FC929969

Overview
NameFC929969
Unique NameFC929969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SHESR (3-dehydroquinate synthase OS=Shewanella sp. (strain MR-7) GN=aroB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.442e-26
Identity = 58/121 (47.93%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++VDLG+RSYPIYIG  L+   + L +++  K++L+VTN TVAPLYL ++ D +        V +VILPDGE +K++  L  +F   ++    R    VALGGGVIGDM G+AAA Y RGV
Sbjct:    5 IQVDLGERSYPIYIGQSLMSDSETLSRYLLKKRILIVTNETVAPLYLKQIQDTMASFG---EVSSVILPDGEQFKDLTHLDSIFTALLQRNYGRDSVLVALGGGVIGDMTGFAAACYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_HALHL (3-dehydroquinate synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=aroB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.442e-26
Identity = 59/119 (49.58%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  250 VDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V+LG+RSYPIYIG G+LD   +L +H+   + L+V+N TVAPLY +++        P   V++V L DGE YK + T  +V+D  IE R DR  T +ALGGGV+GDM G+ AA+Y RGV
Sbjct:    6 VELGERSYPIYIGDGVLDQ-GVLAEHLVADRALLVSNETVAPLYAERLAV------PGAEVQSVTLHDGERYKTLQTCEQVYDALIEGRFDRSATVIALGGGVVGDMAGFCAATYQRGV 117          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_COLP3 (3-dehydroquinate synthase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=aroB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.442e-26
Identity = 60/122 (49.18%), Postives = 80/122 (65.57%), Query Frame = 1
Query:  241 IVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            I+ +DLG+RSYPIYI SGL++  DLL  H++ K+V +VTN+ VAPLYLD +   LT    +  V+ VILPDGE  KN+     +    +     R  T +ALGGGVIGD+ G+AAA Y RG+
Sbjct:    3 ILNLDLGERSYPIYIDSGLINKTDLLSSHIRAKRVCIVTNDIVAPLYLDSLKAKLT----DFEVDEVILPDGEAEKNLANFEVIISHLLTLEHGRDTTLIALGGGVIGDITGFAAACYQRGI 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SHESM (3-dehydroquinate synthase OS=Shewanella sp. (strain MR-4) GN=aroB PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.108e-26
Identity = 58/121 (47.93%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++VDLG+RSYPIYIG  L+   + L +++  K++L+VTN TVAPLYL ++ D +        V +VILPDGE +K++  L  +F   ++    R    VALGGGVIGDM G+AAA Y RGV
Sbjct:    5 IQVDLGERSYPIYIGQSLMSDSETLSRYLLKKRILIVTNETVAPLYLKQIQDTMASFG---EVSSVILPDGEQFKDLTHLDSIFTALLQRNYARDSVLVALGGGVIGDMTGFAAACYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SHESA (3-dehydroquinate synthase OS=Shewanella sp. (strain ANA-3) GN=aroB PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.283e-26
Identity = 58/121 (47.93%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++VDLG+RSYPIYIG  L+   + L +++  K++L+VTN TVAPLYL ++ D +        V +VILPDGE +K++  L  +F   ++    R    VALGGGVIGDM G+AAA Y RGV
Sbjct:    5 IQVDLGERSYPIYIGQSLMSDGETLSRYLLKKRILIVTNETVAPLYLKQIQDTMASFG---EVTSVILPDGEQFKDLTHLDSIFTALLQRNYGRDSVLVALGGGVIGDMTGFAAACYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SALTY (3-dehydroquinate synthase OS=Salmonella typhimurium GN=aroB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G +V++VTN T+APLYLDKV   L R    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLERAG--VNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SALTI (3-dehydroquinate synthase OS=Salmonella typhi GN=aroB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G +V++VTN T+APLYLDKV   L R    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLERAG--VNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SALSV (3-dehydroquinate synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=aroB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G +V++VTN T+APLYLDKV   L R    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLERAG--VNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SALPK (3-dehydroquinate synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=aroB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G +V++VTN T+APLYLDKV   L R    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLERAG--VNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SALPC (3-dehydroquinate synthase OS=Salmonella paratyphi C (strain RKS4594) GN=aroB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G +V++VTN T+APLYLDKV   L R    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLERAG--VNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122          
The following BLAST results are available for this feature:
BLAST of FC929969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
AROB_SHESR5.442e-2647.933-dehydroquinate synthase OS=Shewanella sp. (strai... [more]
AROB_HALHL5.442e-2649.583-dehydroquinate synthase OS=Halorhodospira haloph... [more]
AROB_COLP35.442e-2649.183-dehydroquinate synthase OS=Colwellia psychreryth... [more]
AROB_SHESM7.108e-2647.933-dehydroquinate synthase OS=Shewanella sp. (strai... [more]
AROB_SHESA9.283e-2647.933-dehydroquinate synthase OS=Shewanella sp. (strai... [more]
AROB_SALTY1.212e-2552.073-dehydroquinate synthase OS=Salmonella typhimuriu... [more]
AROB_SALTI1.212e-2552.073-dehydroquinate synthase OS=Salmonella typhi GN=a... [more]
AROB_SALSV1.212e-2552.073-dehydroquinate synthase OS=Salmonella schwarzeng... [more]
AROB_SALPK1.212e-2552.073-dehydroquinate synthase OS=Salmonella paratyphi ... [more]
AROB_SALPC1.212e-2552.073-dehydroquinate synthase OS=Salmonella paratyphi ... [more]

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Properties
Property NameValue
Genbank descriptionC34002D05EF PostHarvC1 Citrus clementina cDNA clone C34002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929969 ID=FC929969; Name=FC929969; organism=Citrus clementina; type=EST; length=607bp
ATCACGGCCAACTCATTCTCTCCTTCGCTGTCATCCAAACACGCGTCCAA
ACAGCCCGAGTTATATACCTGGTTTCGCAGCCCTAACGCGATTGCGCTTA
AGTCTCCGCCCTTGGCACCGGCTTCTATTGAGTTGAAACGGAACGGCGGT
TTCGTCCTGGGCCAGTATAAGGTGAACTGCAGGATATACGCGAGTAGTGC
GGCTCCGATGATGGATCAAACGGTTAGTAAAGCTCCTACGATTGTTGAGG
TGGATTTGGGACAGCGGAGCTACCCGATTTATATCGGATCCGGACTTCTG
GATCATCCCGACCTGCTCCAAAAGCATGTTCAAGGAAAGAAAGTTCTTGT
GGTTACTAACAACACAGTTGCACCATTGTACCTGGATAAAGTTACTGATG
CTTTGACAAGAGGGAATCCAAATGTTTCAGTTGAGAATGTGATTCTGCCA
GATGGTGAGAATTACAAGAACATGGATACTCTCATGAAAGTCTTTGACAA
GGCCATCGAGTCTCGGCTGGACCGGCGATGTACATTTGTTGCACTTGGAG
GTGGTGTTATTGGTGACATGTGTGGTTATGCTGCAGCCTCTTATCTTCGA
GGTGTTA
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