FC929969

Overview
NameFC929969
Unique NameFC929969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BARQU (3-dehydroquinate synthase OS=Bartonella quintana GN=aroB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVL------VVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V V L +  Y I IG GL+       KH   KK L      +VT++ VA L+LD +   LT+    +    +I+  GE  K+  TL  V D+ + +RL+R    +A GGGVIGD+ G+AA+   RG+
Sbjct:    6 VTVKLDKHCYDIIIGPGLVAQAVWQIKHSLHKKDLHQTRFALVTDSNVASLHLDTLQAELTKNK--IHTVPIIVEAGEQSKSFLTLQIVIDRILAARLERGDCVIAFGGGVIGDLGGFAASIIRRGM 130          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_RHOP5 (3-dehydroquinate synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=aroB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 41/129 (31.78%), Postives = 72/129 (55.81%), Query Frame = 1
Query:  232 APTIVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQ----GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            AP  VEV LG R Y I IG G ++    L + +     G +  +VT+ +VA  +L +   +L      ++   +++ +GE  K+   L +V +  IE++++R    +ALGGGV+GD+ G+A++   RG+
Sbjct:    9 APITVEVALGDRGYDIVIGRGGIES---LGRRITALRPGARTAIVTDRSVAKHWLPRAQASLDE--TGIAHSTIVVEEGEVSKSYAGLQQVCEALIEAKIERNDLVIALGGGVVGDLAGFASSIVRRGL 132          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_PROM4 (3-dehydroquinate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=aroB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 46/124 (37.10%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIG-SGLLDHPDLLQK--HVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            +++ L    Y + I  +GL    + L+K    +  KVLVVTN  V+  Y  +    L+    N ++  + +  GE  KN+ T+  + + A  SRL+R    +ALGGGVIGDM G+AAA++LRGV
Sbjct:    8 IKIKLAHNPYEVVIKKNGLARIGEELKKIGFKKATKVLVVTNKDVSVHYGKEFIHNLSDNGFNPTL--IEIKAGEERKNLATISDIHNAAYTSRLERGSLMIALGGGVIGDMTGFAAATWLRGV 129          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_OPITP (3-dehydroquinate synthase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=aroB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 1
Query:  235 PTIVEVDLGQRSYPIYIGSGLLDH--PDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            P  + VDLG RSYPI   + + ++    + +    G+KV V T+  VA   +  + +A+   +P ++        GE+ K++ +  +  D     ++DRR    A GGGVIGD+ G+ AAS+LRG+
Sbjct:    2 PNTLTVDLGHRSYPIVFAADVRNNVRDQVAELTTAGRKVAVFTDEQVASAQVGAL-EAMFGSSPRLA-----FAPGESAKSLASFGRAMDFLAAQKVDRRGVVFAFGGGVIGDLAGFIAASWLRGI 121          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_LACPL (3-dehydroquinate synthase OS=Lactobacillus plantarum GN=aroB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 44/124 (35.48%), Postives = 61/124 (49.19%), Query Frame = 1
Query:  238 TIVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQ-GKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            T +EV    + Y I I    L H   L   V   ++V VVT+  V P Y   VTD LT     V V  V  P GE  K+   +  + D+   +   R    +ALGGGV+GD+ G+ A+ Y+RG+
Sbjct:    4 TNIEVKTRVKQYQIKIMINSLHHLGTLVTKVWCARQVAVVTDTNVGPYYAKLVTDELTAAGFKVRVMTV--PAGEESKSWSQVQSLIDQLSAAHFSRSDGVLALGGGVVGDLAGFVASIYMRGI 125          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_PROM3 (3-dehydroquinate synthase OS=Prochlorococcus marinus (strain MIT 9303) GN=aroB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGS-GLLDHPDLLQKH--VQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V L  + Y + IG  GL      L++    +G KVLVV+N  VA  Y D    +L+      ++  +++  GE+ K   ++  + D A E++L+R    VALGGGV+GDM G+AAA++LRG+
Sbjct:   12 IPVALSHQPYEVVIGGEGLRGVGKELRRAGLKEGIKVLVVSNADVAEPYGDLCLQSLSDSGYRPTL--LVIEAGEDQKTPVSVALIHDAAYEAKLERGSLMVALGGGVVGDMTGFAAATWLRGI 133          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_BARBK (3-dehydroquinate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=aroB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = 1
Query:  229 KAPTIVEVDLGQRSYPIYIGSGLLDHPDLLQK---HVQG---KKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            KA TI  V L +  Y I IGS L+    L  K   H +G   K++ +VT+  VA L+L+ +   L+     +    +I+  GE  K+   L  + DK + +RL+R  + +A GGGVIGD+ G+AA+   RG+
Sbjct:    2 KAKTIT-VKLDKCCYDIIIGSDLIAQAALQIKSFFHQKGPHQKRLAIVTDTNVAALHLETLQAGLSANQ--IHTIPIIVEAGEQSKSFPVLQTIIDKILAARLERGDSIIAFGGGVIGDLGGFAASIIRRGM 130          
The following BLAST results are available for this feature:
BLAST of FC929969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
AROB_BARQU2.899e-1137.013-dehydroquinate synthase OS=Bartonella quintana G... [more]
AROB_RHOP54.945e-1131.783-dehydroquinate synthase OS=Rhodopseudomonas palu... [more]
AROB_PROM44.945e-1137.103-dehydroquinate synthase OS=Prochlorococcus marin... [more]
AROB_OPITP6.459e-1132.543-dehydroquinate synthase OS=Opitutus terrae (stra... [more]
AROB_LACPL6.459e-1135.483-dehydroquinate synthase OS=Lactobacillus plantar... [more]
AROB_PROM38.435e-1136.293-dehydroquinate synthase OS=Prochlorococcus marin... [more]
AROB_BARBK8.435e-1135.613-dehydroquinate synthase OS=Bartonella bacillifor... [more]

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Properties
Property NameValue
Genbank descriptionC34002D05EF PostHarvC1 Citrus clementina cDNA clone C34002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929969 ID=FC929969; Name=FC929969; organism=Citrus clementina; type=EST; length=607bp
ATCACGGCCAACTCATTCTCTCCTTCGCTGTCATCCAAACACGCGTCCAA
ACAGCCCGAGTTATATACCTGGTTTCGCAGCCCTAACGCGATTGCGCTTA
AGTCTCCGCCCTTGGCACCGGCTTCTATTGAGTTGAAACGGAACGGCGGT
TTCGTCCTGGGCCAGTATAAGGTGAACTGCAGGATATACGCGAGTAGTGC
GGCTCCGATGATGGATCAAACGGTTAGTAAAGCTCCTACGATTGTTGAGG
TGGATTTGGGACAGCGGAGCTACCCGATTTATATCGGATCCGGACTTCTG
GATCATCCCGACCTGCTCCAAAAGCATGTTCAAGGAAAGAAAGTTCTTGT
GGTTACTAACAACACAGTTGCACCATTGTACCTGGATAAAGTTACTGATG
CTTTGACAAGAGGGAATCCAAATGTTTCAGTTGAGAATGTGATTCTGCCA
GATGGTGAGAATTACAAGAACATGGATACTCTCATGAAAGTCTTTGACAA
GGCCATCGAGTCTCGGCTGGACCGGCGATGTACATTTGTTGCACTTGGAG
GTGGTGTTATTGGTGACATGTGTGGTTATGCTGCAGCCTCTTATCTTCGA
GGTGTTA
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