTNTTIAPLYLEKLRSALAEHQ--VETFAVILPDGEQYKNWETLNLIFDALLEHRCERKTPLIALGGGVVGDLTGFAAASYLRGV 129          
The following BLAST results are available for this feature:
BLAST of FC929969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
AROB_BURP01.172e-2852.893-dehydroquinate synthase OS=Burkholderia pseudoma... [more]
AROB_BURMS1.172e-2852.893-dehydroquinate synthase OS=Burkholderia mallei (... [more]
AROB_BURMA1.172e-2852.893-dehydroquinate synthase OS=Burkholderia mallei G... [more]
AROB_BURM91.172e-2852.893-dehydroquinate synthase OS=Burkholderia mallei (... [more]
AROB_BURM71.172e-2852.893-dehydroquinate synthase OS=Burkholderia mallei (... [more]
AROB_PSEAB5.815e-2852.893-dehydroquinate synthase OS=Pseudomonas aeruginos... [more]
AROB_PSEA85.815e-2852.893-dehydroquinate synthase OS=Pseudomonas aeruginos... [more]
AROB_PSEAE7.594e-2852.893-dehydroquinate synthase OS=Pseudomonas aeruginos... [more]
AROB_NITEU7.594e-2854.393-dehydroquinate synthase OS=Nitrosomonas europaea... [more]
AROB_NITEC9.918e-2855.263-dehydroquinate synthase OS=Nitrosomonas eutropha... [more]

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Properties
Property NameValue
Genbank descriptionC34002D05EF PostHarvC1 Citrus clementina cDNA clone C34002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929969 ID=FC929969; Name=FC929969; organism=Citrus clementina; type=EST; length=607bp
ATCACGGCCAACTCATTCTCTCCTTCGCTGTCATCCAAACACGCGTCCAA
ACAGCCCGAGTTATATACCTGGTTTCGCAGCCCTAACGCGATTGCGCTTA
AGTCTCCGCCCTTGGCACCGGCTTCTATTGAGTTGAAACGGAACGGCGGT
TTCGTCCTGGGCCAGTATAAGGTGAACTGCAGGATATACGCGAGTAGTGC
GGCTCCGATGATGGATCAAACGGTTAGTAAAGCTCCTACGATTGTTGAGG
TGGATTTGGGACAGCGGAGCTACCCGATTTATATCGGATCCGGACTTCTG
GATCATCCCGACCTGCTCCAAAAGCATGTTCAAGGAAAGAAAGTTCTTGT
GGTTACTAACAACACAGTTGCACCATTGTACCTGGATAAAGTTACTGATG
CTTTGACAAGAGGGAATCCAAATGTTTCAGTTGAGAATGTGATTCTGCCA
GATGGTGAGAATTACAAGAACATGGATACTCTCATGAAAGTCTTTGACAA
GGCCATCGAGTCTCGGCTGGACCGGCGATGTACATTTGTTGCACTTGGAG
GTGGTGTTATTGGTGACATGTGTGGTTATGCTGCAGCCTCTTATCTTCGA
GGTGTTA
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