FC929969

Overview
NameFC929969
Unique NameFC929969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_TERTT (3-dehydroquinate synthase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=aroB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.210e-27
Identity = 60/121 (49.59%), Postives = 84/121 (69.42%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + +DLG+RSYPI+IG  LL +P L   H+  ++VLVVTN TVAPLYL ++   L+  +    +++V+LPDGE +K +  L  +FD  I  R +R+ T +ALGGGV+GDM G+AAA Y RGV
Sbjct:    4 LNLDLGERSYPIFIGQSLLQNPALFTPHLSSQQVLVVTNTTVAPLYLAQLKATLSHCD---KLDSVVLPDGEQHKTLGVLNTIFDTLIAQRHNRKTTLIALGGGVVGDMTGFAAACYQRGV 121          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_AERHH (3-dehydroquinate synthase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=aroB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.210e-27
Identity = 58/121 (47.93%), Postives = 86/121 (71.07%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++V+LG+RSYPI I +GLL H ++L + ++GK+V++VTN  VAPLYL+++   L+       VE++ILPDGE YK + T  ++    +E+   R  T +ALGGGVIGD+ G+AAASY RG+
Sbjct:    4 LKVELGERSYPIEIAAGLLQHAEVLTQTIKGKRVMIVTNTVVAPLYLERIVQLLS----GYQVEHLILPDGEAYKTLATFERIMSALLETNHGRDTTLIALGGGVIGDVVGFAAASYQRGI 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_AERS4 (3-dehydroquinate synthase OS=Aeromonas salmonicida (strain A449) GN=aroB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.886e-27
Identity = 58/121 (47.93%), Postives = 86/121 (71.07%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++V+LG+RSYPI I +GLL H ++L + ++GK+V++VTN  VAPLYL+++   L+       VE++ILPDGE YK + T  ++    +E+   R  T +ALGGGVIGD+ G+AAASY RG+
Sbjct:    4 LKVELGERSYPIEIAAGLLQHAEVLTQTIKGKRVMIVTNTVVAPLYLERIIQLLS----GFQVEHLILPDGEAYKTLATFERIMSALLETNHGRDTTLIALGGGVIGDVVGFAAASYQRGI 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_PROMH (3-dehydroquinate synthase OS=Proteus mirabilis (strain HI4320) GN=aroB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.922e-27
Identity = 63/121 (52.07%), Postives = 84/121 (69.42%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL   P+      +G++V++VTN T+APLYLDKVT+ L +    V V++VILPDGE YK++  +  VF   +E   +R  T +ALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIASGLFHQPETFLPLKKGQQVMIVTNVTLAPLYLDKVTNTLEQ--QGVLVDSVILPDGEQYKSLTVMNDVFTALLEKNHNRDTTLLALGGGVIGDLTGFAAASYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_AZOSB (3-dehydroquinate synthase OS=Azoarcus sp. (strain BH72) GN=aroB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.396e-27
Identity = 59/121 (48.76%), Postives = 86/121 (71.07%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG RSYPI+IG+GLL  P+L+   ++  +V +VTN  V PLYL+++T  L   +  ++V  V+LPDGE +K+  TL ++FD  +ESR +R  T +ALGGGV+GDM G+AAA+Y RG+
Sbjct:    4 LNVALGDRSYPIHIGAGLLARPELIVPLLRTPRVAIVTNTVVGPLYLERLTAGLE--SHGIAVSTVVLPDGEAHKDWTTLNRIFDMLLESRCERSTTLLALGGGVVGDMGGFAAATYQRGM 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SHELP (3-dehydroquinate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=aroB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.871e-26
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++V+LG RSYPI+IG  LL++ D    ++QGKK+L+VTN+T+APLYL KV   L         + VILPDGE YK +  +  +F   +   + R    +ALGGGVIGDM G+AAA Y RGV
Sbjct:    4 IQVELGVRSYPIFIGQNLLENSDYFSSYLQGKKILIVTNDTIAPLYLAKVQALLASYQ---CADPVILPDGEQYKTLSQMDAIFTSLLAQNMGRDSVLIALGGGVIGDMTGFAAACYQRGV 121          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SACD2 (3-dehydroquinate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=aroB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.871e-26
Identity = 61/121 (50.41%), Postives = 84/121 (69.42%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + VDLG RSYPI+IG+GLL +P+    ++  K+VLVVTN T+  LY D    +L  G        V+LPDGE+YKN++ L ++FD  +E + +R+ T VALGGGV+GDM G+AAA+Y RGV
Sbjct:    4 LHVDLGDRSYPIFIGAGLLANPEKFLPYLAAKQVLVVTNTTIDALYGDSFF-SLFEGMDKA--HKVVLPDGESYKNLEALNQIFDALLEGKHNRKTTLVALGGGVVGDMTGFAAAAYQRGV 121          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_DECAR (3-dehydroquinate synthase OS=Dechloromonas aromatica (strain RCB) GN=aroB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.443e-26
Identity = 59/121 (48.76%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI+IG+ +L  P+L+   +  K+V+VVTN +VAPLYLD++   L +    +    V+LPDGE YK  +TL  +FD  + +R +R  T +ALGGGVIGDM G+AAA Y RG+
Sbjct:    8 LNVALGERSYPIHIGTDVLSRPELILPFLSQKRVVVVTNTSVAPLYLDELRSGLEKCG--IETLPVVLPDGEQYKTWETLNLIFDALLAARCERNTTLIALGGGVIGDMGGFAAACYQRGM 126          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SHESW (3-dehydroquinate synthase OS=Shewanella sp. (strain W3-18-1) GN=aroB PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.167e-26
Identity = 57/121 (47.11%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++VDLG+RSYPIYIG  L++  + L +++  K++L+VTN TVAPLYL+++ + +        VE+VILPDGE +K++  L  +F   ++    R    VALGGGVIGDM G+AAA Y RG+
Sbjct:    5 IQVDLGERSYPIYIGQNLMNDSEALSRYLLKKRILIVTNETVAPLYLNQIQEVMVSFG---EVESVILPDGEQFKDLAHLDAIFTALLQRNYGRDSVLVALGGGVIGDMTGFAAACYQRGI 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SHEPC (3-dehydroquinate synthase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=aroB PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.167e-26
Identity = 57/121 (47.11%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++VDLG+RSYPIYIG  L++  + L +++  K++L+VTN TVAPLYL+++ + +        VE+VILPDGE +K++  L  +F   ++    R    VALGGGVIGDM G+AAA Y RG+
Sbjct:    5 IQVDLGERSYPIYIGQNLMNDSEALSRYLFKKRILIVTNETVAPLYLNQIQEVMVSFG---EVESVILPDGEQFKDLTHLDAIFTALLQRNYGRDSVLVALGGGVIGDMTGFAAACYQRGI 122          
The following BLAST results are available for this feature:
BLAST of FC929969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
AROB_TERTT2.210e-2749.593-dehydroquinate synthase OS=Teredinibacter turner... [more]
AROB_AERHH2.210e-2747.933-dehydroquinate synthase OS=Aeromonas hydrophila ... [more]
AROB_AERS42.886e-2747.933-dehydroquinate synthase OS=Aeromonas salmonicida... [more]
AROB_PROMH4.922e-2752.073-dehydroquinate synthase OS=Proteus mirabilis (st... [more]
AROB_AZOSB8.396e-2748.763-dehydroquinate synthase OS=Azoarcus sp. (strain ... [more]
AROB_SHELP1.871e-2648.763-dehydroquinate synthase OS=Shewanella loihica (s... [more]
AROB_SACD21.871e-2650.413-dehydroquinate synthase OS=Saccharophagus degrad... [more]
AROB_DECAR2.443e-2648.763-dehydroquinate synthase OS=Dechloromonas aromati... [more]
AROB_SHESW4.167e-2647.113-dehydroquinate synthase OS=Shewanella sp. (strai... [more]
AROB_SHEPC4.167e-2647.113-dehydroquinate synthase OS=Shewanella putrefacie... [more]

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Properties
Property NameValue
Genbank descriptionC34002D05EF PostHarvC1 Citrus clementina cDNA clone C34002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929969 ID=FC929969; Name=FC929969; organism=Citrus clementina; type=EST; length=607bp
ATCACGGCCAACTCATTCTCTCCTTCGCTGTCATCCAAACACGCGTCCAA
ACAGCCCGAGTTATATACCTGGTTTCGCAGCCCTAACGCGATTGCGCTTA
AGTCTCCGCCCTTGGCACCGGCTTCTATTGAGTTGAAACGGAACGGCGGT
TTCGTCCTGGGCCAGTATAAGGTGAACTGCAGGATATACGCGAGTAGTGC
GGCTCCGATGATGGATCAAACGGTTAGTAAAGCTCCTACGATTGTTGAGG
TGGATTTGGGACAGCGGAGCTACCCGATTTATATCGGATCCGGACTTCTG
GATCATCCCGACCTGCTCCAAAAGCATGTTCAAGGAAAGAAAGTTCTTGT
GGTTACTAACAACACAGTTGCACCATTGTACCTGGATAAAGTTACTGATG
CTTTGACAAGAGGGAATCCAAATGTTTCAGTTGAGAATGTGATTCTGCCA
GATGGTGAGAATTACAAGAACATGGATACTCTCATGAAAGTCTTTGACAA
GGCCATCGAGTCTCGGCTGGACCGGCGATGTACATTTGTTGCACTTGGAG
GTGGTGTTATTGGTGACATGTGTGGTTATGCTGCAGCCTCTTATCTTCGA
GGTGTTA
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